Cp4.1LG08g03180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g03180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Cp4.1LG08: 2232891 .. 2237062 (+)
RNA-Seq Expression	Cp4.1LG08g03180
Synteny	Cp4.1LG08g03180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACATCTAAGAGAATGAAATCGGCCGAGCGAACGCTGTAGTTTCTCGGACAAAATCGAACCATGTCCTACCACTAATGATTGGCTAGTTAGGATACTATTTGGCTCCTAATTCCTTTTAAAAATCAAGAAGTTAATCTTTGATAATAAAATAATGGTAATAAAAGTGGATATACTTATCCAAATGGGGATTTAATATAATCTCTTAGACACTTTCCTGTGAGAAAGGGCGCCATCGCCTTCCACTCTCCACCGATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGCCGCCGCCGCCGCCGGAGCCTCCCTTTTCACCACCAAGCGCTGGCTCTCTGATGCTCTCCTTACAACCCCATCAGCCCTAATGTTTCCCATATTGTCCCGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATTTCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGTGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATCGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTAGATTGCCTGCAAATGTTACTGATTAGTTTCTACATTGAATTATCATTCATGATTTCATTTATATTCAATGGCATTATATGAAAACTTTGCTTCGAAGTCAAGCTCACAAGAGATCTAGTTCATCGTTAGGGTATCGAATCTTGATGTTTCCGAAGAAAATACCTCAAAACTTAGGTGGTCATCTTGTTAGGAATCACGAACCTCCACAATAGTATGATATTATCCACTTTGTGCATTAGCTCTCATGGCTTTCCTTTTGGTTTCTCTAAAAGGCCTCGTATCAATGAAGATGTATCCCTTATAAACCCGTGATCAACCCCTTAATTAGCTGATGTGGGACTCCTCTCCCAACAATCCTCCCCTTGAATAAAGTACACCATAGAGCCTCCCCTGAGGCCTATGGAGCCCTCAAGCAGCCTCCTCTTAATCGAGGCTCGACTCCTTCTCTGAAGCCCTCGAACAAAGTACATTATTTGTTCGACACTTGAGTTAGTTTTGACTACACTTTCGAGACTCACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGTCAAGTTAAAGGCATGACTCTAATACCATGTTAAGAATCATGAACCTCCATACGGGTATGATATTGTCCACTTTGAGTATTATCTCTCATGGCTTTGCTTTTGATTTCCCCAAAGGGCCTCGTACCAATGGAGATGTATTCCTTACTTATAAACCCACGATCAACCCCTTAATTAGCCAATGTGGGACTCCTCTCCCAACAATCCTCGACACATCTATCCTAGATCCTACCAACTTATTGAAATGTTGCAGGTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATGCTAACTCCATTGGTATGAGGCCTTTTGGGGAAACCCAAAGCAAAGCCATGAGAGCTTAAGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAGCAGGTTTAAGCAATCGTTTCATACTTTGAGATGCTTGTAATTAGTTCAAATATCCACAGAGAACCCACTGGCTAGGTTTGATATTTAAGTGGCAACTATATGTTGATCCAATGTGCTATTCCTTTTTTAACCAAATTGTTGAAGCAGTATGAGACCTACAATGGTGGGTTTCATGGAATGAGAGCATTGTAGCAGGGTATGATTCTGTTACTAAGGTGCTACAGTGCCAAGATGATATCCAATATATTATTTATTTGAAGAATTGGTCCTTTGTTTGTACAACTTTGTGGGGTTGTATGCTTAAATAGCTGCTAACCTTCATTTACCTTCCTTACTACTCAAATTCGAGCTCAAAACGTTAACCATCATTTACCACCATGGATTGATCTAGTGGTCATAAGGAACGGAAGAGAAAGTGAATGGAGAAGGAATGGATTTGAACCAAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTTTTTGGGCTTTCTCTTCCGGACTTCCCCTCAAAGTTTTTAAAACGCATATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAATCAATGTGGGATCTCACAATCCACCTCCCTTCGGGCCCCAACGTCTTTACTAGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCTCCAATCTACCTCCTTTGGCACCCAATGTCCTTGCTGGCACACTACCTCATGTCCACTCCCCTTCGGGGCTCCGCCTCCTTGCAGACACATCGCTCGGTGTCTGGCTCTGATATCAACTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGTTTTTCCTTTTGGGCTTCCCCTCAAAGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCATACCCTTATAAAGAATGTTCCGTTCCCCTCTCCAACCAATCTGGGATCTATATAGGTTTTCTGAATGACCAAATGCATCAAGGCTAGGCTATCTTTTTGTGAGATAAGTTGCGACATCCATAAGCTAGTTTGGACGCTCACAATACTTTTTTTAACGAAAGTTTCAATGTTCAATCGTCTGCATTTGTCCTTAAAAAACAGAATTCTCAACAATCTGCATTCAGTCTCTACTTAAAACTAAATAGTCAAGAGCATATTTTTATATTAAATCCCTCGTTCCTGAGGAGTCTCTAATCAATTCATACGGTATAAGGTTCTTTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGTGAGAATTTTTCTCTCTTACTTTCATTCTGTCCTCTATGTTGCTATATCTATCCTGATATAATTGGAACTGTTGGATTCTGATGCTAAATAATGAGTATCACTTATATTCAGGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAAGGACTTTTATATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTTGTAATGAATTGGTACGAGTCTTTCTTAGTTCTTATGTATCTTTCTGTTCACATTGTTATTATATCACTTCCTTTCGTGTAGCTCAATTGTGTCTGTTTTTTCGAGTTCTTAGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTCAAGGAAAACAAGCTCAGGGGTAAATATCAGCATACAATGACTAAACAAGAAACAGGAAAGAATTTCTACCTAGCTGTTACTGAACGAACCGCTCTCTTTTGTGTATACATCCCGTCTCCCACTTCTATACGTTACGAGCGATTCTCAACGGGAATAATATGTTCGGTTTCCAGCTATCATGGTAGAGATATCATGTGAATCCTGATTCAAACTGATGATCATCAGACAAGATTTCAAAAATGGTTGTAGCATGAATAAGAGAAGGAAATAGGAATGAATTTCTACCTTGCTGTAGCTGGTTGAACTCTGCAAGCAATTGAAGTTTCTTTCTCATCTGTTGCTGTATGTATTTCATTTACTCATATCTCAATCCTATACTTCACAATTGAAACTATTAGTGAGAATGTCATTTGATGGTATCTTAATGAAGTGGGAGACTTGTAGCAGGGACTAAGGAGTGATCTTTGAAACAGATAAACTCCATACTAGAAAAAAATGGAAGTCTGCTTTGATTTGTTATGTATCGTGATCAGCCTCATGATTTTAAAACGTTTGTTAGGGAGAGGTTTTTATACCTTTATAAGGAATGTTTCGTTCTTCTCTCCGGCCGATGTGTGATCTCACAATCCACTTTCTTTGGGGTCCTAACATCCTCGCTGGTACA

mRNA sequence

TAAACATCTAAGAGAATGAAATCGGCCGAGCGAACGCTGTAGTTTCTCGGACAAAATCGAACCATGTCCTACCACTAATGATTGGCTAGTTAGGATACTATTTGGCTCCTAATTCCTTTTAAAAATCAAGAAGTTAATCTTTGATAATAAAATAATGGTAATAAAAGTGGATATACTTATCCAAATGGGGATTTAATATAATCTCTTAGACACTTTCCTGTGAGAAAGGGCGCCATCGCCTTCCACTCTCCACCGATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGCCGCCGCCGCCGCCGGAGCCTCCCTTTTCACCACCAAGCGCTGGCTCTCTGATGCTCTCCTTACAACCCCATCAGCCCTAATGTTTCCCATATTGTCCCGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATTTCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGTGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATCGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAAGGACTTTTATATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTCAAGGAAAACAAGCTCAGGGGTAAATATCAGCATACAATGACTAAACAAGAAACAGGAAAGAATTTCTACCTAGCTGTTACTGAACGAACCGCTCTCTTTTGTGTATACATCCCGTCTCCCACTTCTATACGTTACGAGCGATTCTCAACGGGAATAATATGTTCGGTTTCCAGCTATCATGGTAGAGATATCATGTGAATCCTGATTCAAACTGATGATCATCAGACAAGATTTCAAAAATGGTTGTAGCATGAATAAGAGAAGGAAATAGGAATGAATTTCTACCTTGCTGTAGCTGGTTGAACTCTGCAAGCAATTGAAGTTTCTTTCTCATCTGTTGCTGTATGTATTTCATTTACTCATATCTCAATCCTATACTTCACAATTGAAACTATTAGTGAGAATGTCATTTGATGGTATCTTAATGAAGTGGGAGACTTGTAGCAGGGACTAAGGAGTGATCTTTGAAACAGATAAACTCCATACTAGAAAAAAATGGAAGTCTGCTTTGATTTGTTATGTATCGTGATCAGCCTCATGATTTTAAAACGTTTGTTAGGGAGAGGTTTTTATACCTTTATAAGGAATGTTTCGTTCTTCTCTCCGGCCGATGTGTGATCTCACAATCCACTTTCTTTGGGGTCCTAACATCCTCGCTGGTACA

Coding sequence (CDS)

ATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGCCGCCGCCGCCGCCGGAGCCTCCCTTTTCACCACCAAGCGCTGGCTCTCTGATGCTCTCCTTACAACCCCATCAGCCCTAATGTTTCCCATATTGTCCCGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATTTCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGTGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATCGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAAGGACTTTTATATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTCAAGGAAAACAAGCTCAGGGGTAA

Protein sequence

MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG

Homology

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-38
Identity = 85/210 (40.48%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 87  EEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVL 146
           EE   +E  E  E + V+GG        +LY GNLP+S+ SSQL++I  + G    +E++
Sbjct: 95  EEEEIEEKEERVESESVEGG--------RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIV 154

Query: 147 YDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPK--PKGLL----- 206
           YDR T +SRGFAFVTM S+E+  + I   DG+   GR ++VNF + P+   + ++     
Sbjct: 155 YDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIR 214

Query: 207 -----YPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYS 266
                + DS ++LYV+NLSW++TS+ L  AF +    + A+VIYD  +G+SRG+GF+++S
Sbjct: 215 STYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFS 274

Query: 267 TKSEMETALEACNELELEGRVIRVSLAQGK 285
           +   M +AL+  NE+ELEGR +R+++A  K
Sbjct: 275 SAEAMNSALDTMNEVELEGRPLRLNVAGQK 296

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 94/210 (44.76%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 79  KAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYG 138
           + AV++G E  V+DE   EG GQ    G      + KL+ GNLPY VDS +LA I    G
Sbjct: 25  EGAVSWGSETQVSDEGGVEG-GQ----GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG 84

Query: 139 VAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGL 198
           V E+ EV+Y+R T +SRGF FVTMS++E+  K +E L+G    GR L VN   K  P+G 
Sbjct: 85  VVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN---KAAPRGS 144

Query: 199 --LYPDSEYE----LYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVS 258
               P  ++E    +YV NL W V +  L Q F E+G VV ARV+ D ETG+SRG+GFV+
Sbjct: 145 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 204

Query: 259 YSTKSEMETALEACNELELEGRVIRVSLAQ 283
            S++SE+  A+ A +   L+GR +RV++A+
Sbjct: 205 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-36
Identity = 83/207 (40.10%), Postives = 124/207 (59.90%), Query Frame = 0


Query: 87  EEGVADETAEEGEGQVVDGGSPVESGK-----TKLYFGNLPYSVDSSQLADIVQDYGVAE 146
           EEG  +   + GE   V+     E  +      KL+ GNLPY VDS  LA + +  GV E
Sbjct: 104 EEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVE 163

Query: 147 LIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS----DKPKPKG 206
           + EV+Y+R+T +SRGF FVTMS++E+  K +E  +     GRLL VN +    ++P+   
Sbjct: 164 IAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPP 223

Query: 207 LLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKS 266
             +  S Y +YV N+ W +    L Q F E+G VV ARV+YD ETG+SRG+GFV+ ++++
Sbjct: 224 RTFEQS-YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 283

Query: 267 EMETALEACNELELEGRVIRVSLAQGK 285
           EM  A+   +   L+GR IRV++A+ +
Sbjct: 284 EMSDAIANLDGQSLDGRTIRVNVAEDR 309

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-35
Identity = 82/198 (41.41%), Postives = 119/198 (60.10%), Query Frame = 0


Query: 102 VVDGGSPVE-----SGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRG 161
           V DG   VE     S   K++ GNLP+S DS+ LA++ +  G  E++EV+YD+ TG+SRG
Sbjct: 70  VEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRG 129

Query: 162 FAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPK----------PKGLLYPDSEYE 221
           F FVTMSS E+     +  +G    GR LRVN    P+           +G    DS   
Sbjct: 130 FGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNR 189

Query: 222 LYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEAC 281
           +YV NL+W V  ++L   F E G VV A+V+YD ++G+SRG+GFV+YS+  E+  A+E+ 
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249

Query: 282 NELELEGRVIRVSLAQGK 285
           + ++L GR IRVS A+ +
Sbjct: 250 DGVDLNGRAIRVSPAEAR 267

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-35
Identity = 82/195 (42.05%), Postives = 120/195 (61.54%), Query Frame = 0


Query: 92  DETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNT 151
           DE+ E  +G     G P    + KL+ GNLPY VDS  LA + +  G  E+ EV+Y+R+T
Sbjct: 95  DESFESEDGV----GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 154

Query: 152 GKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS----DKPKPKGLLYPDSEYEL 211
            +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ +  +Y D+ + +
Sbjct: 155 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY-DAAFRI 214

Query: 212 YVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACN 271
           YV NL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  S ++E+  A+ A +
Sbjct: 215 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALD 274

Query: 272 ELELEGRVIRVSLAQ 283
              LEGR I+V++A+
Sbjct: 275 GQNLEGRAIKVNVAE 284

[Close]

BLAST of Cp4.1LG08g03180 vs. NCBI nr
Match: XP_023539751.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547 bits (1409), Expect = 9.30e-196
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288

[Close]

BLAST of Cp4.1LG08g03180 vs. NCBI nr
Match: XP_022937376.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 536 bits (1382), Expect = 1.09e-191
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMATAA   GASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATAA---GASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Cp4.1LG08g03180 vs. NCBI nr
Match: KAG6597332.1 (Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 536 bits (1380), Expect = 4.94e-184
Identity = 283/288 (98.26%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMATAA   GAS+FTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATAA---GASIFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Cp4.1LG08g03180 vs. NCBI nr
Match: KAG7028798.1 (hypothetical protein SDJN02_09979 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 518 bits (1334), Expect = 2.05e-177
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 13  MATAA-AAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGI 72
           MATAA AAAGAS+FTTKRWLSDALLTTPSALMFPILSRSLAIES PLRAFSERWRPALGI
Sbjct: 1   MATAAVAAAGASIFTTKRWLSDALLTTPSALMFPILSRSLAIESGPLRAFSERWRPALGI 60

Query: 73  SAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLA 132
           SAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGNLPYSVDSSQLA
Sbjct: 61  SAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLA 120

Query: 133 DIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSD 192
           DIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSD
Sbjct: 121 DIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSD 180

Query: 193 KPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFV 252
           KPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFV
Sbjct: 181 KPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFV 240

Query: 253 SYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           SYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG
Sbjct: 241 SYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 277

[Close]

BLAST of Cp4.1LG08g03180 vs. NCBI nr
Match: XP_022974541.1 (LOW QUALITY PROTEIN: putative G3BP-like protein [Cucurbita maxima])

HSP 1 Score: 508 bits (1307), Expect = 1.65e-173
Identity = 269/278 (96.76%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMAT AA  GASLF TKRWLSDALL TPSALMFPILS SLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATVAA--GASLFITKRWLSDALLATPSALMFPILSGSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDR+TGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRV 278
           ETGKSRGYGFVSYSTKSEMETALE CNELELEGRVIRV
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEVCNELELEGRVIRV 276

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL
Match: A0A6J1FA65 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443680 PE=4 SV=1)

HSP 1 Score: 536 bits (1382), Expect = 5.26e-192
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMATAA   GASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATAA---GASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL
Match: A0A6J1IBM8 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111473207 PE=4 SV=1)

HSP 1 Score: 508 bits (1307), Expect = 8.00e-174
Identity = 269/278 (96.76%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRA 60
           MLPISSLSNSPTMAT AA  GASLF TKRWLSDALL TPSALMFPILS SLAIESAPLRA
Sbjct: 1   MLPISSLSNSPTMATVAA--GASLFITKRWLSDALLATPSALMFPILSGSLAIESAPLRA 60

Query: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGN 120
           FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQ VDGGSPVESGKTKLYFGN
Sbjct: 61  FSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGN 120

Query: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180
           LPYSVDSSQLADIVQDYGVAELIEVLYDR+TGKSRGFAFVTMSSIEDCNKVIENLDGTAY
Sbjct: 121 LPYSVDSSQLADIVQDYGVAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 180

Query: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240
           MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD
Sbjct: 181 MGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDD 240

Query: 241 ETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRV 278
           ETGKSRGYGFVSYSTKSEMETALE CNELELEGRVIRV
Sbjct: 241 ETGKSRGYGFVSYSTKSEMETALEVCNELELEGRVIRV 276

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL
Match: A0A0A0L496 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 2.10e-143
Identity = 224/283 (79.15%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 13  MATAAAAAGASLFTT-------KRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERW 72
           MA AAAA GAS F T       K WLSD+LL TPS  + PILSRSLAIES  LRA SE+W
Sbjct: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60

Query: 73  RPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSV 132
           RP + ISAAVVQ + AVT GVEEGV +ET        V+GGSPVESG TKLYFGNLPYSV
Sbjct: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETE-------VEGGSPVESGSTKLYFGNLPYSV 120

Query: 133 DSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 192
           DSSQLA IVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGR+L
Sbjct: 121 DSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRIL 180

Query: 193 RVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKS 252
           RVNFSDKPKPK  LYP++EY+L+V NLSWSVTSE L QAFQEYGNVVGARVIYD ETGKS
Sbjct: 181 RVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKS 240

Query: 253 RGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           RGYGFVSYSTKSEMETALE  NELELEGRVIRVSLA+GKQA G
Sbjct: 241 RGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL
Match: A0A6J1DUT6 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024570 PE=4 SV=1)

HSP 1 Score: 401 bits (1031), Expect = 1.36e-138
Identity = 215/285 (75.44%), Postives = 239/285 (83.86%), Query Frame = 0


Query: 13  MATAAAAAGASL---------FTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSE 72
           MA AAA  G+S            +K WLSD+LL  PS  M P+LSR LA+ESA LRAFSE
Sbjct: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60

Query: 73  RWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPY 132
           +WRP LGISAAVVQ + AVT   EEGVA+E   +G G+ V GGSPVE+G TKLYFGNLPY
Sbjct: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEE---KGGGEAVGGGSPVEAGSTKLYFGNLPY 120

Query: 133 SVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR 192
           SVDSSQLA IVQ++GV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR
Sbjct: 121 SVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGR 180

Query: 193 LLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETG 252
           +LRVNFSDKPKPK  LYP++EY+L+V NLSWSVTSESL QAFQEYGNVVGARVIY+ ETG
Sbjct: 181 VLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETG 240

Query: 253 KSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
           +SRGYGFVSYSTK EME ALEA NE+ELEGRVIRVSLA+GKQAQG
Sbjct: 241 RSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 400 bits (1029), Expect = 4.37e-132
Identity = 218/273 (79.85%), Postives = 231/273 (84.62%), Query Frame = 0


Query: 13  MATAAAAAGASLFTT-------KRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERW 72
           MA AAAA GAS FTT       K W SD+LL TPS  + PILSRSL IES PLRA SERW
Sbjct: 1   MAAAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERW 60

Query: 73  RPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSV 132
           RP L ISAAVVQ + AV  GVEEGV +ETA       V+GGSPVESG TKLYFGNLPYSV
Sbjct: 61  RPVLIISAAVVQGETAVMVGVEEGVEEETA-------VEGGSPVESGSTKLYFGNLPYSV 120

Query: 133 DSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 192
           DSSQLA IVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR+L
Sbjct: 121 DSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRIL 180

Query: 193 RVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKS 252
           RVNFSDKPKPK  LYP++EY+L+V NLSWSVTSE L QAFQEYGNVVGARVIY+ ETGKS
Sbjct: 181 RVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKS 240

Query: 253 RGYGFVSYSTKSEMETALEACNELELEGRVIRV 278
           RGYGFVSYSTKSEMETALEA NE+ELEGRVIRV
Sbjct: 241 RGYGFVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Cp4.1LG08g03180 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 5.6e-68
Identity = 129/221 (58.37%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 66  RPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSV 125
           +P L  S +  +R   ++  +   + +E  ++G   V+D   P  +  TKLYFGNLPY+V
Sbjct: 40  KPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLD---PPAAVNTKLYFGNLPYNV 99

Query: 126 DSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 185
           DS+ LA I+QD+   EL+EVLY+R+TG+SRGFAFVTMS++EDCN +I+NLDGT Y+GR L
Sbjct: 100 DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRAL 159

Query: 186 RVNFSDKPKP-KGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGK 245
           +VNF+DKPKP K  LYP++E++L+V NLSW+VTSESLA AF+E G+VVGARV++D +TG+
Sbjct: 160 KVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 219

Query: 246 SRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQ 286
           SRGYGFV YS+K+EMETALE+ +  ELEGR IRV+LAQGK+
Sbjct: 220 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257

[Close]

BLAST of Cp4.1LG08g03180 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-36
Identity = 82/195 (42.05%), Postives = 120/195 (61.54%), Query Frame = 0


Query: 92  DETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNT 151
           DE+ E  +G     G P    + KL+ GNLPY VDS  LA + +  G  E+ EV+Y+R+T
Sbjct: 95  DESFESEDGV----GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 154

Query: 152 GKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS----DKPKPKGLLYPDSEYEL 211
            +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ +  +Y D+ + +
Sbjct: 155 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY-DAAFRI 214

Query: 212 YVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACN 271
           YV NL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  S ++E+  A+ A +
Sbjct: 215 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALD 274

Query: 272 ELELEGRVIRVSLAQ 283
              LEGR I+V++A+
Sbjct: 275 GQNLEGRAIKVNVAE 284

[Close]

BLAST of Cp4.1LG08g03180 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-36
Identity = 75/213 (35.21%), Postives = 129/213 (60.56%), Query Frame = 0


Query: 87  EEGVADETAEEGEGQVVDGGSPVESG--KTKLYFGNLPYSVDSSQLADIVQDYGVAELIE 146
           EE   +E  +EGE +V +     ++   + +LY GNLPY++ SS+L+ I  + G    ++
Sbjct: 87  EEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQ 146

Query: 147 VLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKP----------- 206
           ++YD+ T +SRGF FVTM SIE+  + ++  + +   GR ++VNF + P           
Sbjct: 147 IVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK 206

Query: 207 -KPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVS 266
            +     Y DS +++Y  NL W++TS+ L  AF +   V+GA+VIY+  TG+SRG+GF+S
Sbjct: 207 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFIS 266

Query: 267 YSTKSEMETALEACNELELEGRVIRVSLAQGKQ 286
           + +   +++AL   N +E+EGR +R++LA  ++
Sbjct: 267 FESAENVQSALATMNGVEVEGRALRLNLASERE 299

[Close]

BLAST of Cp4.1LG08g03180 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-35
Identity = 86/209 (41.15%), Postives = 121/209 (57.89%), Query Frame = 0


Query: 88  EGVADE----TAEEGEGQVVDGG------SPVESGKTKLYFGNLPYSVDSSQLADIVQDY 147
           EG A E      +E EG V +G        P  S + KL+ GNL Y V+S  LA + +  
Sbjct: 114 EGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 173

Query: 148 GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS----DKP 207
           G  E+ EV+Y+R T +SRGF FVTMSS+++    +E  +     GRLL VN +     +P
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRP 233

Query: 208 KPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSY 267
           +    +Y +  + +YV NL W V +  L Q F E+G VV ARV+YD ETG+SRG+GFV+ 
Sbjct: 234 ERAPRVY-EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 293

Query: 268 STKSEMETALEACNELELEGRVIRVSLAQ 283
           S   E+  A+ A +   LEGR IRV++A+
Sbjct: 294 SDVDELNEAISALDGQNLEGRAIRVNVAE 321

[Close]

BLAST of Cp4.1LG08g03180 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-34
Identity = 100/295 (33.90%), Postives = 147/295 (49.83%), Query Frame = 0


Query: 13  MATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGIS 72
           MA +A++   S F  K            +L+ P LS  L  +S    + + +W       
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSF-SIAAKWNS----P 60

Query: 73  AAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLAD 132
           A+   R  A+T         E  E+G   V        S   KL+ GNLP++VDS+QLA 
Sbjct: 61  ASRFARNVAITSEF------EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQ 120

Query: 133 IVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDK 192
           + +  G  E++EV+YD+ TG+SRGF FVTMSS+ +     +  +G    GR LRVN +  
Sbjct: 121 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-AGP 180

Query: 193 PKPK-----------------------GLLYPDSEYELYVSNLSWSVTSESLAQAFQEYG 252
           P PK                       G     S   +YV NLSW V   +L   F E G
Sbjct: 181 PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG 240

Query: 253 NVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGK 285
            VV ARVIYD ++G+S+G+GFV+Y +  E++ A+++ +  +L+GR IRVS A+ +
Sbjct: 241 KVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g03180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	2.6e-38	40.48	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.3e-37	44.76	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19683	2.5e-36	40.10	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08935	1.6e-35	41.41	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9FGS0	2.1e-35	42.05	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]

BLAST of Cp4.1LG08g03180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539751.1	9.30e-196	100.00	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937376.1	1.09e-191	98.61	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]	[more]
KAG6597332.1	4.94e-184	98.26	Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028798.1	2.05e-177	98.56	hypothetical protein SDJN02_09979 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022974541.1	1.65e-173	96.76	LOW QUALITY PROTEIN: putative G3BP-like protein [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g03180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FA65	5.26e-192	98.61	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IBM8	8.00e-174	96.76	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L496	2.10e-143	79.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
A0A6J1DUT6	1.36e-138	75.44	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S4DSH7	4.37e-132	79.85	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG08g03180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60000.1	5.6e-68	58.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.5e-36	42.05	chloroplast RNA-binding protein 31B	[more]
AT3G52380.1	2.5e-36	35.21	chloroplast RNA-binding protein 33	[more]
AT4G24770.1	2.1e-35	41.15	31-kDa RNA binding protein	[more]
AT2G37220.1	4.0e-34	33.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 206..279 e-value: 4.7E-26 score: 102.5 coord: 115..188 e-value: 1.7E-21 score: 87.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 207..277 e-value: 1.8E-21 score: 75.7 coord: 116..185 e-value: 1.4E-15 score: 56.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 114..192 score: 17.62579
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 205..283 score: 19.194885
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 195..288 e-value: 1.4E-27 score: 98.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 78..194 e-value: 6.9E-24 score: 86.6
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 92..153 coord: 150..190 coord: 197..285
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 150..190 coord: 92..153 coord: 197..285
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 114..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g03180.1	Cp4.1LG08g03180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding