Cp4.1LG08g02450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g02450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L37a
Location	Cp4.1LG08: 2696193 .. 2698735 (-)
RNA-Seq Expression	Cp4.1LG08g02450
Synteny	Cp4.1LG08g02450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCTTTAAAACCCGAAACCAAAGTTGGGCCAGAAACGAATTTAGTATTTCGTCGGGGGCTATATAAACAGCCAGAGAAAAACTAGGGTTTTCCCGCTTGGCCGTTCAGTCTCTGCACCAGCGTCTCTCCAGAGGTGTCCTTGTTGCTCGAAGGTTTCAACAATGGTACTCTATCTCTCTTACGGATTTCATGATTTTCTTTACTACTTTCTTGTTTCTGGAAATTTGAAGTTCTTTTAGAAGGTTCGAAGGTGAGAGATGATGTCTGTAGCCTGTAGGATTAATTTGCGAGGAGAGATGAATGAACTAGAATCAAAACCATGAGGTTCGTTCTTCTGATAAATGAAACGTTGGGAAGGAAAATAGGTCGCTCTGTGGTAGAGGATGATCAATTCGATTTCATGGATCTCACGTAGTTAAAACTTGATTTAATCTAGCAATTAGGTTAGATAACTTACGATTATCTGTTTTTCTTTGATTTTGTATATTTTCACTACGGGTCTACTTCCAGCTCTATTCGAAGAGAGAATTGAACATGTCTTGAGAGGACTTCTTTGGGACGATTGTTCACCGAATATATATATATTTATGGTTGTTTTCTGTAGCGATTTCTAACTTGTGCTTATTTTGATTCCCTGTATAATCGCAGACGAAGAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTATGTGCTAACATCTTATGCTTTTACTAGCAGTGAAATTTAATCTGTACGCCTTATATTAGAGCAACTGGTGTAAGTTGTGGATTGATAAGAGATTATTGAATAATGATTTCTAAAGAAGAGCTGCCTTCAACAAAGTTGACATATGGCTTGACTAGTTGCGCAATAGTTTTAAATTGATTGGGAGCTTTTCAAGAGCCTCTTGTTCCTCTATCCTTTGCTGTTCACGTTTGTGTACATTATGATATGCTTAGTTATGTTTGTAATTGGTTTATTATCGGTCTTCTGTACCAGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGGTAAGTTTATTTAGTCAGCTTTTACTTTACTGCTATTTGGGTTACAAGTAGTTCCATGCAATGTTTTAAAAGGCCACCTTCAGGTGGTATGAGGCGCAAGCCTCAATTTTTTAATGAAAAACATTAGGCAATTCCTAAATTTGTTTGAACAAGAATTACTAAACATATTACTTGTATCAAAACATAAAATATACCCGTCGATTACCACTTAATTAATAATTCTAAAATGTTATCTTTAACATCTTTAAAGCTTAATTAGTAAATGAAGCAATAGTTCAAATTGTTACCACGTGAACTTTTATATTTTAGAGAATGAGGCAAAATTAGTATTATTTTCTAATCATCTAGTGTAGAGACTTTAAGCATTGGTGCGTTTTGATAGAGGTGCAAGTCCTGAGGCCAAAAGTTAGTCTTCCTTTGAGATAAGCCTTAATAGCCTTTTAAAACTTTGGTTCCACAACAATGCTAGAGTTTAGACATACTGATAAATGACTTTAATGTTGGTCTCGATTGCAAATTTTCCGGTCCAAATAATATGGTGACATGGTTTACGATAAATGACTTTAATGTTGGTCTCGATTGCAAATTTTCCGGTCCAAATAATATGGTGACATGGTTTACGATGTATCTTCCATAAAAATGTAATATCATTTGATCAATCAACTCCTTTTCCTATTTATAGAAAAATTACTTGCCATCAGTACAACAATTCTCTGAACTTCTGATAAAAGATGACATTTCGGTGGTACTTGTTAAATTTCAAGATTCAAATCAATGACTTCTGTCTCAAACTCTTAACAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACGTTGAAGTGAGTAGATTTAATTGGTTCTTGTTATGCAATGCTATTTGTGCTTTCAAACCCAGTTCAAGGTTTTGATTTTGTTTCTTTGTTTTGGGCAGCACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGAGGGAACAGACAGAGAGTTAAGTTTAATTTAGATTTTGTTTTTCTTCCCTCTTCAGTTTAATTTAGTGGTCTGTGATAGTGTAGAGTTTTTTGGAAGCAATTTGAGTACCCATTTGACTTCATTTGAAGCTGAGATTCCAGAGCTTTTAAACTATAGCTGCTCTCTGCTCTCTTGGCCACATTATTTTTAATCATTCTGGATTTTGAGACTGCAACATCTTGCTTGCCTAAGTATATGGTTTAGTTTTTGGTCAACTGCATCACATCATTATATTATCAGGCGTTAGATATTTAATCATTCTGGATTTTTTATATTTATTTTCACGAGATTCCTTTGGGAATTGGGTAATTCTTTTTCATCTATTTTTTTAAATAATCTTTTTAATTTTTCAATACAATTTAATTTAAAATATAAAACATCTCATAATATTTTGGAAGTATGGAAAATAAC

mRNA sequence

TGGGCTTTAAAACCCGAAACCAAAGTTGGGCCAGAAACGAATTTAGTATTTCGTCGGGGGCTATATAAACAGCCAGAGAAAAACTAGGGTTTTCCCGCTTGGCCGTTCAGTCTCTGCACCAGCGTCTCTCCAGAGGTGTCCTTGTTGCTCGAAGGTTTCAACAATGACGAAGAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACGTTGAACACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGAGGGAACAGACAGAGAGTTAAGTTTAATTTAGATTTTGTTTTTCTTCCCTCTTCAGTTTAATTTAGTGGTCTGTGATAGTGTAGAGTTTTTTGGAAGCAATTTGAGTACCCATTTGACTTCATTTGAAGCTGAGATTCCAGAGCTTTTAAACTATAGCTGCTCTCTGCTCTCTTGGCCACATTATTTTTAATCATTCTGGATTTTGAGACTGCAACATCTTGCTTGCCTAAGTATATGGTTTAGTTTTTGGTCAACTGCATCACATCATTATATTATCAGGCGTTAGATATTTAATCATTCTGGATTTTTTATATTTATTTTCACGAGATTCCTTTGGGAATTGGGTAATTCTTTTTCATCTATTTTTTTAAATAATCTTTTTAATTTTTCAATACAATTTAATTTAAAATATAAAACATCTCATAATATTTTGGAAGTATGGAAAATAAC

Coding sequence (CDS)

ATGACGAAGAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACGTTGAACACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGAGGGAACAGACAGAGAGTTAA

Protein sequence

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Homology

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.1e-44
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. NCBI nr
Match: XP_002282974.1 (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera] >XP_004133971.1 60S ribosomal protein L37a [Cucumis sativus] >XP_004148368.1 60S ribosomal protein L37a [Cucumis sativus] >XP_004244552.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004245836.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004245837.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004248984.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_006345354.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006354681.2 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006362483.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006440143.1 60S ribosomal protein L37a [Citrus clementina] >XP_006445466.1 60S ribosomal protein L37a [Citrus clementina] >XP_006477063.1 60S ribosomal protein L37a [Citrus sinensis] >XP_007039638.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Theobroma cacao] >XP_007052397.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Theobroma cacao] >XP_007218651.1 60S ribosomal protein L37a [Prunus persica] >XP_008229490.1 PREDICTED: 60S ribosomal protein L37a [Prunus mume] >XP_008232335.1 PREDICTED: 60S ribosomal protein L37a [Prunus mume] >XP_008355544.1 60S ribosomal protein L37a [Malus domestica] >XP_008373627.1 60S ribosomal protein L37a [Malus domestica] >XP_008382254.1 60S ribosomal protein L37a [Malus domestica] >XP_008389115.1 60S ribosomal protein L37a [Malus domestica] >XP_008438301.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_008457163.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_008465908.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_009371855.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009375382.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009378386.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009593570.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009597850.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009600968.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009601940.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009607073.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009791162.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009792526.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009796147.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009796644.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009797153.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_011649070.1 60S ribosomal protein L37a [Cucumis sativus] >XP_012075395.1 60S ribosomal protein L37a [Jatropha curcas] >XP_012439403.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012439404.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012475378.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012475789.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Gossypium raimondii] >XP_012486779.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_015083230.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015085596.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015085598.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015169494.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_016435128.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016440705.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016443665.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016447895.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016459874.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016464635.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016482299.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016486270.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016495148.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016544343.1 PREDICTED: 60S ribosomal protein L37a [Capsicum annuum] >XP_016570820.1 PREDICTED: 60S ribosomal protein L37a [Capsicum annuum] >XP_016665842.1 60S ribosomal protein L37a isoform X2 [Gossypium hirsutum] >XP_016670633.2 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016677215.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016681999.1 60S ribosomal protein L37a isoform X2 [Gossypium hirsutum] >XP_016716653.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016736628.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016736629.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_017611253.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_017626460.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_017634972.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_019159486.1 PREDICTED: 60S ribosomal protein L37a isoform X1 [Ipomoea nil] >XP_019168278.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019188287.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019190693.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019236663.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019239719.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019244840.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019259287.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019264119.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_020419225.1 60S ribosomal protein L37a [Prunus persica] >XP_021280730.1 60S ribosomal protein L37a isoform X2 [Herrania umbratica] >XP_021283132.1 60S ribosomal protein L37a [Herrania umbratica] >XP_021811295.1 60S ribosomal protein L37a [Prunus avium] >XP_021822793.1 60S ribosomal protein L37a [Prunus avium] >XP_021911807.1 60S ribosomal protein L37a [Carica papaya] >XP_022147039.1 60S ribosomal protein L37a [Momordica charantia] >XP_022155750.1 60S ribosomal protein L37a [Momordica charantia] >XP_022718295.1 60S ribosomal protein L37a isoform X2 [Durio zibethinus] >XP_022736973.1 60S ribosomal protein L37a isoform X2 [Durio zibethinus] >XP_022756879.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022757947.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022770148.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022924256.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022931770.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022943009.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022958815.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022964442.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022973248.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_022980454.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023000583.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023005985.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023513686.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023527833.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023538970.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023547599.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023553922.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023758919.1 60S ribosomal protein L37a [Lactuca sativa] >XP_023762965.1 60S ribosomal protein L37a [Lactuca sativa] >XP_024193137.1 60S ribosomal protein L37a [Rosa chinensis] >XP_024961425.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_024985841.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_024994562.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_028083840.1 60S ribosomal protein L37a [Camellia sinensis] >XP_028092020.1 60S ribosomal protein L37a [Camellia sinensis] >XP_030494579.1 60S ribosomal protein L37a [Cannabis sativa] >XP_030500698.1 60S ribosomal protein L37a [Cannabis sativa] >XP_031092108.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031097850.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031111303.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031127208.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031259510.1 60S ribosomal protein L37a isoform X2 [Pistacia vera] >XP_031277584.1 60S ribosomal protein L37a [Pistacia vera] >XP_034204370.1 60S ribosomal protein L37a [Prunus dulcis] >XP_034215281.1 60S ribosomal protein L37a [Prunus dulcis] >XP_034701638.1 60S ribosomal protein L37a [Vitis riparia] >XP_034708385.1 60S ribosomal protein L37a [Vitis riparia] >XP_038887517.1 60S ribosomal protein L37a [Benincasa hispida] >XP_038900283.1 60S ribosomal protein L37a [Benincasa hispida] >XP_038906728.1 60S ribosomal protein L37a [Benincasa hispida] >XP_042494879.1 60S ribosomal protein L37a [Macadamia integrifolia] >KAA0039616.1 60s ribosomal protein l37a [Cucumis melo var. makuwa] >KAA8522119.1 hypothetical protein F0562_012567 [Nyssa sinensis] >KAB2000539.1 hypothetical protein ES319_D12G238900v1 [Gossypium barbadense] >KAB2595249.1 hypothetical protein D8674_030699 [Pyrus ussuriensis x Pyrus communis] >KAF5188493.1 60S ribosomal protein L37a [Thalictrum thalictroides] >KAF7828500.1 60S ribosomal protein L37a [Senna tora] >KAG5588965.1 hypothetical protein H5410_039479 [Solanum commersonii] >KAG6574833.1 60S ribosomal protein L37a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018886.1 60S ribosomal protein L37a [Cucurbita argyrosperma subsp. argyrosperma] >KAG8486406.1 hypothetical protein CXB51_019918 [Gossypium anomalum] >MTV28927.1 50S ribosomal protein L37Ae [Nitriliruptoraceae bacterium ZYF776] >OMO69695.1 Ribosomal protein L37ae [Corchorus capsularis] >OMP00783.1 Ribosomal protein L37ae [Corchorus olitorius] >PAL78965.1 50S ribosomal protein L37ae [Acinetobacter baumannii] >PON33144.1 Ribosomal protein [Parasponia andersonii] >PON99780.1 Ribosomal protein [Trema orientale] >PQM34207.1 hypothetical protein Pyn_12883 [Prunus yedoensis var. nudiflora] >PWA36555.1 hypothetical protein CTI12_AA598620 [Artemisia annua] >TMW84679.1 hypothetical protein EJD97_024652 [Solanum chilense] >TQD70118.1 hypothetical protein C1H46_044347 [Malus baccata] >TYG42390.1 hypothetical protein ES288_D12G252600v1 [Gossypium darwinii] >TYH40535.1 hypothetical protein ES332_D12G253600v1 [Gossypium tomentosum] >TYI52376.1 hypothetical protein E1A91_D12G243800v1 [Gossypium mustelinum] >CAB4269415.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 187 bits (475), Expect = 8.71e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. NCBI nr
Match: XP_026424143.1 (60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026432177.1 60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026441364.1 60S ribosomal protein L37a isoform X2 [Papaver somniferum] >RZC91508.1 hypothetical protein C5167_027572 [Papaver somniferum])

HSP 1 Score: 187 bits (474), Expect = 1.24e-59
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKME+SQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEISQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. NCBI nr
Match: XP_016703693.2 (60S ribosomal protein L37a-like isoform X2 [Gossypium hirsutum] >XP_017625211.1 PREDICTED: 60S ribosomal protein L37a-like [Gossypium arboreum] >XP_030466307.1 60S ribosomal protein L37a [Syzygium oleosum] >KAB2070693.1 hypothetical protein ES319_A08G172200v1 [Gossypium barbadense] >KAF8027280.1 hypothetical protein BT93_E0247 [Corymbia citriodora subsp. variegata] >TYH06896.1 hypothetical protein ES288_A08G189800v1 [Gossypium darwinii] >TYI15503.1 hypothetical protein ES332_A08G190400v1 [Gossypium tomentosum] >TYJ23260.1 hypothetical protein E1A91_A08G179300v1 [Gossypium mustelinum])

HSP 1 Score: 187 bits (474), Expect = 1.24e-59
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. NCBI nr
Match: WP_200848866.1 (50S ribosomal protein L37Ae, partial [Klebsiella pneumoniae])

HSP 1 Score: 187 bits (475), Expect = 1.53e-59
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 19  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 78

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 79  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 110

[Close]

BLAST of Cp4.1LG08g02450 vs. NCBI nr
Match: XP_010055398.1 (60S ribosomal protein L37a [Eucalyptus grandis] >KCW71856.1 hypothetical protein EUGRSUZ_E00333 [Eucalyptus grandis])

HSP 1 Score: 186 bits (473), Expect = 1.76e-59
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVG+WGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGVWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL
Match: A0A1U7XSD1 (60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.22e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL
Match: A0A6J1ICH2 (60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.22e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL
Match: K4CND1 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.22e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL
Match: A0A1U8LTA9 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.22e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL
Match: A0A5D2BQ56 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G165400v1 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.22e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 177.9 bits (450), Expect = 3.6e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG08g02450 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 175.3 bits (443), Expect = 2.3e-44
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g02450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHE4	2.1e-45	98.91	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
P0DKK1	2.7e-45	96.74	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	2.7e-45	96.74	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9ZRS8	2.3e-44	96.70	60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1	[more]
Q9SRK6	5.1e-44	94.57	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]

BLAST of Cp4.1LG08g02450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002282974.1	8.71e-60	100.00	PREDICTED: 60S ribosomal protein L37a [Vitis vinifera] >XP_004133971.1 60S ribos...	[more]
XP_026424143.1	1.24e-59	98.91	60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026432177.1 60S r...	[more]
XP_016703693.2	1.24e-59	98.91	60S ribosomal protein L37a-like isoform X2 [Gossypium hirsutum] >XP_017625211.1 ...	[more]
WP_200848866.1	1.53e-59	100.00	50S ribosomal protein L37Ae, partial [Klebsiella pneumoniae]	[more]
XP_010055398.1	1.76e-59	97.83	60S ribosomal protein L37a [Eucalyptus grandis] >KCW71856.1 hypothetical protein...	[more]

BLAST of Cp4.1LG08g02450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U7XSD1	4.22e-60	100.00	60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 ...	[more]
A0A6J1ICH2	4.22e-60	100.00	60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1	[more]
K4CND1	4.22e-60	100.00	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1	[more]
A0A1U8LTA9	4.22e-60	100.00	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV...	[more]
A0A5D2BQ56	4.22e-60	100.00	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G165400v1 PE=...	[more]

BLAST of Cp4.1LG08g02450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	3.6e-45	94.57	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	2.3e-44	93.41	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..92 e-value: 4.1E-45 score: 153.8
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 4..88 e-value: 1.8E-39 score: 133.7
IPR002674	Ribosomal protein L37ae	TIGRFAM	TIGR00280	TIGR00280	coord: 1..91 e-value: 2.0E-34 score: 115.8
IPR002674	Ribosomal protein L37ae	HAMAP	MF_00327	Ribosomal_L37Ae	coord: 4..72 score: 19.305292
None	No IPR available	PANTHER	PTHR48132	ZGC:171772	coord: 1..92
None	No IPR available	PANTHER	PTHR48132:SF2	60S RIBOSOMAL PROTEIN L37A-2	coord: 1..92
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 10..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g02450.1	Cp4.1LG08g02450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome