Cp4.1LG08g02060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g02060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionB3 domain-containing protein Os04g0386900-like
LocationCp4.1LG08: 3011780 .. 3014178 (+)
RNA-Seq ExpressionCp4.1LG08g02060
SyntenyCp4.1LG08g02060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATGTGAGTGTTGATTGCATTGCGTCTTCTAATCTGTTATTTTTTTTTTCGATCATCTAATCATGGATTTTATCCGATTCTCCCCTTTCCGCAGTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGGTAAGTTCTCGCTCTCATGGAAATCACTCAGAAATTTTAGTAACAGTTATAGTTATAAACGGAATTGGATTGTGCGTGCTTGCATTGTCAAAACCACTAGATTTTACGGCCAATCCAGGAAGTATGTGGCTGGTTTGATCACCAATAGTTTTGGTATCAAGATTAGCCAGTGTGAAAACTATTAGAAAACCAGTTCATAATAAAAGTTTTGTAAAAATAAGTGTTCGTTTAGTATTTGATTTTCCTTAGAAGAATTAACTGAAAGATTGTCATGAACTTTTAGAATCATTCAATCTCATGATTATTAGGACTTGACATTACCAAATTCTGGGCTACTACCAGAGGCTCAAATTAGCCTATTTTTCAGCATATATATGAATCAGCTTAATTGTAAGGGACTATCATATCTTCATTTGTAGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

mRNA sequence

CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

Coding sequence (CDS)

ATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

Protein sequence

MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
Homology
[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy Swiss-Prot
Match: Q7XLP4 (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 0 

Query: 5   EKPPTEPTEMQPQ---NSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 64
           E  P  P E +P+      +LPL GKPY   I+ KSHV P   + +P  F  +LP+   P
Sbjct: 65  EAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTP 124

Query: 65  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV---IKF 124
           A L   G+ W + + G R  + L+   WR F  DN L+ GD CVFEL+         ++F
Sbjct: 125 ATLSWRGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEF 184

Query: 125 RVQILRGDIPFELHEKFSGESRNTPILID 148
           RVQ+LR +IP  +  +  G +  TPI+ID
Sbjct: 185 RVQVLRAEIPARIRGRAGGYTSATPIVID 212

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy Swiss-Prot
Match: Q9LHY9 (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 54/145 (37.24%), Postives = 79/145 (54.48%), Query Frame = 0 

Query: 7   PPTEPTEMQPQN-SRILPL-SGKPYHGVILSKSHVAPICNMFMPAKFHSVL--PAIMIPA 66
           PP  P     ++     PL +G P+   +++KSH+ P   M++P +F   L  P     A
Sbjct: 31  PPPPPASGSGEDWEATTPLAAGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAA 90

Query: 67  VLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIEC-SSSVIKFRVQ 126
           VL+  GK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  ++F+VQ
Sbjct: 91  VLHSGGKSWATSYCGHLKMKKLDA-GWSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQ 150

Query: 127 ILRGDIPFELHEKFSGESRNTPILI 147
           ILRG +P E+     G + + PILI
Sbjct: 151 ILRGGLPAEVVTS-KGLTSDQPILI 173

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy Swiss-Prot
Match: Q8RYD1 (B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-06
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 0 

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 -GWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy Swiss-Prot
Match: Q6AV21 (B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0619800 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-05
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 19  SRILPLSGK-PYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYG 78
           S++    GK  + G+ LS  + A     ++P K H  L       VL C+G  W+I+   
Sbjct: 430 SKLAGSGGKGKFRGLELSSRYAA----SYLPDKNHQTL-------VLQCKGMIWQINLVV 489

Query: 79  NRR---GKA-LDTKQWRKFVNDNHLKCGDACVFEL 109
            RR   GK    T  WRKF +DN L+ GD C+FEL
Sbjct: 490 RRRYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFEL 513

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: XP_023539026.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo] >KAG6597214.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028685.1 B3 domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310 bits (793), Expect = 1.58e-106
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: XP_022974195.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974197.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975683.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975684.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975685.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima])

HSP 1 Score: 308 bits (788), Expect = 9.15e-106
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV+KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: XP_022941967.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_022941973.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata])

HSP 1 Score: 306 bits (784), Expect = 3.73e-105
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: XP_038903804.1 (B3 domain-containing protein Os04g0386900-like [Benincasa hispida] >XP_038903811.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida])

HSP 1 Score: 254 bits (650), Expect = 1.02e-84
Identity = 115/147 (78.23%), Postives = 134/147 (91.16%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQ KPPTE   M+PQ+  ILPLSGKPYH  ILSKSHVAPIC++ +PAKFHS+LPAI+I
Sbjct: 1   MQSQRKPPTELPTMEPQDGEILPLSGKPYHAFILSKSHVAPICSLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL+C+GKKW IDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLFCQGKKWTIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPF+LH+KFSGE+++TPI ++
Sbjct: 121 QILRGDIPFQLHDKFSGETKDTPIYLE 147

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: XP_022147119.1 (B3 domain-containing protein Os04g0386900-like [Momordica charantia])

HSP 1 Score: 244 bits (624), Expect = 9.35e-81
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM +PAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
             VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK GDACVFEL+ECSSS +KFRV
Sbjct: 61  HGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIP +LH+KFSGES++TPI ID
Sbjct: 121 QILRGDIPVQLHDKFSGESKDTPIKID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match: A0A6J1IDC2 (B3 domain-containing protein Os04g0386900-like OS=Cucurbita maxima OX=3661 GN=LOC111472772 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 4.43e-106
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV+KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match: A0A6J1FTK2 (B3 domain-containing protein Os04g0386900-like OS=Cucurbita moschata OX=3662 GN=LOC111447171 PE=4 SV=1)

HSP 1 Score: 306 bits (784), Expect = 1.81e-105
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match: A0A6J1D033 (B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN=LOC111016130 PE=4 SV=1)

HSP 1 Score: 244 bits (624), Expect = 4.53e-81
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM +PAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
             VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK GDACVFEL+ECSSS +KFRV
Sbjct: 61  HGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIP +LH+KFSGES++TPI ID
Sbjct: 121 QILRGDIPVQLHDKFSGESKDTPIKID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match: A0A0A0L3V3 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 1.77e-78
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

[Close]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match: A0A6J1CYN6 (B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN=LOC111015996 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 8.38e-77
Identity = 107/147 (72.79%), Postives = 127/147 (86.39%), Query Frame = 0 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M +PAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 147
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPVQLHDKFRGESRDTPINID 147

[Close]
BLAST of Cp4.1LG08g02060 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 0 

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 -GWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]
BLAST of Cp4.1LG08g02060 vs. TAIR 10
Match: AT1G49480.1 (related to vernalization1 1 )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 30/97 (30.93%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 28  PYHGVILSKSHVAPICNMFMPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDT 87
           PY  V+L  S++   C M++P+ F    L  I     L    K+W +     + G+A  +
Sbjct: 127 PYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCL-YKAGRAKFS 186

Query: 88  KQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV 121
           + W +F  +N++  GD CVFEL+     V++   FRV
Sbjct: 187 QGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222

[Close]
BLAST of Cp4.1LG08g02060 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 30/97 (30.93%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 28  PYHGVILSKSHVAPICNMFMPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDT 87
           P+  V+L  S++   C M++P+ F    L  I     +    K+W +     + G+A  +
Sbjct: 242 PFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCL-YKAGRAKFS 301

Query: 88  KQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV 121
           + W +F  +N+L  GD CVFEL+     V+K   FRV
Sbjct: 302 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XLP45.7e-2138.26B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=399... [more]
Q9LHY99.3e-1637.24B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=399... [more]
Q8RYD13.9e-0632.00B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2... [more]
Q6AV213.3e-0536.84B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=399... [more]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539026.11.58e-106100.00B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo] >KAG... [more]
XP_022974195.19.15e-10698.64B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196.... [more]
XP_022941967.13.73e-10598.64B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_02294197... [more]
XP_038903804.11.02e-8478.23B3 domain-containing protein Os04g0386900-like [Benincasa hispida] >XP_038903811... [more]
XP_022147119.19.35e-8176.87B3 domain-containing protein Os04g0386900-like [Momordica charantia][more]
BLAST of Cp4.1LG08g02060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IDC24.43e-10698.64B3 domain-containing protein Os04g0386900-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1FTK21.81e-10598.64B3 domain-containing protein Os04g0386900-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1D0334.53e-8176.87B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN... [more]
A0A0A0L3V31.77e-7875.51TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 ... [more]
A0A6J1CYN68.38e-7772.79B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN... [more]
BLAST of Cp4.1LG08g02060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G33280.12.8e-0732.00AP2/B3-like transcriptional factor family protein [more]
AT1G49480.11.3e-0430.93related to vernalization1 1 [more]
AT3G18990.11.3e-0430.93AP2/B3-like transcriptional factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 34..126
e-value: 0.0033
score: 23.9
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 34..119
e-value: 7.7E-12
score: 45.0
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 67..126
score: 10.785477
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 33..124
e-value: 2.29079E-17
score: 70.4345
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 12..126
e-value: 5.1E-19
score: 70.2
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 26..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR31391:SF64B3 DOMAIN-CONTAINING PROTEIN OS04G0386900coord: 3..138
IPR044837B3 domain-containing protein REM16-likePANTHERPTHR31391B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATEDcoord: 3..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02060.1Cp4.1LG08g02060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding