Cp4.1LG08g01520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g01520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription factor MYB41-like
LocationCp4.1LG08: 3437280 .. 3441046 (+)
RNA-Seq ExpressionCp4.1LG08g01520
SyntenyCp4.1LG08g01520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAAGAAAAGAAAATAAAAACCCAATTTCTGGTTTGGATGTTATGGCGCCAAATTCGAATCAGTAATCGCAAGAGTTGCTCCGTTTGTGGTTGAAGTTTTCAATGGACTAGAGATCGTGTCTTCTTCTTCTTCATCCTCATCGTTCAGCTTCGCAGTGAGTTAAATTTCTGCGTTCTTATTCTGCAAATTCATACAAAATGGAGAAGATTCGTTTGTTTTCTTTCAATTTTTGGTTTCTTGTCGATTCATCAGACCGATGCTTGCAGATTTTGAAGCTAAAGCCCTCGAATCTCAGCTTTTCTCGCTTTACATTCCCTGATTTTGTTCGATTTCAACTCGTATACCTAATTTCTAAAAGGAGTAATGATATTACAACATTTTATTTCGTCTTTATCTCTCTTTTTCCTATGCATTTATTATCACAACTTTCGATTTCTCTGTTAGATGAAAGTAACTCTGTTTTGTTTTCTGTATTTGTCTAATTCAGTTTCGACTCGTTTTGACCTCGATTATTGTTGAAATCATGTGAATATTGTCTTCTGTTCATACTGGTGCTTACTATCAGTGATTAAGATTTCAGATGATCTTAAATTGAATGTGTATCAACGAAGTTTGTTCCATTTTAGATTGGGGAAAAAAAGTAAGGTGGATTTATTTGTGTATTTTAGGTATATGTACACATGTTTATCTTAATCTCGGGGAAATTTCTCACTATTTAGAGTTTATTACTAAAATTAGGCAGGAAAGCTTAATGATTATGAAGTTTCAGCAAGAAATCAGGTTTGTTTTTTTTTACTTGCGGAGCAACCAGATTGAACGAGGGAAGTGGAAATTTTGAAAGACCCACAAGGGAACAGTGTTGGAGGTCTGGTCTTGTCATGGTATGTCCCGTAGTATGAATGTTATTTTCATCATAATAAATGCGTCCCAAATCTCTCTCTGTTCAATAAATGCTAGTCTGCATTGTGAGAATCCGCAATTAATTCTTCTCCTTATTCGCCTATTTCTTATATCAATTGTGCGTAAATTGTAAAACCTCAGAATAAGAAATCTCTGCATTAACTCCCTCAATTTTTTTGGGACAATTTTTACTTTCAATGATGATTCAATTCTTCCTATGCTCAATCGTGTCAGTATTTATTGCAAGAACCAGCTTGAAACTTGCTGATTCTTGTCCTTCCCCTTCAGACCCACTTACCCATTAATTTCCCCTCTTTCAATTTTAGTTGATTGAGATAATGTTTCCCCTTTCGCATGGCTTTCCTCCTCCTTTCTCTGTAATTCGCTCTGAAAATTTGCAAGGGAAGGATCTAGGTTCTTTCTTTCACTCTGGTCACTAGAGGGTGGGGTGTCCCTGCCTCTGATTTTGAAAGTTGTGAGATGGGAAGAGCGCCTTGTTGCGATAAGGGGCTAAAGAAAGGGCCGTGGACATCAGAAGAAGATGAGCTTCTTATCAATTATATCAAGCAAAACAATGGCCATGGAAGCTGGAGATCGCTCCCCAAGCTTGCAGGTTTAGTAATCCAAAATTTTCGCTAGTTCCCACTTGTCATCATTCATTCTGCAGTCTCTGTTTATTATAACATTTTCATTACTTCGAAATTTATTGTCACTGGAGTATAAAAGACAAAGGAGGAAGAAGAAGAATATGCTCGAGTAGTTGGGTCCTTTACCCTACTCTCCCTTTCGATCTCCCAATATCTCATTCATCTCCTTTCTGCGATCTCATAGATTTTTTACAGCAGTTTCTTCCCCTGCTTTGTTACCCAAAAATGTGCAGAAAAAAGTTCCCAGCTGTTAGGAATGATCAACACCTTAATTACTCCATGGGACTCCTCTCCCAACAATCTTCAACACCAGCATCGTTATAGATTTTCTGTTCTGGTAATTTTTTTTTTTACTATAAACGTTCTGTGTGGCCAACAAATGATGCTAAACTAGACCAAAGAGTTCTGCGAATTTTTCTTCTATCAAGGAATGCCTGCCTCAGCCATCCTTTAGCATAAGAATAGCTAGTCTTTTGATTTATCTTTAGTTTCTGATACAGCCTCCACTGCAGTCCATGAGATATCGAGTATGGTCACCAGGACATTTTTTATGCCCATACTTGCTCTGTTAGTAGCCCAGCTCTATTCTTAAACAGGACGCACCAACAATTTTCTTGCACATTTGGAAGGGAACGATTGTTTTCTTACGTTCTTCATTGATTTATCTCTCTCACTTTGATAAGGATGGTCTTTGTACATGATGTGTTTATTTTAGGTCTTCTACGATGTGGGAAGAGCTGCCGTTTGAGGTGGACAAACTATCTAAGACCTGATATCAAACGTGGCCCCTTTACCACCGAGGAAGAGAAGCTTGTTATTCAGCTCCATGGAATTCTCGGAAACAGGTGATAATACTACATTGTTTTCTTCCTGAATAATATCATAGATTTGATTGCTAAAGTTTATGGTACCTTTTCTTTCATTGCATCCGAACTAATTGATTAGTTTAAATTTTGTCATGATGTTTTGCTATATGTTAGTTTACACTGTTCGTTGCTTGTTTTTAGTCTTGAAGCTTCACCTATTCCTAATGGTGGTCTCTTTATTAGTCAGTTAAAATATGTTCGAGATATTTTTACTCGTGCTCATTTGTTCGACAGCAAACCAGTCCACAAGGTGCAGACCCCACTCCGTCTCTGCCCCTCTTTCTTTCTTCGTCTAAAATACACCCCAGAGTCTGTATTCTCAGTTTCTGCCCCCTTCTTCCTCTCTTGTTCTAACTGCCGCCACGTCCACCCTCCTTCACAGTCACGATCGAGCCCTCTCTCTTCTTCACTTGCCCTTTTCTCAGACAGAGCCATCACCAGCGAAAGTTCTCTTAGACAACATTAGAGGTCTTTCTTTCTGACCTTCGGCTATAGTGAAAGATGTTTAGCCTGTATTTGTCCATTGGAACCACTTTCAATAAAACTCAAGGCTAAGTTTTAACTCTAAATGGTAGTTTGTAAAACCTGAAGGCCATTCATATTAAAATGTTTGCTTTAACTGAGGTTTCGAGATTCTTTGAAAATCAGGATTAAAAAAATCATCATTCTCGGACTCATCTACTTTGTTCAACATGTTTTAGCCTTGAATTGTACTGATCGAGTGCTTTGCAGGTGGGCTGCTATTGCTTCTCAACTACCAGGAAGAACAGACAACGAAATCAAGAACTTATGGAACACCCACCTCAAGAAACGTCTTCTTTGCACAGGCATTGACCCTCAGACACATGAACCCTTCAACTCTCGCAGCTCCTTCTCTACAGCACCGGCATCACCGAGCACCCGCCACATGGCACAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCTCGACTTTCAAAGGAATCATCACTCTTCACCCTCCTCCCCACGGAAAGAACAACTGATTCTGACTTTTTTCTTCAAATATGGAACTCTGAAATTGGTGAATCATTTCGTAGGTGCAGGGAAGACAAAACAACATGCCAAAGCCAAAGTCCCATATCCTCATCAACTAAATACGAGTCGGTTTTCGTCGTCGCTACCGACAACGTAGTCGATTACACCGGTGCCTCCTCAGCCATGGAAAGCAATAATGAAAATGAAGAAACGGAATACAAAAACTTCAAACCAATAGCTGACATTCTGATGTCGAAGTCTGATTCATCGAGTGTGAACGAGTTCGAGGAGTCATCAGACAGTGCATTCGAACTGCTTCTTGACTTCCCCATTAACAATGACATNATAATATCATAG

mRNA sequence

TGAAAAGAAAAGAAAATAAAAACCCAATTTCTGGTTTGGATGTTATGGCGCCAAATTCGAATCAGTAATCGCAAGAGTTGCTCCGTTTGTGGTTGAAGTTTTCAATGGACTAGAGATCGTGTCTTCTTCTTCTTCATCCTCATCGTTCAGCTTCGCAGCAGGAAAGCTTAATGATTATGAAGTTTCAGCAAGAAATCAGTTGATTGAGATAATGTTTCCCCTTTCGCATGGCTTTCCTCCTCCTTTCTCTGTAATTCGCTCTGAAAATTTGCAAGGGAAGGATCTAGCCTCCACTGCAGTCCATGAGATATCGAGTATGGTCACCAGGACATTTTTTATGCCCATACTTGCTCTGTGCAGGGAAGACAAAACAACATGCCAAAGCCAAAGTCCCATATCCTCATCAACTAAATACGAGTCGGTTTTCGTCGTCGCTACCGACAACGTAGTCGATTACACCGGTGCCTCCTCAGCCATGGAAAGCAATAATGAAAATGAAGAAACGGAATACAAAAACTTCAAACCAATAGCTGACATTCTGATGTCGAAGTCTGATTCATCGAGTGTGAACGAGTTCGAGGAGTCATCAGACAGTGCATTCGAACTGCTTCTTGACTTCCCCATTAACAATGACATNATAATATCATAG

Coding sequence (CDS)

ATGTTTCCCCTTTCGCATGGCTTTCCTCCTCCTTTCTCTGTAATTCGCTCTGAAAATTTGCAAGGGAAGGATCTAGCCTCCACTGCAGTCCATGAGATATCGAGTATGGTCACCAGGACATTTTTTATGCCCATACTTGCTCTGTGCAGGGAAGACAAAACAACATGCCAAAGCCAAAGTCCCATATCCTCATCAACTAAATACGAGTCGGTTTTCGTCGTCGCTACCGACAACGTAGTCGATTACACCGGTGCCTCCTCAGCCATGGAAAGCAATAATGAAAATGAAGAAACGGAATACAAAAACTTCAAACCAATAGCTGACATTCTGATGTCGAAGTCTGATTCATCGAGTGTGAACGAGTTCGAGGAGTCATCAGACAGTGCATTCGAACTGCTTCTTGACTTCCCCATTAACAATGACATNATAATATCATAG

Protein sequence

MFPLSHGFPPPFSVIRSENLQGKDLASTAVHEISSMVTRTFFMPILALCREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIADILMSKSDSSSVNEFEESSDSAFELLLDFPINNDXIIS
Homology
[Close]
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match: XP_023539258.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179 bits (455), Expect = 3.82e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD
Sbjct: 197 CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSSVNEFEESSDSAFELLLDFPINND
Sbjct: 257 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match: KAG6597145.1 (Transcription factor MYB17, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028614.1 Transcription factor MYB41 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (435), Expect = 4.64e-50
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKYESVFV+ATDNVV+YTG SSAMESNNENEETEYKNFKPIAD
Sbjct: 197 CREDKTTCQSQSPISSSTKYESVFVIATDNVVNYTGGSSAMESNNENEETEYKNFKPIAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSS NEFEESSDSA ELLLDFPINND
Sbjct: 257 ILMSKSDSSSANEFEESSDSALELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match: XP_022947245.1 (transcription factor MYB41-like [Cucurbita moschata])

HSP 1 Score: 170 bits (431), Expect = 1.86e-49
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKYESVFV+ATDNVV+YTG SSAMES NENEETEYKNFKPIAD
Sbjct: 197 CREDKTTCQSQSPISSSTKYESVFVIATDNVVNYTGGSSAMESYNENEETEYKNFKPIAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSSVNEFEESSDSA ELLLDFPINND
Sbjct: 257 ILMSKSDSSSVNEFEESSDSALELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match: XP_022974567.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 166 bits (420), Expect = 8.39e-48
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKY+SVFV+ATDN VDYTG SS M SNNENEETEYKNFKP+AD
Sbjct: 197 CREDKTTCQSQSPISSSTKYDSVFVIATDNGVDYTGGSSTMYSNNENEETEYKNFKPMAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSSVNEFEESSDSA ELLLDFPINND
Sbjct: 257 ILMSKSDSSSVNEFEESSDSALELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match: XP_016898895.1 (PREDICTED: transcription repressor MYB6 [Cucumis melo] >KAA0048976.1 transcription repressor MYB6 [Cucumis melo var. makuwa] >TYK17590.1 transcription repressor MYB6 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 7.01e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSP+SSS K ES+F+VAT + VDYTG SSAMESNNENEETEYKNF+ + D
Sbjct: 198 CREDKTTCQSQSPLSSSVKCESLFIVATHDRVDYTG-SSAMESNNENEETEYKNFQSMTD 257

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           I+MSKSDSSS NEFEESSDSA  LLLDFPINND
Sbjct: 258 IVMSKSDSSSANEFEESSDSALGLLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match: A0A6J1G6C0 (transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111451166 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 9.00e-50
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKYESVFV+ATDNVV+YTG SSAMES NENEETEYKNFKPIAD
Sbjct: 197 CREDKTTCQSQSPISSSTKYESVFVIATDNVVNYTGGSSAMESYNENEETEYKNFKPIAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSSVNEFEESSDSA ELLLDFPINND
Sbjct: 257 ILMSKSDSSSVNEFEESSDSALELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match: A0A6J1IAL7 (transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111473263 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 4.06e-48
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSPISSSTKY+SVFV+ATDN VDYTG SS M SNNENEETEYKNFKP+AD
Sbjct: 197 CREDKTTCQSQSPISSSTKYDSVFVIATDNGVDYTGGSSTMYSNNENEETEYKNFKPMAD 256

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           ILMSKSDSSSVNEFEESSDSA ELLLDFPINND
Sbjct: 257 ILMSKSDSSSVNEFEESSDSALELLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match: A0A0A0L8X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122500 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 3.55e-40
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CR+DKTTCQS SP+SSS K ES+F+VAT N VDYTG SSAMESNNENEETEYKNF+ + D
Sbjct: 51  CRDDKTTCQSLSPLSSSVKCESLFIVATHNRVDYTG-SSAMESNNENEETEYKNFQSMTD 110

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           I+MSKSDSSS NEFEESSDSA  LLLDFPINND
Sbjct: 111 IVMSKSDSSSANEFEESSDSALGLLLDFPINND 142

[Close]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match: A0A5D3D1U6 (Transcription repressor MYB6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004600 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 3.39e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSP+SSS K ES+F+VAT + VDYTG SSAMESNNENEETEYKNF+ + D
Sbjct: 198 CREDKTTCQSQSPLSSSVKCESLFIVATHDRVDYTG-SSAMESNNENEETEYKNFQSMTD 257

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           I+MSKSDSSS NEFEESSDSA  LLLDFPINND
Sbjct: 258 IVMSKSDSSSANEFEESSDSALGLLLDFPINND 289

[Close]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match: A0A1S4DT66 (transcription repressor MYB6 OS=Cucumis melo OX=3656 GN=LOC103484167 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 3.39e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 49  CREDKTTCQSQSPISSSTKYESVFVVATDNVVDYTGASSAMESNNENEETEYKNFKPIAD 108
           CREDKTTCQSQSP+SSS K ES+F+VAT + VDYTG SSAMESNNENEETEYKNF+ + D
Sbjct: 198 CREDKTTCQSQSPLSSSVKCESLFIVATHDRVDYTG-SSAMESNNENEETEYKNFQSMTD 257

Query: 109 ILMSKSDSSSVNEFEESSDSAFELLLDFPINND 141
           I+MSKSDSSS NEFEESSDSA  LLLDFPINND
Sbjct: 258 IVMSKSDSSSANEFEESSDSALGLLLDFPINND 289

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g01520 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g01520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539258.13.82e-53100.00transcription factor MYB41-like [Cucurbita pepo subsp. pepo][more]
KAG6597145.14.64e-5094.62Transcription factor MYB17, partial [Cucurbita argyrosperma subsp. sororia] >KAG... [more]
XP_022947245.11.86e-4994.62transcription factor MYB41-like [Cucurbita moschata][more]
XP_022974567.18.39e-4891.40transcription factor MYB41-like [Cucurbita maxima][more]
XP_016898895.17.01e-3981.72PREDICTED: transcription repressor MYB6 [Cucumis melo] >KAA0048976.1 transcripti... [more]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G6C09.00e-5094.62transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111451166 PE... [more]
A0A6J1IAL74.06e-4891.40transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111473263 PE=4... [more]
A0A0A0L8X93.55e-4080.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122500 PE=4 SV=1[more]
A0A5D3D1U63.39e-3981.72Transcription repressor MYB6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S4DT663.39e-3981.72transcription repressor MYB6 OS=Cucumis melo OX=3656 GN=LOC103484167 PE=4 SV=1[more]
BLAST of Cp4.1LG08g01520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g01520.1Cp4.1LG08g01520.1mRNA