Cp4.1LG08g01190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g01190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Mediator of RNA polymerase II transcription subunit 2-like
Location	Cp4.1LG08: 3655650 .. 3657215 (+)
RNA-Seq Expression	Cp4.1LG08g01190
Synteny	Cp4.1LG08g01190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTACCTCAGTGCAGTTGCCGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCGAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGTAACTTTTAGTGTTAAATTAATTGCTCAAATCATTTGTTTGTTTCAATTGATTCACTTTTTCGTGGTTCTTATGCTAATGTTTTTCCATGGGCGGATTGATTAGGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTATCGCTCTCTCTCTTAATCTCTGTATTGAATCGAGAAAAGTGGAATTTTCTGTTTTGCTGATTTAAAAAAGAAATTGAGAGTTATGGAGAGAGATGGATTATTGTCTCTGTTTTGATTTTTCACTTGGTAATTTGGAAATTTGCTCATACGAGTAATGTTCTAGTTTTCACACATTCTGATCACAAAACTCTCAAGAGATGCGTTCATTAGGATGAATAATGGAGAGAAAAGTATAATGGCTAGTGACTGTGAGGCCCCAGTAGACTGGAGAGGACACCAAAGGCCTCTGCTCTTCCATCTCTTGGATAGATAGAGAGGGAAGGCAGAACTTGTTTAGGTTTTTCCGGTGTCCGAGCTTGCCCCACAGATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTAAGCGAAGGCCTCTACTCTTCCAACCCCTTGGATAGATGGAGTGGGAAGGCAGAACTTGTTTTGGTTTTTCCAGTTTTCGAGCTTGCCCCACAGATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTAAGCAAATAGCTTCTGCTCCAATAATAGATCACTCTGCAGGTGGTAGTAAGAGATGTGAATCTGTCTTCCCACTGTGTGATTTTTTGAGCAATTGGCCAACTGTGGACGAATATCAAGTTTCGTTTGCCTTTTCTGAACATGTCCGTGTATATTAATACCATTTGAAAGTCTCATTGTTTTCGTTTAATTATGTGCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTTTCTCTTGATTTCTGATCTCTTGATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTATTCTTTTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTATAGAAAAATCCATATTC

mRNA sequence

AGAGAGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAGTACCTCAGTGCAGTTGCCGAGTAAATATCGGGTTAGGGTTTAAGAAAACGGTGACGTGCGGCGAATCGAGGAAATTTCCGGCGGCCGGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTTTCTCTTGATTTCTGATCTCTTGATTGCCTGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTATTCTTTTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTATAGAAAAATCCATATTC

Coding sequence (CDS)

ATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCTGCGAAAAAGCTCCAAGCAAAGAAGAACAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGA

Protein sequence

MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK

Homology

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: XP_022941890.1 (uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 uncharacterized protein LOC111473288 [Cucurbita maxima] >XP_023540792.1 uncharacterized protein LOC111801059 [Cucurbita pepo subsp. pepo] >KAG6597121.1 hypothetical protein SDJN03_10301, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028585.1 hypothetical protein SDJN02_09766 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (340), Expect = 1.57e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: XP_022147302.1 (uncharacterized protein LOC111016287 [Momordica charantia])

HSP 1 Score: 122 bits (307), Expect = 1.70e-34
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNLSRRK QHEFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 80
          VKTKLTAAAKAKAAQAMELD
Sbjct: 61 VKTKLTAAAKAKAAQAMELD 80

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: KAA0048973.1 (mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.88e-34
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTAAAKAKA+QAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: KGN56523.1 (hypothetical protein Csa_010072 [Cucumis sativus])

HSP 1 Score: 121 bits (303), Expect = 6.94e-34
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. NCBI nr
Match: XP_030457135.1 (uncharacterized protein LOC115678006 [Syzygium oleosum])

HSP 1 Score: 118 bits (296), Expect = 8.11e-33
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDLRREK EKEKAAKKLQAKKNKMKVDGSGKKKKG  GFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKAAKKLQAKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          +KTKLTA AKAKAAQAMELDK
Sbjct: 61 LKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL
Match: A0A6J1IED7 (uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 7.62e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL
Match: A0A6J1FV29 (uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC111447114 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 7.62e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL
Match: A0A6J1D208 (uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016287 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 8.25e-35
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNLSRRK QHEFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 80
          VKTKLTAAAKAKAAQAMELD
Sbjct: 61 VKTKLTAAAKAKAAQAMELD 80

[Close]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL
Match: A0A5A7TZC8 (Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001950 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.36e-34
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTAAAKAKA+QAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL
Match: A0A0A0L493 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 3.36e-34
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 81
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cp4.1LG08g01190 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-20
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNL++RK QHE++L++EK+ ++K  KKL A KNKMKVDGSGKKKKG  GF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKKG--GFSVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 81
          +KTKLT  AKAKAAQAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g01190 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g01190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941890.1	1.57e-39	100.00	uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 unchar...	[more]
XP_022147302.1	1.70e-34	91.25	uncharacterized protein LOC111016287 [Momordica charantia]	[more]
KAA0048973.1	4.88e-34	90.12	mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. ma...	[more]
KGN56523.1	6.94e-34	90.12	hypothetical protein Csa_010072 [Cucumis sativus]	[more]
XP_030457135.1	8.11e-33	88.89	uncharacterized protein LOC115678006 [Syzygium oleosum]	[more]

BLAST of Cp4.1LG08g01190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IED7	7.62e-40	100.00	uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288...	[more]
A0A6J1FV29	7.62e-40	100.00	uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1D208	8.25e-35	91.25	uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5A7TZC8	2.36e-34	90.12	Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. ...	[more]
A0A0A0L493	3.36e-34	90.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g01190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45860.1	2.1e-20	73.75	unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR36745	OS02G0824400 PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g01190.1	Cp4.1LG08g01190.1	mRNA