Cp4.1LG07g11590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g11590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 9719806 .. 9721186 (+)
RNA-Seq ExpressionCp4.1LG07g11590
SyntenyCp4.1LG07g11590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCATGAAACCCCATTTGAAAGAACCTTCGCCGGAGGCCGAAATCCTCCACCAAGTCCCTAAATTCCGGCCCCTCGCCTCCGACGATCGGCGGGCTCGGAGTCCGAAAATGGATGGGGGAGGATTGTTCTGTGGTGTTGAGGGGAGAGTTCAGATTGCGGTGGCGGAATGGTCGGCGTTTTGGTTGATGGTGGAGTGGGCCGCGGTGGTTGTGGTGGTGACGGCGGTGGCTCGGATGGCGGCGATGATGGTTGCTCATTCGTTGCTGTTAAGCTATTATGCTTGGTTGTTGATGGAGGTAAATGCTTTGAAATTCCATCATTCTTTAATTTTGTTGAATTTCCTTACCATTCCTTTGATTCTGTTTATTGCATTATGTTTGGTTTATGAAGAAATTGTGGTAAAAGAATGAAATGAGGGATGAGGATCCATTTTTGTGAGATCTCCCGTCGGTGGGAAAGAGAAACGAAACATTATTTACGAGGGTATGGAAACCTTTCCTTAACGGACCTGTTTTAACACGTTGAGGGGAAGCTTGGAAGGGAAAGTCCAAGAAAGACAATATTTTAGTGGCGGGTTTGGGCTACTTGAAAATGGTATCAGAGCTAGACACCGAGCAGTGTTTCAGTGTGGATGTGCTGGTCCCCAAGGAGGTGGATTATGAGATCCCACATCAAGGAACTCTGGCCTCCAAGAGGGTGAATCGTGAGATCCCACATTGATTGAACTAGCCTCCAAGGTGGTGGATTGTGAGATCTCACGTTGGTTGGAAAGGGACTCTGGCCCCCAAGAGGTCGATTGTGCGATCCCACATCGATTGAAAAGGGAGGCTAGCCTCCAAAGTGGTGGATTTTGAGATCTCACATCGGTTGGAAAGGGATTCTGGCCCCAAAGGGGGTGAATTGTGAGTTCTCACATCGATTGAATAGGGATGCTGGCATTCAAGAAGATAGATTGTAAGATCTCACATCGGTAGGGGAGGGACTCTAGCCCCAAAGGGGTGGATTGTGAGATTCCACATTCGTTGGAGAGAGGAACGAAGGAAACCTCTCTTTAATAGGTACGTTTTAAAACTTTGAGAAAAAATCCAGAAAAGAACATCACCAATAACAATATCTGCTAATAATGAACTTGAGCTGTTCGAACCGTTGAAGAAATTTGAAGTATTGTTTCACCATTGTAGGCTTGTGCTGAAAAGAAAGGAGGGCTTATGGTTAGTCTTAGTTTCATTCTTCTCAGCAATTTGATGGGTTTTCTCAGCTAAACAGGTTCGTGGAGACTTGATAAAAGCTTAAGAGTATTGTGGAAGAGCGATCTCGGCAAATCCAAGCGATGGGATTGTGTTATCGATGTATGTCGATTTGATATTGAAGAATCGTAA

mRNA sequence

AACCATGAAACCCCATTTGAAAGAACCTTCGCCGGAGGCCGAAATCCTCCACCAAGTCCCTAAATTCCGGCCCCTCGCCTCCGACGATCGGCGGGCTCGGAGTCCGAAAATGGATGGGGGAGGATTGTTCTGTGGTGTTGAGGGGAGAGTTCAGATTGCGGTGGCGGAATGGTCGGCGTTTTGGTTGATGGTGGAGTGGGCCGCGGTGGTTGTGGTGGTGACGGCGGTGGCTCGGATGGCGGCGATGATGGTTGCTCATTCGTTGCTGTTAAGCTATTATGCTTGGTTGTTGATGGAGGTTCGTGGAGACTTGATAAAAGCTTAAGAGTATTGTGGAAGAGCGATCTCGGCAAATCCAAGCGATGGGATTGTGTTATCGATGTATGTCGATTTGATATTGAAGAATCGTAA

Coding sequence (CDS)

ATGGTCGGCGTTTTGGTTGATGGTGGAGTGGGCCGCGGTGGTTGTGGTGGTGACGGCGGTGGCTCGGATGGCGGCGATGATGGTTGCTCATTCGTTGCTGTTAAGCTATTATGCTTGGTTGTTGATGGAGGTTCGTGGAGACTTGATAAAAGCTTAAGAGTATTGTGGAAGAGCGATCTCGGCAAATCCAAGCGATGGGATTGTGTTATCGATGTATGTCGATTTGATATTGAAGAATCGTAA

Protein sequence

MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDGGSWRLDKSLRVLWKSDLGKSKRWDCVIDVCRFDIEES
Homology
[Close]
BLAST of Cp4.1LG07g11590 vs. NCBI nr
Match: XP_022966026.1 (uncharacterized protein LOC111465733 [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 2.00e-17
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDG 43
          MVGVLVDG VGRGGCGGDGGGSDGGDDGCSFV VKLLCLVVDG
Sbjct: 23 MVGVLVDGVVGRGGCGGDGGGSDGGDDGCSFVVVKLLCLVVDG 65

[Close]
BLAST of Cp4.1LG07g11590 vs. NCBI nr
Match: XP_023545630.1 (uncharacterized protein LOC111805006 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 7.44e-06
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 1   MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDGGSWRLDK 50
           MVGV VDGG+GR GCGGDGGGSDGGDDGC              GSW  D+
Sbjct: 102 MVGVSVDGGIGRDGCGGDGGGSDGGDDGCF-------------GSWDADR 138

[Close]
BLAST of Cp4.1LG07g11590 vs. NCBI nr
Match: XP_022999169.1 (uncharacterized protein LOC111493633 isoform X1 [Cucurbita maxima])

HSP 1 Score: 51.6 bits (122), Expect = 2.66e-05
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 1   MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDGGSWRLDK 50
           +VGV VDGG+GR GCGGDGGGSDGGDDGC              GSW  D+
Sbjct: 102 VVGVSVDGGIGRDGCGGDGGGSDGGDDGCF-------------GSWDADR 138

[Close]
BLAST of Cp4.1LG07g11590 vs. NCBI nr
Match: KAG6599396.1 (hypothetical protein SDJN03_09174, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030381.1 hypothetical protein SDJN02_08728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 50.1 bits (118), Expect = 9.42e-05
Identity = 29/50 (58.00%), Postives = 31/50 (62.00%), Query Frame = 0 

Query: 1   MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDGGSWRLDK 50
           MVGV VDGG+G  GCGGDGGGSDGGDDGC              GSW  D+
Sbjct: 102 MVGVSVDGGIGCDGCGGDGGGSDGGDDGCF-------------GSWDADR 138

[Close]
BLAST of Cp4.1LG07g11590 vs. ExPASy TrEMBL
Match: A0A6J1HN87 (uncharacterized protein LOC111465733 OS=Cucurbita maxima OX=3661 GN=LOC111465733 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.68e-18
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDG 43
          MVGVLVDG VGRGGCGGDGGGSDGGDDGCSFV VKLLCLVVDG
Sbjct: 23 MVGVLVDGVVGRGGCGGDGGGSDGGDDGCSFVVVKLLCLVVDG 65

[Close]
BLAST of Cp4.1LG07g11590 vs. ExPASy TrEMBL
Match: A0A6J1KGA4 (uncharacterized protein LOC111493633 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493633 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.29e-05
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 1   MVGVLVDGGVGRGGCGGDGGGSDGGDDGCSFVAVKLLCLVVDGGSWRLDK 50
           +VGV VDGG+GR GCGGDGGGSDGGDDGC              GSW  D+
Sbjct: 102 VVGVSVDGGIGRDGCGGDGGGSDGGDDGCF-------------GSWDADR 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g11590 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g11590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966026.12.00e-1795.35uncharacterized protein LOC111465733 [Cucurbita maxima][more]
XP_023545630.17.44e-0660.00uncharacterized protein LOC111805006 [Cucurbita pepo subsp. pepo][more]
XP_022999169.12.66e-0558.00uncharacterized protein LOC111493633 isoform X1 [Cucurbita maxima][more]
KAG6599396.19.42e-0558.00hypothetical protein SDJN03_09174, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG07g11590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HN879.68e-1895.35uncharacterized protein LOC111465733 OS=Cucurbita maxima OX=3661 GN=LOC111465733... [more]
A0A6J1KGA41.29e-0558.00uncharacterized protein LOC111493633 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Cp4.1LG07g11590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g11590.1Cp4.1LG07g11590.1mRNA