Cp4.1LG07g11580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g11580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 9702085 .. 9706063 (+)
RNA-Seq ExpressionCp4.1LG07g11580
SyntenyCp4.1LG07g11580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGTAAAGAGTGCTTTCTTCTTACAATCTCCTTATGAGATCAGCTTCCCCTTCTTCTTTCACTACTTGGGCGTTGTTATTTCTGTAAGTTCGTTCTCCATTTTTGAAGTTCTTAGCTTCTTCCAATTGCCAATTTGTGAATGATTTTCTTTGGGATTACCTACTTGTATTATGGATCATGAAACACTGCCCGGAAATTTCCGTTCCATCAAAATTGGGCTCTGATTACGCGGGCTAGTTAGGGTTTGGGATGAATTATTGAGAGAAGTATTCAACGGCCGCATTGCGGTGGTCGTTTTCAAATTCCATACTTTCTTGCGTTGCGGATATTGGACATTGCGTAATGCCCACCAACTGTTCGATGAAATTCCTCTATGAAATGGTATATTTTACTTCTTCATCCGTCTTCATTTCCCCTCAATGTGGCTGTCACTTTCCAAAATTCTGCTATTTTCGTGTGACGAATATCGAACTTTGCATATTGCCCACCGAATGTTCGGTGAAATTCTATTATAAATTGGTATAATTGTACATATTCTCCCTTCTTCATTCCCTCTCAATGTGGCTGTCGCTTCCAAATTTATACTCCTTTCTGATGATGAACATTGAACATTGCATAGTGCCCACCAATTGTTTGACTAATAAGTGGTATGCTCTTACATGTTCATCCTTCTTTGCTCCCCCACACATAAAAGGAAAAAAGTAATCCATTGAGAATTGAAAGGTTTTAGATTCAAAAGGTAGCTGTTTTCTGATGATGAACATTGAACATTGAACATTGAACATTGCATAGTGCCTACCAATTGTTTGACTAATAAGTGGTATGCTCTTACATGTTCATCCTTCAAAAAGTAATCCCCTGAGAATTGAAATTTGTGGTTTTAGATTCAAAGGGTAGCTGTTTTTCTGTTTGGTATATCAAATTTTCTCTAGAACCTTTGATTTTGTAAGTACAAGTTATGATGTCGGATCTGTACAATGAAGAAAGGCTTGCACCCTCTAATGCAATGGATATCATAATGTCACTCAGAGTGGCAAATTGATGCACGTCAATGATGACCAAGGTACACCTTCTTGGTAAAGTCTACCACTTCAGAGCCAAGCGTCGACCGGCTGAAAATGCTGGGCAAGTTGCCAAGTTCAAATGACGTGACGAGATGCAGCTCAAGGATCAACTATTTCCTTGGATCATTATGGATTCGTTTCGATAACATGACCTTGTGAATATTAGGAATTCAAAGTTTCCTTCTACTCAATGGAGTTTATCCCTTTTCATAGTCTAGTGTTTTATAGGAAACTGAGTTCATTCCTATATTGACTTTGATGTGCTTTTACCTTTACTATGCAGCTCAAGGATCAACTGTTTCGTTGGATTATTATGGATTTGTTTCGATAACATGGCCTTGTGAGTATTAGGAATTTAAAGTTCCCTTTTACCCAACGGAGTTCATCCCTTTTCATAGTCTAGCATTCTATAGAAACTGAGTTATTTCTTATATTGGCTTTGATATGCTTTTACTTTTACTATGCAGCTCGAGGATCAACTGTTTCATTGGATCATTATGGATTCGTTCGATAACATGACCTTGTGAGTATTATGAATTTAAAGTTCCCTTCTACTTAATGGAGTTCGTCCCTTTTCATAGTCTAGTGCTTTATAGGAAACTGAATTCTTTCTTATATTGACTTTGATATGCTTTTACCTTTACTATGCAACTCAAGGATCAACTGTTTCGTTGGATCATTATGGATTCGTTTCAATAACATGACCTTGTGAGTACTATGAATTTAAATTTCCCTTCTACTCAACGGAGTTCATCCTTTTTCCTAGTCTAGTATTTTACAGGAAACCGAGTTATTTCTTATCTTGGATATGCTTTTACATTTGTAAAAGCATATCCAAGTTGCATTCCTTGCATTTGTGTTCAATGAATATGATCGTTTTCCATCTTATGCATCAAATTGTATAATCAAACTCGCAGGGCTTGTTATGCCACTAAGAGCTTATTAGAATAGTAGAGTTGTTGACTTAAGTATACCTTAGTAGTTAGGTATTTAATATCTCCCCTAGTTCCTATGAATTTTAGTTTTGAATCCTTCCTCTTTTGTAACGTAACATTGTGAAAGAAAAGTTGGGTATTTTTTTCGACTACTTCGGTGCCACGAGAGGGAATAATTATTTGGAAAGTTAGAACAACGTAGCCGAAGATTTTATACCGTTGGATGTTAGAGAGAGAAACAAAAAACTATCGGATAATTATGCATCAAAGGTTTAGAAACACATTGTTTTTGTTTTTTGGAGCATTAATTTTGGACCCATTTGGTAACGTTTTTGTTTTTGTTTCTTGTTTTCTATCGCTCGTCACTCTTTTTTAATAAAAGAAATGAATATCCAAAATTTTAGTGTTATATTTATTATGCATTTTAGAAGTAATAAAATGATAAAATAATACTTTTATTTATATTTTGAAAGAAAAAAAAAAAAAAAACTAGATTTTTTAGTTGTTTTAAGATTTTCACGCATCGAGTGAGAGACTAGAAACAAGAACAGGTATCAGTTTTTCAAAAACACACGAAGACTTCTATGTGTAATGTTTTGATGCATTTGTTTCCCTTTGATTCTATTCATTACATTTTTCAAAAACACACGAAGACTTCTATGTGTAATGTTTTGATGCATTTGTTTCCCTTTGATTCTATTCATTACATTAACATTCCTCGGCCCCTCGAAATCTCTTAATCATTAAATCAAGTTTTACTCTCATCATTGGTTGGAAGAAAACGGTTTCTAAAGATCTCGTGAACATTAGATTTACCATTCCTTTATAAGATTCTACATCATTTGAACTTTATATATCAGTTTTACGTGTTATGGTTAGTATCAAAAGTACTTCACACGAACATCAAAGGAAGACATACAAAGCTATAAGGGAACTTCCTTGTAGTTGGTGATACCTGGAACCATCCTACTTAGCTACTTCTTCCAGCACTGGAACGTTCTTCCATGTATCTTCTAATCCGTTCATTTGCAACGGTGGCAACGAGAAGACGCTAACGGTCGAGCTCCTGCTTCGGATTTCCTTCAAAACCCGTAATGCAGATACAGTGCTTTTCATATAAAGCGACTCCATATACTCTATCTCTGAAAGTTCCTTGGTTGCCTTGAGCAGATCATCAATGTTGGTGGTGGCAGCCTTCGTAGGAGCACCGACTTCATCGACTCCATTCGAACCAGAAGGAGGCTGCTCATTCAAAGGGAAGAGGAGATCCAACATCAGCTCACACTGCTTTACGAGCGTGTATAGCAAGTCGGTCGTAAAGAAAGGCTGTTGCAGAACTTTCTGACTGTAGGGCAAGCGGATGAGCGCGCCAGTCCTTTTGTCATACTTCTTTAGAATCTTCACAAGCCCTATAAAAAGGTATGCAAATTGTCGCTTAGATGATTTGAGCAATAACGAATTACTTCAGTCTTACAGAGTGTTCATCTTTTTCATAGGCAACTGAAGCATATTCTACGCACAAGGAATTGATTCAGCGGCATGTGGCCACAATTTCAAGATCCCAAGTAAGTAAAGAAATCATTATGTGCCGTAAGAACATAAAAAAGCATAAAGTTCATCAATACTGAAGAATTTTCATCATAATGAAAGATGGAGAGCTTGACCACAAAAGGGTGTAAATGCATTCAACCATGCCAAGTGCACCAATCAATGCATAAACGTAGAGAAAGGGTAAAGGAAAAGCAAAGGGAAAATAATGCATACCTGTAAAGTTAAGGGCACTATAATTCTCCAGTAGAACCATTTCTCCATGGAAGTCCACAATTTCCTTGCGAATTTTAATCATCTCTTCATTGGAATCCATTGCTTTTCCTACCCTGTCCTGTAGCTCCTGAATTATTCAAAAAGGAAAGTGGAAGCAATTTGGTTATCAGCTTGAAGACCTGTATTGTTTGATTGGTTGTAGTTTCTAGAGATGA

mRNA sequence

CACGTAAAGAGTGCTTTCTTCTTACAATCTCCTTATGAGATCAGCTTCCCCTTCTTCTTTCACTACTTGGGCGTTGTTATTTCTGTAAGTTCGTTCTCCATTTTTGAAGTTCTTAGCTTCTTCCAATTGCCAATTTGTGAATGATTTTCTTTGGGATTACCTACTTGTATTATGGATCATGAAACACTGCCCGGAAATTTCCGTTCCATCAAAATTGGGCTCTGATTACGCGGGCTAGTTAGGGTTTGGGATGAATTATTGAGAGAAGTATTCAACGGCCGCATTGCGGTGGTCGTTTTCAAATTCCATACTTTCTTGCGTTGCGGATATTGGACATTGCGTAATGCCCACCAACTGTTCGATGAAATTCCTCTATGAAATGCTCAAGGATCAACTGTTTCGTTGGATTATTATGGATTTGTTTCGATAACATGGCCTTCTCGAGGATCAACTGTTTCATTGGATCATTATGGATTCGTTCGATAACATGACCTTCACTGGAACGTTCTTCCATGTATCTTCTAATCCGTTCATTTGCAACGGTGGCAACGAGAAGACGCTAACGGTCGAGCTCCTGCTTCGGATTTCCTTCAAAACCCGTAATGCAGATACAATCATCAATGTTGGTGGTGGCAGCCTTCGTAGGAGCACCGACTTCATCGACTCCATTCGAACCAGAAGGAGGCTGCTCATTCAAAGGGAAGAGGAGATCCAACATCAGCTCACACTGCTTTACGAGCGTGCAACTGAAGCATATTCTACGCACAAGGAATTGATTCAGCGGCATGTGGCCACAATTTCAAGATCCCAAAGATGA

Coding sequence (CDS)

ATGGATTCGTTCGATAACATGACCTTCACTGGAACGTTCTTCCATGTATCTTCTAATCCGTTCATTTGCAACGGTGGCAACGAGAAGACGCTAACGGTCGAGCTCCTGCTTCGGATTTCCTTCAAAACCCGTAATGCAGATACAATCATCAATGTTGGTGGTGGCAGCCTTCGTAGGAGCACCGACTTCATCGACTCCATTCGAACCAGAAGGAGGCTGCTCATTCAAAGGGAAGAGGAGATCCAACATCAGCTCACACTGCTTTACGAGCGTGCAACTGAAGCATATTCTACGCACAAGGAATTGATTCAGCGGCATGTGGCCACAATTTCAAGATCCCAAAGATGA

Protein sequence

MDSFDNMTFTGTFFHVSSNPFICNGGNEKTLTVELLLRISFKTRNADTIINVGGGSLRRSTDFIDSIRTRRRLLIQREEEIQHQLTLLYERATEAYSTHKELIQRHVATISRSQR
Homology
[Close]
BLAST of Cp4.1LG07g11580 vs. NCBI nr
Match: KAG7021243.1 (hypothetical protein SDJN02_17931, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 47.8 bits (112), Expect = 2.63e-04
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 83  HQLTLLYER--ATEAYSTHKELIQRHVATISRSQ 114
           H  T +Y +  ATEAYSTHKELIQRHVATISRSQ
Sbjct: 36  HCFTSVYSKSVATEAYSTHKELIQRHVATISRSQ 69

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g11580 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g11580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021243.12.63e-0476.47hypothetical protein SDJN02_17931, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG07g11580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g11580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g11580.1Cp4.1LG07g11580.1mRNA