Cp4.1LG07g11370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g11370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Dynein light chain
Location	Cp4.1LG07: 9651282 .. 9652708 (-)
RNA-Seq Expression	Cp4.1LG07g11370
Synteny	Cp4.1LG07g11370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACCAAACTATGCTCTCTCGAGATCGTGATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAACGTATTGTTCTATATCGACAAACTTTTTTTTTAGCTTCGCAGATCGTTAACGGATTTCAAATTTTTGAAAAATTAAAGAACTGGGTCTCGTAACACGAACGAATGTTATTGAAATCAAACAATTTTCAAACGGGCATAGTTTTTTTTCTTTTCGAGAATGAAAATTGTAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTTGAGACATAATTGAAGTGGCCAATAGGAAAAGGATCCGACAAGGCATGTGTTTAGATGAGTAAACACATAGTGATTAGCAAATATTTTAAGCTAACAATTTGATATATTCATTCAAATGGAGTCCTTCCTTTTTCATGTAATCCATGTGCATTACTTCATTGCTTAATAATTTTTAATTTTTTCAATCATATTCTAAAATTTTCCCTTATTTCTAAATTAATATCACGAAGATTCGTTAAGAGATGAGAACTGATCAGGGTTATGGAAATTTTGAGATCGAGATTGAATCGTAATAAAAAAAATGATTTTGAGAAGTTGTTTTAGTCCCTCCTGTATTGTTAGGTTTCTGTCTAATACGTTCGATAACTTGAAAAAGTTTCTAATAGTTTTGTTAATTTTTGAAAAAAATCATAATATGTTACAAATTTATTAGACATAAAATTAAAAGTGTACGAGTGCTCAAACCCGAAAGAAATTAAAAAAAAATATATTTTTTAATCTATATAAAAAAGAAAAAACTAATTGAATTGGGCCTAATGCAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGAATGTAAAGGCAACTTTTATTATATTGTACAAAACCAATTTATTCTTATTATTTCTTC

mRNA sequence

TGAACCAAACTATGCTCTCTCGAGATCGTGATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGAATGTAAAGGCAACTTTTATTATATTGTACAAAACCAATTTATTCTTATTATTTCTTC

Coding sequence (CDS)

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGA

Protein sequence

MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKATE

Homology

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 104 VKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFG 163
           + V  +DMP+ MQ  A  C  ++++  E    + +A  +KKEFDK + P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 164 SFVTHSTGCFLYFSMEELYILLFR 188
           SFVTH T  F+YF++ +  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DMPE MQ  A  CA +   +LEK +  K +A  +KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-13
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  A  CA +   +LEK +  K +A  +KKEFD+ H P WHCIVG +FGS+VT
Sbjct: 13  ADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVT 72

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 73  HETKHFIYFYLGQVAILLFKS 90

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  +  CA +   +LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  +  CA +   +LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: XP_023538230.1 (uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384 bits (985), Expect = 3.18e-134
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 195

[Close]

BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: KAG7021256.1 (hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367 bits (941), Expect = 1.52e-127
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGGDGDG GG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AKGGGDGDGSGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 193

[Close]

BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: XP_022938230.1 (uncharacterized protein LOC111444374 [Cucurbita moschata])

HSP 1 Score: 367 bits (941), Expect = 2.08e-127
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 69

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGGDGDG GG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 70  AKGGGDGDGSGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 129

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 130 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 189

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 190 LYILLFRTKIQKATE 202

[Close]

BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: XP_022965961.1 (uncharacterized protein LOC111465683 [Cucurbita maxima])

HSP 1 Score: 353 bits (906), Expect = 3.28e-122
Identity = 182/195 (93.33%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           M T+NKQMKGGFKSFYKSRDGA +VQACESVSVDK  VYKYNWLGRKSKK VHQHGG RG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESVSVDKAYVYKYNWLGRKSKKAVHQHGGPRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGG GD GGG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AKGGGGGDEGGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEK SSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 121 RCARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 193

[Close]

BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: XP_022143180.1 (uncharacterized protein LOC111013113 [Momordica charantia])

HSP 1 Score: 300 bits (767), Expect = 5.16e-101
Identity = 160/196 (81.63%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQ+KG FKSFYKSRDGARD  A +   +D+V VYKYNWLGRKSKK   QHGG RG
Sbjct: 1   MATLNKQIKG-FKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGRRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKM-VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 120
            +GGG G G GG G  GRK+ VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQ+QA
Sbjct: 61  MEGGGGG-GDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQA 120

Query: 121 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180
           FR ARRSYDSLEK SSK MA+++KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 121 FRSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180

Query: 181 ELYILLFRTKIQKATE 195
           +LYILLFRTKIQKATE
Sbjct: 181 KLYILLFRTKIQKATE 194

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL
Match: A0A6J1FJ58 (uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC111444374 PE=4 SV=1)

HSP 1 Score: 367 bits (941), Expect = 1.01e-127
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 69

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGGDGDG GG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 70  AKGGGDGDGSGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 129

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 130 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 189

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 190 LYILLFRTKIQKATE 202

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL
Match: A0A6J1HN27 (uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683 PE=4 SV=1)

HSP 1 Score: 353 bits (906), Expect = 1.59e-122
Identity = 182/195 (93.33%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           M T+NKQMKGGFKSFYKSRDGA +VQACESVSVDK  VYKYNWLGRKSKK VHQHGG RG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESVSVDKAYVYKYNWLGRKSKKAVHQHGGPRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           AKGGG GD GGG  TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AKGGGGGDEGGG--TEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEK SSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 121 RCARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 195
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 193

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL
Match: A0A6J1CN34 (uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013113 PE=4 SV=1)

HSP 1 Score: 300 bits (767), Expect = 2.50e-101
Identity = 160/196 (81.63%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQ+KG FKSFYKSRDGARD  A +   +D+V VYKYNWLGRKSKK   QHGG RG
Sbjct: 1   MATLNKQIKG-FKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGRRG 60

Query: 61  AKGGGDGDGGGGGGTEGRKM-VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 120
            +GGG G G GG G  GRK+ VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQ+QA
Sbjct: 61  MEGGGGG-GDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQA 120

Query: 121 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180
           FR ARRSYDSLEK SSK MA+++KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 121 FRSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180

Query: 181 ELYILLFRTKIQKATE 195
           +LYILLFRTKIQKATE
Sbjct: 181 KLYILLFRTKIQKATE 194

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL
Match: A0A0A0LKY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 1.38e-98
Identity = 160/203 (78.82%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVS---VDKVSVYKYNWLGRKSKKVVHQHGG 60
           MATLNKQMKG FKSFYKSRDG R+V + E +S   VDK S+YKYNWLGRKSKK   QHGG
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  SRGAKGGGDGDGGGGGGTE-----GRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120
                    G GGG GG       GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMP
Sbjct: 61  G--------GGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120

Query: 121 EMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGC 180
           E+MQIQAFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGC
Sbjct: 121 EIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGC 180

Query: 181 FLYFSMEELYILLFRTKIQKATE 195
           FLYFSME+LYILLFRTKIQKA E
Sbjct: 181 FLYFSMEKLYILLFRTKIQKAIE 194

[Close]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL
Match: A0A1S3C671 (uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 7.08e-96
Identity = 159/199 (79.90%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGA-RDVQACESVS---VDKVSVYKYNWLGRKSKKVVHQHG 60
           MATLNKQMKG FKSFYKSRDG  R+V + E VS   VDK S+YKYNWLGRKSKK   QH 
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GSRGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQ 120
           G  GA G G+   GG      RK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQ
Sbjct: 61  GGGGAGGIGEEIMGG------RKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQ 120

Query: 121 IQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYF 180
           IQAFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYF
Sbjct: 121 IQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYF 180

Query: 181 SMEELYILLFRTKIQKATE 195
           SME+LYILLFRTKIQKA E
Sbjct: 181 SMEKLYILLFRTKIQKAIE 192

[Close]

BLAST of Cp4.1LG07g11370 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-39
Identity = 82/128 (64.06%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 71  GGGGTEGRKMVVEGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRS 130
           GGG  E      EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFRCAR +
Sbjct: 86  GGGAAE------EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMT 145

Query: 131 YDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLF 190
            DSLEK SSK MA+NLKKEFDK +GPAWHCIVGSSFGSFVTHSTGCF+YFSM++LY+LLF
Sbjct: 146 LDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLF 205

Query: 191 RTKIQKAT 195
           +TK++ A+
Sbjct: 206 KTKVRPAS 207

[Close]

BLAST of Cp4.1LG07g11370 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-20
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 104 VKVLVSDMPEMMQIQAFRCARRSYDSLE-KLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 163
           V+V  SDMP   Q +AF  +R   ++   K  +K +A+ LKK+FD  +GPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 164 GSFVTHSTGCFLYFSMEELYILLFRTKIQ 192
           GS+VTHSTG FLYF ++++Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]

BLAST of Cp4.1LG07g11370 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 102 LQVKVLV--SDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVG 161
           L+ K +V  SDMP  MQ+QA   A ++ D  +    K +A ++KKEFD+ +G  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 162 SSFGSFVTHSTGCFLYFSMEELYILLFR 188
           S+FG F THS G F+YF +E L  L+F+
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Cp4.1LG07g11370 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 103 QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 162
           + KV  +DMP  MQ+QA + A +S D  +   S  +A ++KKEFD+ +G  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 163 GSFVTHSTGCFLYFSMEELYILLFR 188
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Cp4.1LG07g11370 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 73  GGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEK 132
           GG   + ++ + R S+  VE    S  +  +  +  +DM + MQ +A   A     + EK
Sbjct: 12  GGAPAQTILDDRRSSLPEVE---ASPPAGKRAVIKSADMKDDMQKEAIEIA---ISAFEK 71

Query: 133 LS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRT 189
            S  K +A N+KKEFDK HG  WHCIVG +FGS+VTH T  F+YF +++  +LLF++
Sbjct: 72  YSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g11370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	2.6e-13	45.24	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	3.4e-13	49.38	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q39580	5.8e-13	49.38	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
P61285	1.3e-12	48.15	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	1.3e-12	48.15	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of Cp4.1LG07g11370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538230.1	3.18e-134	100.00	uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]	[more]
KAG7021256.1	1.52e-127	96.92	hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938230.1	2.08e-127	96.92	uncharacterized protein LOC111444374 [Cucurbita moschata]	[more]
XP_022965961.1	3.28e-122	93.33	uncharacterized protein LOC111465683 [Cucurbita maxima]	[more]
XP_022143180.1	5.16e-101	81.63	uncharacterized protein LOC111013113 [Momordica charantia]	[more]

BLAST of Cp4.1LG07g11370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ58	1.01e-127	96.92	uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1HN27	1.59e-122	93.33	uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683...	[more]
A0A6J1CN34	2.50e-101	81.63	uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0LKY0	1.38e-98	78.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
A0A1S3C671	7.08e-96	79.90	uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=...	[more]

BLAST of Cp4.1LG07g11370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	2.8e-39	64.06	Dynein light chain type 1 family protein	[more]
AT1G23220.1	2.2e-20	51.69	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.7e-15	45.45	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.1e-14	43.53	Dynein light chain type 1 family protein	[more]
AT4G15930.1	4.1e-14	39.32	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 99..188 e-value: 3.0E-36 score: 136.4
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 104..188 e-value: 8.3E-30 score: 103.0
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 76..194
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 92..188 e-value: 2.0E-30 score: 106.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 101..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..78
None	No IPR available	PANTHER	PTHR11886:SF37	DYNEIN LIGHT CHAIN-LIKE PROTEIN	coord: 76..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g11370.1	Cp4.1LG07g11370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding