Cp4.1LG07g10940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g10940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S11-like
Location	Cp4.1LG07: 10028339 .. 10030010 (-)
RNA-Seq Expression	Cp4.1LG07g10940
Synteny	Cp4.1LG07g10940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTAATAAGCCCATTTTATTGTCCCGTCTGCTCTATAACTCTCTGAAGCAGGTTTAGGGTTTCTTCCAGTAATCGAAGTCTCCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGTTCTAATCATGGCGGAACAGGTTTCCATTCAATCGACGGCTTTCACTTCTTTTTTCAGTTCAAACCTTCTTTGTTTCCGTTTTATTGTCTTCAGCGTTCTGTATCTGAACTCTTCGTTCTTTTTCTGCAGACCGAGAAGGCGTTTTTGAAACAACCCAAAGTTTTTCTCTGGTAAACGAATTGATTTACTTTTCTCTGTTTGATTTACTATGGCATATGTTCGAGTTCTTATTTTTTATTGTTTGCTGTAATCCTGATTTTATTTCTGTTTTTCGGATTAGTTTTTGTGATTCTCTTTACTGATTTAGTTATTGTTCTGTTTCGATACAAAATAGCTCCAAAAAGATTGGGAAGGGAAAGCGACCTGGAAAGGGCGGGAACCGTTTCTACAAGAGTATTGGATTAGGATTCAAGACGCCTAGGGAAGCCATTGAAGGTTCTGTCTTCTTAAACTCCGATTGCTTTGTTTGTTGGTTTGGTAATATGAATGTGTTTATTCTTTTAACTTTCGAATTCGCTCAAGCATTAAACGTTGGTAGCTCAACGTACTGTTTATTCTGAACTGGTTGTCTTCCTCTATAGAATTTTCACTTTGTGGTTTTATCACTGATAACAAACAATGTGCTGTGATCATGTTAATCTGGGTTGAGATTCATTGGTACCTTCGTTTCCAATAATCAGTAATGCTGTAGAATGGGTGGTTGTTTCTGATTAAGAACGTATTGTAAAAACTTTATTAGCTGTAATGTTGATGATACTATAACCTTCTAGTCATAGAATGGGCGGTTGTTTCTGCATTAATACAATGATACCTATTGGATAAATGGATGAAAAAAAGAATGTTTAATCCTTAAAGCATCATCAATTATACTATGTACCTTATGTGTTTTTAGTACGGTCCGATATTTAGGCGTTTCTTGCTCACATGTTCTCTGAATTGTTGCTGGAAATAAGGATTATCGAGTGAAAAGGTGAACGTCTTAGGAATGAAGCACTTTGCTTCGCAACGCTGTTTACTTACAATTCTGTTGTGTTCAAGCAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCTATTAGGGGCCGCATTTTAGCTGGAACTTGCCATAGTGCTAAGATGGTCAGAACCATTATTGTCAGGAGGAACTACCTACATTATGTCAAGAAGTATCAGAGGTACTTCCCCGATCCCCCTCCCACCACTTCACCACCCGATTTTTCTCTTCATGATTTTGATGTATTTTGTTTCTTGTCTCCCTCAGGTATGAGAAAAGGCACTCCAACATTCCTGCCCATATTTCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGTACATCTAGATATGCTAAATTATTCCCATTGATCCTCGTGATATGATAAATTCTTCCCATTGAGTCTCACATTTATCCTTTGAATTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTTATTCCTGCAGGATCCTCAACTGGGAAGAAAGCGTTTGCTGGAATTTAA

mRNA sequence

TGCTAATAAGCCCATTTTATTGTCCCGTCTGCTCTATAACTCTCTGAAGCAGGTTTAGGGTTTCTTCCAGTAATCGAAGTCTCCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGTTCTAATCATGGCGGAACAGACCGAGAAGGCGTTTTTGAAACAACCCAAAGTTTTTCTCTGCTCCAAAAAGATTGGGAAGGGAAAGCGACCTGGAAAGGGCGGGAACCGTTTCTACAAGAGTATTGGATTAGGATTCAAGACGCCTAGGGAAGCCATTGAAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCTATTAGGGGCCGCATTTTAGCTGGAACTTGCCATAGTGCTAAGATGGTCAGAACCATTATTGTCAGGAGGAACTACCTACATTATGTCAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCCCATATTTCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTTATTCCTGCAGGATCCTCAACTGGGAAGAAAGCGTTTGCTGGAATTTAA

Coding sequence (CDS)

ATGGCGGAACAGACCGAGAAGGCGTTTTTGAAACAACCCAAAGTTTTTCTCTGCTCCAAAAAGATTGGGAAGGGAAAGCGACCTGGAAAGGGCGGGAACCGTTTCTACAAGAGTATTGGATTAGGATTCAAGACGCCTAGGGAAGCCATTGAAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACTGTCTCTATTAGGGGCCGCATTTTAGCTGGAACTTGCCATAGTGCTAAGATGGTCAGAACCATTATTGTCAGGAGGAACTACCTACATTATGTCAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCCCATATTTCTCCTTGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTTATTCCTGCAGGATCCTCAACTGGGAAGAAAGCGTTTGCTGGAATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI

Homology

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-80
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRF+KSIGLGFKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS G KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 1.7e-79
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KK GKGKRPGKGGNRF+KSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+G KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-79
Identity = 145/156 (92.95%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGK+PGKGGNRF+KSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-STGKKAF 156
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS + GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-79
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRF+K+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST--GKKAFAGI 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-78
Identity = 143/159 (89.94%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK  GKGKRPGKGGNRF+K+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of Cp4.1LG07g10940 vs. NCBI nr
Match: XP_022937629.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_023536745.1 40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo] >KAG7021195.1 40S ribosomal protein S11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323 bits (827), Expect = 2.37e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]

BLAST of Cp4.1LG07g10940 vs. NCBI nr
Match: XP_022965991.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 322 bits (825), Expect = 4.78e-111
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKLGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]

BLAST of Cp4.1LG07g10940 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312 bits (799), Expect = 4.57e-107
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 311 bits (798), Expect = 6.50e-107
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310 bits (793), Expect = 3.76e-106
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL
Match: A0A6J1FBR2 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111443978 PE=3 SV=1)

HSP 1 Score: 323 bits (827), Expect = 1.15e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL
Match: A0A6J1HN55 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111465711 PE=3 SV=1)

HSP 1 Score: 322 bits (825), Expect = 2.32e-111
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKLGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 2.21e-107
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 2.21e-107
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL
Match: A0A166HSZ0 (Ribosomal_S17_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003011 PE=3 SV=1)

HSP 1 Score: 308 bits (789), Expect = 7.42e-106
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFYKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFYKSVGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM+RTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGDVSIRGRILAGTCHSAKMMRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFAGI 158
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS G KKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]

BLAST of Cp4.1LG07g10940 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-80
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRF+K+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST--GKKAFAGI 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of Cp4.1LG07g10940 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-79
Identity = 143/159 (89.94%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK  GKGKRPGKGGNRF+K+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of Cp4.1LG07g10940 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-79
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRF+K+IGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFAGI 159
           GD V IGQCRPLSKTVRFNVLKVIPAGSS+ GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g10940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5M1	2.0e-80	92.45	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P17093	1.7e-79	91.82	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P25460	2.2e-79	92.95	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
P16181	2.9e-79	89.38	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]
P42733	1.9e-78	89.94	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]

BLAST of Cp4.1LG07g10940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937629.1	2.37e-111	100.00	40S ribosomal protein S11-like [Cucurbita moschata] >XP_023536745.1 40S ribosoma...	[more]
XP_022965991.1	4.78e-111	99.37	40S ribosomal protein S11-like [Cucurbita maxima]	[more]
XP_022952178.1	4.57e-107	96.86	40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma...	[more]
XP_038887258.1	6.50e-107	96.86	40S ribosomal protein S11-like [Benincasa hispida]	[more]
XP_023554629.1	3.76e-106	96.23	40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG07g10940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBR2	1.15e-111	100.00	40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111443978 PE=...	[more]
A0A6J1HN55	2.32e-111	99.37	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111465711 PE=3 ...	[more]
A0A6J1HZI1	2.21e-107	96.86	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ...	[more]
A0A6J1GJT3	2.21e-107	96.86	40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=...	[more]
A0A166HSZ0	7.42e-106	95.60	Ribosomal_S17_N domain-containing protein OS=Daucus carota subsp. sativus OX=792...	[more]

BLAST of Cp4.1LG07g10940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48930.1	2.0e-80	89.38	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G23740.1	1.3e-79	89.94	ribosomal protein S11-beta	[more]
AT4G30800.1	6.6e-79	89.31	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 121..131 score: 60.91 coord: 88..111 score: 37.33 coord: 131..138 score: 73.25
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 74..142 e-value: 7.0E-26 score: 90.2
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..158
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..157 e-value: 3.9E-83 score: 279.1
None	No IPR available	PANTHER	PTHR10744:SF24	40S RIBOSOMAL PROTEIN S11-1-RELATED	coord: 1..158
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 4..72 e-value: 4.5E-31 score: 107.1
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 54..143 e-value: 6.2E-34 score: 114.0
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 121..133
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g10940.1	Cp4.1LG07g10940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome