Cp4.1LG07g10820 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g10820
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal protein L18ae family
LocationCp4.1LG07: 9505627 .. 9511217 (-)
RNA-Seq ExpressionCp4.1LG07g10820
SyntenyCp4.1LG07g10820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTTGATAATATATAATAATAAAAAGAAAATTATTTTAAGGCTTTTCGTTATTTTTCAAGTCTCAAGAACGAGGGAGACAATTTTTCTGAGCTTTTAGCTGATGAGAGATGAAGGTGATCGTTGTTTGACGTTCAAATTTCCTTCTTACTTCAAGAAAACCGTGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTCGTTCGTTCCTACAATTCCATTTCTGATCCGTGGAAAGCGAGACAAATTGCATTTTCAGTCGCGTTTGTTCACCTCTTCCTCAATTCCGGTATCTTTTTCCTCTCGTTCTTATTTCGATGTTTCATTTTTCATCTTCTTTTTCTGTTTCTCTTCGATTTTTCTGCCGTGAGTTCATTAATTCGTGTTTGCAGTATTTTGTTCTTCGATTTCTCTTTTGTTTTGTTCGGTAATTGATGGATATTGCAGAACTTTCCGTTCGTTCTTTAACGATGGTATCTGCGACCTTTGGCTTCGCTTGGTTGAGGATTTGAGATAGGAGTTTAGGATTTTTGGTACCTGGAGAAGTTCGTAATTGCAATTCTTATCCCTTGTGCCTTTTATTCTTGACTTTGGCGTGGGAGCATCACTATGTTTCACGAAGTGCAATTTTAGTCAAGCTAGGTTATTTTATTACCAATTCATCGGATGGCTTGTGGAAGATGGAAAAGCTCCATAGGCTAGTGTCTTCAATTGAGTAGTTTTCTTTTTAGTCAACATGAAAGTCTGATGAATTTGATAAAAGAAACTTGGATTATTTGGATTTTAAATACCAAACTAGGGGGAATTTTCATTCCAGATGCAATTCTTCTGATTGCTGCATCTTGTCGGGTGTCATTTGATTATATTGTTCTAACTACTGAGTAGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGTGCAAACTTGAAGAGCTCATCCTTCCATAAACTCCACCTTCAACATGGATCCAAGTACCGTAATTCTTCTTATAACTTGGATTCCTCGTAATAATAATAAAAAAGAAGGCATGATTATGTGGGTGCAAAAGATGTTTTATTTTGTTGGGTTGTAACATAGTTCTTGCCTAGTAATTTCTTTAATATTCAAGGTTCATTAAGGTGTCTTGGACATTCATATGTGCCTATGCTCATTGTTATGCTTTCACTCCTTAGTTATACGTTTCATTAAAGAATGTAGTCACATTCAGAAATTGAAGCTAATTTCGTGTCTAATAATCGGTTTATGACACTCTGTTGGCAGTCTTCATGATAGCAATAACACAAGATCGAACTGAAAAAATAATTTTTACAAAATCGATGGAACAATTTCTTGAGTTGTGAACATGTTTTCTTGATTTTAAAAATGCAGAAGTTGAGCAGACAGTGCAACTGGTGGAATCCGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTCAAAGGTAAATCAGGGATAATAAAACTTGTTGAGAATTGTTGAGAGGAAGTCCCACGTTGGCTAATTTAGGGAATGATAATGGATTTATAAGTAACGAATACATCTCCATTAGTATAATGGATTTATAAGTAACGAATACATCTCCATTAGTATGAGGCCTTCTTGGGAAGTCCAATGTAAAGACATGAGAGCTTATGCTTAAAGTGGACAATATTATACCATTGTGGAGAGTCGTGATTCCTAACAATTTTATTACCTTATATTGGTTGCTGGAGTCTTTAGCTTGTCTAGTCATTTATGTCCAAAATGATTAATGATGAAAGCCATCCTTACATTATGTGCTTGTATTCACCTAGGCCAAGAAAAAGATGCGTGTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGTATTGGATGGTTCTCGTGAGTCTCGTGTAACTTTCTCTGTACAAACAATTTGGGGAACCTGTCGTCAAGTTTACTGATCTTACCTTTGTATCTTTGTCGTTCTTTTCAGTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGTAAGTGTTCCTTTTTTCTTTCCCACTCCCACCCCAACCATGAAAATCTTAGGAAAAACAAACATAATGACATCGAGTAGCCAAATTCCTTACATTGCTATGTATCTTGCCATCTCCTATGAGCTGTTCATTGAACATGATTCAGCTTCTAAAGAAGCAAAACAATTGTAAATGGTGCAGGCATTTGCTTGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCCCCCCTGTCTCCTCGACTCGCACTGCATTCTCTTTGCCCCTTCAGCCTTGGCAATACAGTCCCAAACAGAACAGCTTCCGTGGATATGAACATAAAGATCAAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCAAGAGAGAGTTGTCACATTTGTATCACACAAAGAACATATAATATATCGATCTTGTTTTATCCCAAGTTTACGTAACCTAATAAACAAAACAATCTACATTTCTCGACTTTTCATAACTGATTTTTCCTGAAGATCTACTCTACTTGAAGCCAGATCATCAAAGGTGATTTGAACTATGGTATGCATGCAACCTAATACATTGAGTGGAATGAGCATAAAACAGTTCCAAAACTATGCAGCTCATCCTTCTCTTTTGGAACTAATAACAATACAATGACATACCATCGAGTCCGTGAAGAAAAACCCTGAATGTCGCCGTTGTCATTGTACATTGATCCAACCTAAAACAGAACTGTTCGAGATTGATATTCATCATCCATGCCTTTCTTTTCATGAAGGGATTACAATTCATTGAGCCACAAACAATTCTGAAAATAAGCAATTCATCCTTGTTTAGGAACAGTAATAATGTTATAACAAAGAATAGGAAGGCAAGTCTGGACACTAATGGGAAACTTGAACGTCGTCGATCGACATTAATTCCAGCCTGAAGGGAATTATACAAGATCGATATCCATTGTCCCTGTTTTGCTGTCTCTTTTCATGAATGAGGGGAGCTTGGTTAACTTGAAACTACAATAATAACATATATGTATCCTATGAATGTGTACCCACAAAAATAATAATATAAAACCACAGAATATGTAGTGTTGCAGATTGGATCCCAAAATGACTGAATATTTCATTAACTCATTGATAAAACAAGTCATCTACATCTCCTCCAATGATGAAGTAAACTTGTAAACGTCTAAAAATCACTAGACAAAAATGGGCAAGCAAATGCAGCAGAATTTGATTTGCAATGCTACACATATGGCGTTTCGTTTAAGCCTTAGCTGCTAGCCGAACATATTTCTTCTCAACGGCAAATTTCGAACTTGAATTAATCTGGCAGTCACAGGTAACATCGTTAGCAAATGGAATGATGCTCGAAAGTGTCGAAGTTCAACTGTACTTCCAAAAACTCATAAATAGACAATAAATGATTTAGAAAATATAGATCAGAAGAGCAAACCTTTTGCTCGAGCATCTCAACAAGTTTAGTTTCATCTCCTGTGACACCGGATTCGCGAATAGACTTGAGAGTAAGTTTTCTTAGTTTTGACATCTTGAGAACACCGTCAGGACTCTGTCATATATACCCAACAAAAAAAAAACAGTACAATGTTAAAAAAAGTGACAGCAAGAAGAGGAATAGTACTGATGCAAAAAGGTCGTATTTCGCTTCTTTCTAAGGGTTACACTATAGCTATACTGCCGATATCAATAGAATCGGTCGTTATAAGAATAATTGATTAACATATCTTCACCACGGGGACCATTCCATCAAAGAAATATTTTAAGAAAAACTTAGATAATCAAGAATACTATATGAAACAAATTATCATTGACCATCATAAGAATGACAAGAAATATGTAAATAAGAGAATTGCACAAAAACGTACAGATTTCAAAATGGATGTTATCAGCTTCTTCCACTTGATCTTCTTTTCTTTCAGAGATTTGGACACTGTGATCTCATCCTTTATTGGCTTAATCTCGGCTTTGGTAGCCTGAATAACCTCCCCATTACCTCTATTTGGGTCATCGTCTTTAGTCTTTTCTGTCGAACCATCATCAAGTTTCCTCTTTTTCTTTGTATGTGAAGTACCATTTTCTGATTCCAAGTTTCCAAGTTCAGTTTCAGCTTTAAGCTGATCTTTCGATTTTTCTGATCCAACATGTCCATTTTCAACTACTTCGTCTTTGGGAGTTTCTTCAACTGCAGGCATTTTATCCGAAACAGCTTCCTCCGTCTGATTAGATTGTTTATTCGCTGCATGAAACCCACGGGCTTTTCCTTTGTGCTTCTTTCCTTCTGCATGAAGCAGCAAAGTCTGTTTACTAGTTGCCTTGGTATTGCAAAGACTGCAAAAAAACACATGATGCATAGTGTACATGCACAAAAATCGACTTAGAACGAGGTAGCCAATCTCAATAAATCATCATTACATATTTCAAGCGCTCTCTAATTTTAACAACCATTGAAATATTAACTCTTAAAACAAAAAAATTACGTCCATTAATCTAGAATATGTTTACCCACCAACAATTAACATTTCATATCAATAGGTACGTAGGCTCATATGCAACAAGGAGTAATATGTTTAACAGAACAATAAATAAAGATACCTGCAGAACCAAGGAGGGCGATTGGACAATCCAACGAGAATATCAAAATCAGGTTGCTGTTTTGAATCCTTGTTGGACTTCGGGGTGGTGACATTAATGGCTGCCCCTTGCCCCTTTGGACCATATTTTTCCTGCAAGAAGTAGGCAAAACTTGTAACAAGAAAAACAACACCGATGACCTGCTGAAGCTACAGCAGCAATGTACGTGGATTTTGTATGGAACCAACTATGATCAGTGCTAACGGGCTACCAAACAAACCTTTTACAAAAGTAATTTTCATAAGCACATATAGGATCGACTAGTAGTTCGAAGCAATTTGATTTTAACCAGTAGAATAACAGGAGTATAGATAATAGATTCTAACCGCTTCAGTAATACATTGAGTATGGCCTTGTACGCTTTCCTGCCCAAAGGTTTGTCCACAATCGATGCAAGACAGCTACAGGAAATTATAGAAACGAATAAGACGAAAACGAAGAAAAGAATATTAAAAACAAAACAATAGGACGAAATCAAAATGCGCCTTAAATCATCTCCAAGGTAGAATTCTATGAATCAAACTTCCAACTTATACATTGTTGAAGGGGAAAACAGGAGAAAACGCATTTTCCCTTCAGAATCACTTGTGGAAAAATGCATATTCTCCGAGGAAAGAGAGAATCGAAACCTTGGTAGCGGAACACGTTCTGAAGTGATTCGGCAACTTGGGTTTCTTGAGGTTGTCTCCGCAGTCTTCGCACTGA

mRNA sequence

ATGAATGGCCAAGAAAAAGATGCGTGTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGTATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTTCTTCGCACTGA

Coding sequence (CDS)

ATGAATGGCCAAGAAAAAGATGCGTGTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGTATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTTCTTCGCACTGA

Protein sequence

MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIASSH
Homology
[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 29  LYDKPLPCFGCGIGWFSFLLGFLF-PIMWYY-ATILYFWNVRRDPRERAGLAASAIAS 85
           + +  LPC G G+GWF F++GFLF  I WY  A I+   +V  D RE+AG  A +IAS
Sbjct: 85  MIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV--DHREKAGYVACSIAS 140

[Close]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match: XP_023538492.1 (uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493.1 uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179 bits (453), Expect = 5.45e-56
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT
Sbjct: 33  FKGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWNVRRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNVRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match: KAG7021350.1 (hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173 bits (439), Expect = 7.42e-54
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT
Sbjct: 33  FKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWNVRRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNVRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match: KAG6586492.1 (hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173 bits (439), Expect = 7.42e-54
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT
Sbjct: 33  FKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWNVRRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNVRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match: XP_022937742.1 (uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 uncharacterized protein LOC111444050 [Cucurbita moschata])

HSP 1 Score: 173 bits (438), Expect = 1.05e-53
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYAT
Sbjct: 33  FKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWNVRRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNVRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match: XP_022965444.1 (uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharacterized protein LOC111465349 [Cucurbita maxima])

HSP 1 Score: 172 bits (435), Expect = 3.02e-53
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT
Sbjct: 33  FEGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWN RRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNTRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match: A0A6J1FC32 (uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC111444050 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 5.11e-54
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYAT
Sbjct: 33  FKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWNVRRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNVRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match: A0A6J1HNQ0 (uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 1.46e-53
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT
Sbjct: 33  FEGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 92

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWN RRDPRERAGLAASAIA+
Sbjct: 93  ILYFWNTRRDPRERAGLAASAIAA 116

[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match: A0A6J1KAT7 (uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.67e-48
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQ KDA DH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYAT
Sbjct: 35  FKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYAT 94

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWN RRDPRERAGLAAS+IA+
Sbjct: 95  ILYFWNSRRDPRERAGLAASSIAA 118

[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match: A0A6J1G4J6 (uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC111450686 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.67e-48
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQ KDA DH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYAT
Sbjct: 35  FKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYAT 94

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           ILYFWN RRDPRERAGLAAS+IA+
Sbjct: 95  ILYFWNSRRDPRERAGLAASSIAA 118

[Close]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match: A0A6J1DPH7 (uncharacterized protein LOC111021894 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021894 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 3.21e-48
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1   MNGQEKDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYAT 60
             GQ KDA DH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGF FP++WYYAT
Sbjct: 56  FRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYAT 115

Query: 61  ILYFWNVRRDPRERAGLAASAIAS 84
           +LYFWNVRRDPRERAGLAASAIA+
Sbjct: 116 VLYFWNVRRDPRERAGLAASAIAA 139

[Close]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match: AT5G57060.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-29
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 6   KDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 65
           KDA    K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF 
Sbjct: 39  KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 98

Query: 66  N-VRRDPRERAGLAASAIAS 85
           N  R+DPRERAGLAASAI +
Sbjct: 99  NYYRKDPRERAGLAASAITA 118

[Close]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match: AT5G57060.2 (BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-29
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 6  KDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 65
          KDA    K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF 
Sbjct: 12 KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 71

Query: 66 N-VRRDPRERAGLAASAIAS 85
          N  R+DPRERAGLAASAI +
Sbjct: 72 NYYRKDPRERAGLAASAITA 91

[Close]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match: AT4G26060.1 (Ribosomal protein L18ae family )

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-29
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 6   KDACDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 65
           KDA    K +YTL+KDV++++ G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF 
Sbjct: 38  KDAMVCGKGRYTLVKDVDEVENGVYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFG 97

Query: 66  N-VRRDPRERAGLAASAIAS 85
           N  R+DPRERAGLAASAI +
Sbjct: 98  NYYRKDPRERAGLAASAITA 117

[Close]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match: AT1G54217.2 (Ribosomal protein L18ae family )

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-21
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 7  DACDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 66
          D  +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  
Sbjct: 5  DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 67 N-VRRDPRERAGLAASAIAS 85
          +   RDPRER+GLAASAIA+
Sbjct: 65 SYYHRDPRERSGLAASAIAA 84

[Close]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match: AT1G54217.1 (Ribosomal protein L18ae family )

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-21
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 10 DHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-V 69
          +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +  
Sbjct: 7  EQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLISYY 66

Query: 70 RRDPRERAGLAASAIAS 85
           RDPRER+GLAASAIA+
Sbjct: 67 HRDPRERSGLAASAIAA 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g10820 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9S12.8e-0448.2860S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2... [more]
BLAST of Cp4.1LG07g10820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023538492.15.45e-5696.43uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493.... [more]
KAG7021350.17.42e-5494.05hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6586492.17.42e-5494.05hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022937742.11.05e-5392.86uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 unchar... [more]
XP_022965444.13.02e-5392.86uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharac... [more]
BLAST of Cp4.1LG07g10820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FC325.11e-5492.86uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC1114440... [more]
A0A6J1HNQ01.46e-5392.86uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349... [more]
A0A6J1KAT71.67e-4883.33uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795... [more]
A0A6J1G4J61.67e-4883.33uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC1114506... [more]
A0A6J1DPH73.21e-4882.14uncharacterized protein LOC111021894 isoform X3 OS=Momordica charantia OX=3673 G... [more]
BLAST of Cp4.1LG07g10820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57060.11.5e-2971.25FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-... [more]
AT5G57060.21.5e-2971.25BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR... [more]
AT4G26060.13.4e-2971.25Ribosomal protein L18ae family [more]
AT1G54217.22.0e-2161.25Ribosomal protein L18ae family [more]
AT1G54217.13.4e-2162.34Ribosomal protein L18ae family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46666:SF260S RIBOSOMAL L18A-LIKE PROTEINcoord: 4..84
NoneNo IPR availablePANTHERPTHR4666660S RIBOSOMAL L18A-LIKE PROTEINcoord: 4..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g10820.1Cp4.1LG07g10820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane