Cp4.1LG07g10600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g10600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-box protein 1a-like
Location	Cp4.1LG07: 9528184 .. 9531725 (+)
RNA-Seq Expression	Cp4.1LG07g10600
Synteny	Cp4.1LG07g10600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAATGATGTAATTATAATATTGGTGAAGTGACACAATACACTATAAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAAAATTCAAGACGCAGCTACAGCTACGGGAGATCGGTCCGCCCGTGTCGAGGAGACGGATTAAGAAGCATCTTTCCTGCAAGTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAGCCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGGTAATTACGGAACCCTAATCTTTAGCCCTTCACACGGCGTTTGCCTTCTTACATCGGAATCCTCCTCTCTAATTTTTGTGTTATTCATTTCTTAATTCAGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGTAAGTTTATCATCATTTGATCAAGTTCTAAGATATCTGGAATGATCTTCCTCTTAATTTTCTATATTATTTGTATTTTCTTTAGCCATTCACCATTGTTTGTTATATGTAGGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTGTTTTTTTTTTTTTTTTTTAAAAACATTTCCTCTCCCTATCCCCAATCCATTCACGCAGACACAATGTGCTATTATTTTCTACCTCGCTCCTTACGGATACTGAGGTGGATGATTGGGCCTCTATGCTGAATATTTAAAGCCATGTCATATTTTCTAATTAGGAGGATGTCGAAGTGCGTTCCCTTCATATCAATGGTTGCTTTTCTGTCAATTCCTCATACCTTTAGCTTGTTTGTTAACACAGCCATACTGACCTAATCCGTAGTAAGCTAACCTGGGAGGCCAAAATTCTGGAAAAGTGAATGTCTTCCTATGGATTCTGATACAAGGGAAACTGAGTACGTGTGAGAAGCTTCAATGAAGCGTTCCGAATGGCTGGTGATGTATCCTGTGCAGGAAAGACAAGAGAGCCATTTTCATGTTTTTGTCCACTGCCCATTTTCTGCCGCTATTTGTTGAGCTAAGAATTGTTATGTATTTGGTATGAGTTGATGCTCCCGTAAGACCTCTGAGAATTACTGCCATCCAACTGTTAGGGCATAATCTAAATGGTCAAATTATAATCAGAGACTTTTTAAGAGGGTTGATTCTAGCTCGGAAAGCTTTTGGGATCTCAGGAAACTCTATTAAGAACTGAACTTGTTATTTAACTTAAAAAAGATTGCCTTTTGGATTGATTGATTATTACTCTATCCAACTTACAGTATGAAACATTATTTTGCAATTGCCCTTGATGTGGAATTATAGCAGGAGCCAACGACTGATGATACCTGGTGTTGAATTTTTATATATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCATTGGGTATGCATTTCACATTCTTGCCCAGCCTTTCAACCACAATTTTTTTCTAAAAAAAATGAATTTTGGTAATTGAAGAAAGCTTTGCCATTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGGTCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCGAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTCGATTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATGCTTCTGAAGTGATCTTACTTTAGAATGATTGTTGGCTGTTCTGAATGAAAAATACCAGTAGGCTGTAACGATGAGAAAATATAACATCATGGATTTGGTTGATATTCAGAACAGGTTAAAATTGTTATTTTGTTTTTCTTCTGAATATATTGCATGATGACTATGTTCTTCTTCTGAATTGTTAACTGGCACTTTTGTGTTGCTATCGAACTGTGCTGAGCTCTCTCAGTTTGTGCAGGCAAGGAGTTTGGGATGCCCATTCTTCTCACTTTGTTGCAGCCGGACGCTCCAGTTTTTGCTGATTGCCCCGCACCTCACACAGTTAACAGTTGCTAAACTCCCAACTGGAAGAATCATTTTGACTCGGCCATCAACTTCCTCAGCAAACACTGTACCTTATTTTACATTCTTGTTGCTGCTCGAAGGTGGTTCCCCGAGAAATTTGGTTAAACGAGTCTGCCAACTGAAGAAGAAAGCTAAAAACTAAGGGACTGAGCAGTGGTGTCGGTCTCTGGCTAGCAACACAAGTGGCATGGATTACAGCAGCAGTTTCCAGTACAGCCACAGCAGCATTTGCATTCACAGCATGGGCATTCAGGGCATGAAGGTAATGAAAAATGGCAACATTGGCTGCATGAAATGATTGGGCAAGAGCATGAGCATCGGGGTAGTGTTGGACAAGTACAACACTTCCACTTTGGTAAGTTACAGCAGCCGCATGATAGGCATTTACATGGATTATTACAGCTCCAGCAGGGTGGGTTTTCGAGATGGATCGAGCATCCAGCATAGCAGCAACAGCAAATCCACGACAACTTACAGCAGGGGAACCCACTGCATCAAGTGAGAATTAGCCTGATTATTCTTACACCACATCATCATGGAAGAAAAAGTAAGGTGAGAGTTACATACCAGAGTCATGTCCAAAATTGACATCTGCGGCTATGCTTCTTATATCTGATTCAAAGAAGAAACATATAGCATGAATAGACTGCAAAGAATTTTAGAAAATTAATGATGGGAAACCCCTTACGTTGTTATCAAGGGATCTGATTTGGCGACCACATAGTCAGCTACCCTGCAAAGTGTTCTTGTGCTAGATGAGCAGAAGATCTGGGAAGTAGAAGTTCAAAGTCTTTGGCAAATGAACTGGTGTACGTACTCTTTGCAGCATTGAGATGCAGGTTGAAGACCATCGGTAGACTTCAAGTCTTCCTGCCCCAGAGACATCGTGGAAGAAAAGCTTGTTATATTTTCATAATGAACCGGAGATAAGAGAAAGCAATGCAGGAATGAACCCAAATGGTTAGATTGAACATCAATGCCAATGGGATTTGTGTTGTGAGCAAAACTCAAATCTCACTGTTACCCCGTTAGGCTGGGGTGGGGTGCTTGTGCTTGGTGATGGAGAAAATTTGTAACCTTGAAGTTAATCTAAGACGAACCTTAGCTTGTTATTACGTCAGAAAGGGATGTACGGAATCTAAAATGTGATTTGGTTTCAATTGCAGTTTCTTGAGGGTTACGAA

mRNA sequence

CATAATGATGTAATTATAATATTGGTGAAGTGACACAATACACTATAAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAAAATTCAAGACGCAGCTACAGCTACGGGAGATCGGTCCGCCCGTGTCGAGGAGACGGATTAAGAAGCATCTTTCCTGCAAGTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAGCCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCATTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGGTCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCGAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTCGATTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATGCTTCTGAAGTGATCTTACTTTAGAATGATTGTTGGCTGTTCTGAATGAAAAATACCAGTAGGCTGTAACGATGAGAAAATATAACATCATGGATTTGGTTGATATTCAGAACAGGTTAAAATTGTTATTTTGTTTTTCTTCTGAATATATTGCATGATGACTATGTTCTTCTTCTGAATTGTTAACTGGCACTTTTGTGTTGCTATCGAACTGTGCTGAGCTCTCTCAGTTTGTGCAGGCAAGGAGTTTGGGATGCCCATTCTTCTCACTTTGTTGCAGCCGGACGCTCCAGTTTTTGCTGATTGCCCCGCACCTCACACAGTTAACAGTTGCTAAACTCCCAACTGGAAGAATCATTTTGACTCGGCCATCAACTTCCTCAGCAAACACTGTACCTTATTTTACATTCTTGTTGCTGCTCGAAGGTGGTTCCCCGAGAAATTTGGTTAAACGAGTCTGCCAACTGAAGAAGAAAGCTAAAAACTAAGGGACTGAGCAGTGGTGTCGGTCTCTGGCTAGCAACACAAGTGGCATGGATTACAGCAGCAGTTTCCAGTACAGCCACAGCAGCATTTGCATTCACAGCATGGGCATTCAGGGCATGAAGGTAATGAAAAATGGCAACATTGGCTGCATGAAATGATTGGGCAAGAGCATGAGCATCGGGGTAGTGTTGGACAAGTACAACACTTCCACTTTGGTAAGTTACAGCAGCCGCATGATAGGCATTTACATGGATTATTACAGCTCCAGCAGGGTGGGTTTTCGAGATGGATCGAGCATCCAGCATAGCAGCAACAGCAAATCCACGACAACTTACAGCAGGGGAACCCACTGCATCAAGTGAGAATTAGCCTGATTATTCTTACACCACATCATCATGGAAGAAAAAGTAAGGTGAGAGTTACATACCAGAGTCATGTCCAAAATTGACATCTGCGGCTATGCTTCTTATATCTGATTCAAAGAAGAAACATATAGCATGAATAGACTGCAAAGAATTTTAGAAAATTAATGATGGGAAACCCCTTACGTTGTTATCAAGGGATCTGATTTGGCGACCACATAGTCAGCTACCCTGCAAAGTGTTCTTGTGCTAGATGAGCAGAAGATCTGGGAAGTAGAAGTTCAAAGTCTTTGGCAAATGAACTGGTGTACGTACTCTTTGCAGCATTGAGATGCAGGTTGAAGACCATCGGTAGACTTCAAGTCTTCCTGCCCCAGAGACATCGTGGAAGAAAAGCTTGTTATATTTTCATAATGAACCGGAGATAAGAGAAAGCAATGCAGGAATGAACCCAAATGGTTAGATTGAACATCAATGCCAATGGGATTTGTGTTGTGAGCAAAACTCAAATCTCACTGTTACCCCGTTAGGCTGGGGTGGGGTGCTTGTGCTTGGTGATGGAGAAAATTTGTAACCTTGAAGTTAATCTAAGACGAACCTTAGCTTGTTATTACGTCAGAAAGGGATGTACGGAATCTAAAATGTGATTTGGTTTCAATTGCAGTTTCTTGAGGGTTACGAA

Coding sequence (CDS)

ATGGTAATAACAAATTTCATTGAAAATAAAAAAAATTCAAGACGCAGCTACAGCTACGGGAGATCGGTCCGCCCGTGTCGAGGAGACGGATTAAGAAGCATCTTTCCTGCAAGTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAGCCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCATTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAG

Protein sequence

MVITNFIENKKNSRRSYSYGRSVRPCRGDGLRSIFPASFLFVPTMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Homology

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-60
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 103
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 104 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-52
Identity = 96/116 (82.76%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 103
           +++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   SLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 104 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           CIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 63  CIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 51  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 110
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 111 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 51  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 110
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 111 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.7e-52
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 63  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 122
           PSS+ K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 123 AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108

[Close]

BLAST of Cp4.1LG07g10600 vs. NCBI nr
Match: KAG6586496.1 (RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (745), Expect = 2.06e-98
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 16  SYSYGRSVRPCRGDGLRSIFPASFLFVPTMDSDVTMVPVGEASSSAGPSSTKKPKRFEIK 75
           SYSY +SVRPC+GDGLRSIF A+FLFVPTMDSDVTMVPVGEASSSAGPSSTKKPKRFEIK
Sbjct: 10  SYSYRKSVRPCQGDGLRSIFLATFLFVPTMDSDVTMVPVGEASSSAGPSSTKKPKRFEIK 69

Query: 76  KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 135
           KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS
Sbjct: 70  KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 129

Query: 136 RWLKTRQVCPLDNSEWEFQK 155
           RWLKTRQVCPLDNSEWEFQK
Sbjct: 130 RWLKTRQVCPLDNSEWEFQK 149

[Close]

BLAST of Cp4.1LG07g10600 vs. NCBI nr
Match: XP_022937741.1 (RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1a-like isoform X1 [Cucurbita maxima] >XP_023537816.1 RING-box protein 1a-like [Cucurbita pepo subsp. pepo] >KAG7021354.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251 bits (640), Expect = 1.76e-83
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 45  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 104
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 105 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Cp4.1LG07g10600 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 249 bits (636), Expect = 7.92e-83
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. NCBI nr
Match: XP_007218617.1 (RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >XP_008232852.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >XP_034202694.1 RING-box protein 1a-like [Prunus dulcis] >XP_034202695.1 RING-box protein 1a-like [Prunus dulcis] >PQP92865.1 RING-box protein 1a [Prunus yedoensis var. nudiflora] >CAB4269841.1 unnamed protein product [Prunus armeniaca] >ONI22810.1 hypothetical protein PRUPE_2G152700 [Prunus persica] >CAB4300233.1 unnamed protein product [Prunus armeniaca] >VVA19386.1 PREDICTED: RING-box [Prunus dulcis])

HSP 1 Score: 248 bits (633), Expect = 2.27e-82
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. NCBI nr
Match: XP_004306863.1 (PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 247 bits (631), Expect = 4.58e-82
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV M+PVGE SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMIPVGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL
Match: A0A6J1HSM1 (RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 PE=4 SV=1)

HSP 1 Score: 251 bits (640), Expect = 8.53e-84
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 45  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 104
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 105 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL
Match: A0A6J1FB79 (RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1)

HSP 1 Score: 251 bits (640), Expect = 8.53e-84
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 45  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 104
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 105 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL
Match: A0A6P4A6G4 (RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 3.83e-83
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL
Match: A0A6J1DPM4 (RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 3.83e-83
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL
Match: M5X2V0 (RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.10e-82
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 103
           T+DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 104 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 158
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Cp4.1LG07g10600 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 234.2 bits (596), Expect = 7.3e-62
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 103
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 104 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Cp4.1LG07g10600 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-58
Identity = 107/140 (76.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 103
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 104 CIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISRWL 159
           CIECQANQASATSEECTVAW                        GVCNHAFHFHCISRWL
Sbjct: 63  CIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWL 122

[Close]

BLAST of Cp4.1LG07g10600 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-57
Identity = 106/134 (79.10%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWD---------------- 103
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAW                 
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLSMF 62

Query: 104 --IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 159
             IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 63  RYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 122

[Close]

BLAST of Cp4.1LG07g10600 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-53
Identity = 96/116 (82.76%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 44  TMDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 103
           +++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   SLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 104 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 159
           CIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 63  CIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Cp4.1LG07g10600 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 68  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 127
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 128 AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 156
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g10600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	1.0e-60	92.24	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	2.3e-52	82.76	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	5.1e-52	83.33	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	5.1e-52	83.33	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q9W5E1	8.7e-52	91.84	RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1	[more]

BLAST of Cp4.1LG07g10600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586496.1	2.06e-98	96.43	RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022937741.1	1.76e-83	100.00	RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1...	[more]
XP_015889019.1	7.92e-83	98.26	RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [...	[more]
XP_007218617.1	2.27e-82	97.39	RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein...	[more]
XP_004306863.1	4.58e-82	96.52	PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca]	[more]

BLAST of Cp4.1LG07g10600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSM1	8.53e-84	100.00	RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 ...	[more]
A0A6J1FB79	8.53e-84	100.00	RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1	[more]
A0A6P4A6G4	3.83e-83	98.26	RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1	[more]
A0A6J1DPM4	3.83e-83	98.26	RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=...	[more]
M5X2V0	1.10e-82	97.39	RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 ...	[more]

BLAST of Cp4.1LG07g10600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	7.3e-62	92.24	RING-box 1	[more]
AT5G20570.2	8.3e-58	76.43	RING-box 1	[more]
AT5G20570.3	1.1e-57	79.10	RING-box 1	[more]
AT3G42830.1	1.6e-53	82.76	RING/U-box superfamily protein	[more]
AT3G05870.1	6.0e-16	39.56	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 90..148 e-value: 3.8E-25 score: 87.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 59..158 e-value: 3.6E-35 score: 122.1
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 44..158
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 44..158
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 90..151 e-value: 1.61202E-46 score: 144.049
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 70..155
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..148 score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g10600.1	Cp4.1LG07g10600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding