Cp4.1LG07g10360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g10360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Cp4.1LG07: 9303764 .. 9304129 (-)
RNA-Seq Expression	Cp4.1LG07g10360
Synteny	Cp4.1LG07g10360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGTCTTGCCTGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCTGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGCCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCTGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

mRNA sequence

ATGGCTGCTGTCTTGCCTGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCTGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGCCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCTGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

Coding sequence (CDS)

ATGGCTGCTGTCTTGCCTGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCTGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGCCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCTGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

Protein sequence

MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQV

Homology

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 44  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWL 103
           T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGDCCPLCRCHVSSDN 112
            + + CP+CR  + +D+
Sbjct: 248 ELHNSCPVCRFELPTDD 264

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-09
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 47  PSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCH 106
           P V ++D  T    + CAVC E F A   G+++PC H++H  CI  WLS+ + CP+CR  
Sbjct: 200 PRVEISDCHTKAEAN-CAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFE 259

Query: 107 VSSD 111
           + SD
Sbjct: 260 LPSD 262

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-09
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 51  VADLPTVVTDDV--CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVS 110
           V  LPTV  ++V  C+VC+++       KQ+PC H +H +CI  WL +   CP+CR  + 
Sbjct: 185 VEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELP 244

Query: 111 SDNKSETAKPVQV 122
           S+   +  +P  +
Sbjct: 245 SEETKDLNEPSNI 257

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 63  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDN 112
           CAVCM++F      KQ+PC H+YH+ C+  WL + + CP+CR  + +D+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDD 272

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 62  VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDN 112
           VCAVC +     E GK++PCGH YH  CI  WL   + CP+CR  + +D+
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDD 305

[Close]

BLAST of Cp4.1LG07g10360 vs. NCBI nr
Match: XP_023537996.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251 bits (641), Expect = 3.46e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQ 120
           DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQ
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQ 120

[Close]

BLAST of Cp4.1LG07g10360 vs. NCBI nr
Match: KAG7021303.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (629), Expect = 2.42e-82
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG-DCCPLCRCHVSSDNKSETAKPV 120
           DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG DCCPLCRCHVSSDNKSETAKPV
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. NCBI nr
Match: KAG6586449.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (625), Expect = 9.87e-82
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVAD PTVVTD
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADFPTVVTD 60

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG-DCCPLCRCHVSSDNKSETAKPV 120
           DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG DCCPLCRCHVSSDNKSETAKPV
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. NCBI nr
Match: XP_022938297.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 244 bits (624), Expect = 1.40e-81
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAAVLPEATRSAFAA YIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD
Sbjct: 1   MAAVLPEATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG-DCCPLCRCHVSSDNKSETAKPV 120
           DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG DCCPLCRCHVSSDNKSETAKPV
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. NCBI nr
Match: XP_022965415.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima])

HSP 1 Score: 240 bits (612), Expect = 9.49e-80
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVT 60
           MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ IITEPPSVVV+DLPTVVT
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60

Query: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPV 120
           DDVCAVCMEEFRADEGGKQIPCGHVYHQ+CISSWLSVGDCCPLCRCHVSSDNK ET KPV
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL
Match: A0A6J1FDN7 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111444430 PE=4 SV=1)

HSP 1 Score: 244 bits (624), Expect = 6.79e-82
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAAVLPEATRSAFAA YIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD
Sbjct: 1   MAAVLPEATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG-DCCPLCRCHVSSDNKSETAKPV 120
           DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVG DCCPLCRCHVSSDNKSETAKPV
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL
Match: A0A6J1HNM2 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465331 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 4.60e-80
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVT 60
           MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ IITEPPSVVV+DLPTVVT
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60

Query: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPV 120
           DDVCAVCMEEFRADEGGKQIPCGHVYHQ+CISSWLSVGDCCPLCRCHVSSDNK ET KPV
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPV 120

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL
Match: A0A5A7V793 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00900 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 4.35e-54
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCM 67
           AT +  AA YIMD+ESMFDLDTVL+GADD+Y       PP VVVADLPTV TDD CAVCM
Sbjct: 2   ATSANHAARYIMDIESMFDLDTVLSGADDFYYFHTAVAPPPVVVADLPTVATDDACAVCM 61

Query: 68  EEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQV 121
           E+F  DEGGKQIPCGHVYHQ+CISSWLSVGD CPLCR H++  +K+ET+K VQV
Sbjct: 62  EDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQV 115

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL
Match: A0A0A0LEZ1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 9.06e-54
Identity = 80/115 (69.57%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT-DDVCAVC 67
           AT + +AASYIMD+ESMFDLDTVLTGADD+Y    +  PP V+VA+LPTV   DDVCAVC
Sbjct: 2   ATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVC 61

Query: 68  MEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQV 121
           ME+F  DEGGKQIPCGHVYHQ+C+SSWLS+ D CPLCRCH++  +K+ET+K VQV
Sbjct: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 7.24e-35
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 3   AVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPS-VVVADLPTVVTDD 62
           AVL E TR+  AA+Y M+L  +FDLD VL+G DD+    +     S  +VADLPTVV D 
Sbjct: 5   AVLAETTRN-LAAAYPMEL--LFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD- 64

Query: 63  VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKP 118
           VCAVC E+FR+DEGGKQIPCGHVYH+ CISSWL+V DCCPLCR  V       T+ P
Sbjct: 65  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPPPPSTSIP 117

[Close]

BLAST of Cp4.1LG07g10360 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 25  FDLDTVLTGADDYYNDQI----ITEPP---SVVVADLPTVVTDD------VCAVCMEEFR 84
           F+ D ++   D+ + D +    I  PP   S + A    ++TD+      VCA+C EEF 
Sbjct: 87  FNHDDLVYNTDEEFADVMPSVQIGPPPASQSAIEAVRTVIITDEDLVKEKVCAICKEEFE 146

Query: 85  ADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVS 109
             E GK++ C H+YH +CI SWL++ + CP+CR  V+
Sbjct: 147 VGEEGKELKCLHLYHSSCIVSWLNIHNTCPICRFEVN 183

[Close]

BLAST of Cp4.1LG07g10360 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-11
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 44  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWL 103
           T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGDCCPLCRCHVSSDN 112
            + + CP+CR  + +D+
Sbjct: 248 ELHNSCPVCRFELPTDD 264

[Close]

BLAST of Cp4.1LG07g10360 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 62  VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDN 112
           VCA+C EE  A+E   ++PC H YH+ CIS+WLS  + CPLCR +V   N
Sbjct: 96  VCAICREELAANERLSELPCRHYYHKECISNWLSNRNTCPLCRHNVELPN 145

[Close]

BLAST of Cp4.1LG07g10360 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSV--VVADLPTVVT--------DDVCAVCMEEF 80
           L  MFD +T + G            PP+   V+ DLP V          ++VCAVC +E 
Sbjct: 294 LGQMFDDETGIRG-----------NPPAAKSVIQDLPVVELAVEELDKGNNVCAVCKDEM 353

Query: 81  RADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDN 112
             +E  +++PC H YH  CI  WL + + CP+CR  + +D+
Sbjct: 354 LVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDD 383

[Close]

BLAST of Cp4.1LG07g10360 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 47  PSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCH 106
           P V ++D  T    + CAVC E F A   G+++PC H++H  CI  WLS+ + CP+CR  
Sbjct: 200 PRVEISDCHTKAEAN-CAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFE 259

Query: 107 VSSD 111
           + SD
Sbjct: 260 LPSD 262

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g10360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	1.1e-09	44.16	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SNB6	7.0e-09	42.19	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q6AVN2	7.0e-09	34.25	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
P0CH30	1.6e-08	42.86	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9SPL2	2.0e-08	46.00	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]

BLAST of Cp4.1LG07g10360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537996.1	3.46e-84	100.00	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7021303.1	2.42e-82	99.18	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
KAG6586449.1	9.87e-82	98.36	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022938297.1	1.40e-81	98.36	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_022965415.1	9.49e-80	95.90	E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG07g10360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDN7	6.79e-82	98.36	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HNM2	4.60e-80	95.90	E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465...	[more]
A0A5A7V793	4.35e-54	71.93	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0LEZ1	9.06e-54	69.57	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 P...	[more]
A0A6J1DM93	7.24e-35	58.97	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Cp4.1LG07g10360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	5.3e-12	36.08	RING/U-box superfamily protein	[more]
AT3G19950.1	7.6e-11	44.16	RING/U-box superfamily protein	[more]
AT3G30460.1	1.3e-10	52.00	RING/U-box superfamily protein	[more]
AT3G02340.1	2.9e-10	33.66	RING/U-box superfamily protein	[more]
AT3G46620.1	5.0e-10	42.19	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 63..103 e-value: 2.2E-7 score: 40.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 62..104 e-value: 5.9E-11 score: 42.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 63..104 score: 12.710573
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 55..120 e-value: 1.3E-17 score: 64.7
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..108
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..108
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 57..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g10360.1	Cp4.1LG07g10360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding