Cp4.1LG07g10350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g10350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 9339690 .. 9340607 (+)
RNA-Seq ExpressionCp4.1LG07g10350
SyntenyCp4.1LG07g10350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAACCATCAGACGCCATTGTGCCGGTAATTCTTGCATCTCCTTTACGGCTACCGCCTTCGTTTAAGTGGACAATATCATCTCTGTTCGTTTCATTTTGCTGTGAGTTCTTAATGTTGAAGCACCACGGATGCGAGGGTTTAAAGTTTTGATGGTTTGAGAGATTACGACATAGATATTTGTTACTGCTGATGGTTTGATAGACAATTTCGGTAACTGATTTTGATTTTAAGGTGTTTCAATTTTTTAGGTTTCCAAGCTTTGTTTCTGTTAGATTGAGAAATGGAATTTGCGATTGTTTTGGAGGATTGAATGAAATTATCGATTAAGAGATTTTAATTCAAGGTGATTTTGATGTTTTATTTTTGGATGATTATCGAAACTTCTGGATTGGATTTCATCTTGCTCATTGATCTTTTCGGCGTTGAAATAAAATACAAAAGAACAGCGGCATTTTGTATCAGGATTTAATGATTCTGAGATGAGTTCATTTGTAAAACGCTCCTATTGCAGAACTTTATCTTCAGCTGTTGTTTAGAGAGGAGTTTCAGCATCAACCAAAGGCTCAATGGTGAGATTTTTCTCTCTTTGGTTTTGTTTTCGTAGTAAACTCCCATGGTTATTTATCAAACTTCAGTTTGCTTATGAGGATTTTGAATTTGCACAGTTTCCTGCTGCTAGTGGGATTGAATTTAGGATCCAACAGGCCAAGCAAGATGGTTGCACAGGTAATTATAAGATCCTTTATTCCTCATTTTGAAATTTTCTTTTGCCTGTTACTCTTTCTCCTGCTGAATTAGTTGAATAGTAGTTTCGAATCTGGTACTGCTTCTACCAGATTCTTATAGCT

mRNA sequence

GAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAACCATCAGACGCCATTGTGCCGTAAACTCCCATGGTTATTTATCAAACTTCAGTTTGCTTATGAGGATTTTGAATTTGCACAGTTTCCTGCTGCTAGTGGGATTGAATTTAGGATCCAACAGGCCAAGCAAGATGGTTGCACAGATTCTTATAGCT

Coding sequence (CDS)

GAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAACCATCAGACGCCATTGTGCCGTAAACTCCCATGGTTATTTATCAAACTTCAGTTTGCTTATGAGGATTTTGAATTTGCACAGTTTCCTGCTGCTAGTGGGATTGAATTTAGGATCCAACAGGCCAAGCAAGATGGTTGCACAGATTCTTATAGCT

Protein sequence

ERKVSKPRNDREIMAPSSQIKRRKTIRRHCAVNSHGYLSNFSLLMRILNLHSFLLLVGLNLGSNRPSKMVAQILIA
Homology
[Close]
BLAST of Cp4.1LG07g10350 vs. NCBI nr
Match: KAG7021312.1 (Hexokinase-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 5.85e-12
Identity = 51/90 (56.67%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRKT-------------IRRHCAVNSHGYLSNFSLLMRI 60
          ERKVSKPRNDREIMAPSSQIKRRKT             +R    +    YL    LL R 
Sbjct: 7  ERKVSKPRNDREIMAPSSQIKRRKTHHTPLRRFPSFVSVRLRNGICDELYLQ---LLFRD 66

Query: 61 LNLHS-----FLLLVGLNLGSNRPSKMVAQ 72
             H      FLLLVGLNLGSNRP+KMVAQ
Sbjct: 67 EFQHQPKAQRFLLLVGLNLGSNRPNKMVAQ 93

[Close]
BLAST of Cp4.1LG07g10350 vs. NCBI nr
Match: KAG7030460.1 (hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 46.6 bits (109), Expect = 3.14e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRK 24
          ER+VSKPRNDREIMAPSSQIKRRK
Sbjct: 2  ERRVSKPRNDREIMAPSSQIKRRK 25

[Close]
BLAST of Cp4.1LG07g10350 vs. NCBI nr
Match: KAG6599484.1 (hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 46.6 bits (109), Expect = 3.26e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRK 24
          ER+VSKPRNDREIMAPSSQIKRRK
Sbjct: 4  ERRVSKPRNDREIMAPSSQIKRRK 27

[Close]
BLAST of Cp4.1LG07g10350 vs. NCBI nr
Match: TYK10748.1 (hexokinase-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 8.81e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRK 24
          ERKVS PRNDREIMAPSSQIKRRK
Sbjct: 2  ERKVSMPRNDREIMAPSSQIKRRK 25

[Close]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match: A0A5D3CHN8 (Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00610 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.27e-04
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRK 24
          ERKVS PRNDREIMAPSSQIKRRK
Sbjct: 2  ERKVSMPRNDREIMAPSSQIKRRK 25

[Close]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match: A0A6J1DKA0 (uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.48e-04
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRKT 25
          ERKVSKP NDREIMAPSSQ KRRKT
Sbjct: 2  ERKVSKPGNDREIMAPSSQSKRRKT 26

[Close]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match: A0A6J1G2N7 (Phosphotransferase OS=Cucurbita moschata OX=3662 GN=LOC111450243 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 7.39e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRK 24
          ER+VSKPRNDREIMAPSSQIKRRK
Sbjct: 2  ERRVSKPRNDREIMAPSSQIKRRK 25

[Close]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match: A0A6J1DMU3 (uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.48e-04
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1  ERKVSKPRNDREIMAPSSQIKRRKT 25
          ERKVSKP NDREIMAPSSQ KRRKT
Sbjct: 2  ERKVSKPGNDREIMAPSSQSKRRKT 26

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g10350 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g10350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021312.15.85e-1256.67Hexokinase-1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7030460.13.14e-0495.83hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6599484.13.26e-0495.83hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK10748.18.81e-0495.83hexokinase-1 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CHN84.27e-0495.83Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DKA05.48e-0492.00uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1G2N77.39e-0495.83Phosphotransferase OS=Cucurbita moschata OX=3662 GN=LOC111450243 PE=3 SV=1[more]
A0A6J1DMU38.48e-0492.00uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of Cp4.1LG07g10350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g10350.1Cp4.1LG07g10350.1mRNA