Cp4.1LG07g10170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g10170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
LocationCp4.1LG07: 9211219 .. 9214120 (-)
RNA-Seq ExpressionCp4.1LG07g10170
SyntenyCp4.1LG07g10170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAACGACGACGTTTGGGACTCCGATGTAAGACAAAGTAAAACCCTTCTAACTCTTCGAAATCCATTTCCATTACAGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTGAGATTCCTCTCTCTTATTCATTTCCTATCTCATTCGTCATACCGTCACAGAATCATTAGTCACGGAACGAAATTCTGTTCAATTTCTTACTGTGGAATAAATTTTTGCAATAGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTACGTTTTGCTTAAGTTTCTTCTAGCACTTGATTTTAGTGAATGCCGGTGTTTCTCTATAATATAGGAGGTTTTATACCTTTTAGGATCTGATCATAATTCGGGTCAAGTTCAATGCATGTCTTGTGGAATGCCAGTACGGTTGAAGAAATCTGCCTTTGCTACTTGAAGGAATACATCACCTTCAGTGGTGTATGAAGGAAACAACCCCAAGGATGCAACCAACTTTAGTTTTTGAACCGAAGTTGAACATAACTGACCATATATGAGATGGAGCCATAGTCTTTTGCAGAATTTTAGCATTAATCTGGTTTTTTGTAACAGCCCAAACCCACCACCAGTAGATATTATCTGCTTTGGCCCTTTACGCATCGCGTCACCCTTACGGTTTTAAAACGCGTCTACTAGGGAGAGATTTCTACACCATTATAAGGAATGTTTCGTCTCCTCTCCAACCGATGTGAGATCTTTCAATCCACTACCTTGGAGCCTAGCGTCCTCGCTAGCATACCGTCTGGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAACCCACCACTAGTAGATATTGTCCGCTTTGGCCCGTTACGTATTGCCATCAGCCTCACGGTTTTAAAACGTGTCTACTAAGTTGAGATTTCCACACCCTTATAAGAAATGCTTTGTTCTTCTCTCCAATCGACATGGGACCTTTCAACCTAACTGACCATATATGAGATGGAGCCATTGTCTTTTGCAGAATTTTAGCATTAATCTGGTTTTTCAACAACTTCACTGTGGTAGCTTATGTTTATCAGTTTATTTGTTGGCTCTTCTAATTTATCACCAAGCTTCAAAGATACCCAAGTGATGTAGTTTTCAACTAGTTGATGGTGGATAATTTTTCTGATCTTCAATTTATGTGCAACCATCAACAGCTTTTGTGATGCATATCTCAATTGTAGTGTCATTGCATCATTTTTATTCTATCTCACAGTGAAAACAAACCTACCTGAAGAAAGTAATCTACTTGATATGTTTTGTTCATTGTAAAATGTAATCAATACTAACTTCCAATGGCTAGAAGTTGGTAGCATATTGTTCCTTGCCCCTCTTGCGCCTGAACCCTCATAATGTATTCTTGTCTTGGGTGGGTAGGATGATAATGACCCCTTGTTCGTTCTCTTCTGGTTCACTGGGAAGTTTTTGGGATTTTTATTTGGTTCGTATGGACTTGAGTGGCATTTCCGAAAGCTGTGGGTTCTGTACTTCAGATGTTACGTTCAAATTTCAGAAACCAGATTAAATTGATTCTAGATTGCTTATCTTTGTAAGGCTTGGAACATGAAAATAATAGGAAGCTTCACGGAAATTGAGATAATCAAATTTTTGGTATCTTCTTGTCTCTTAAACTTTGGTTAGATGTCTTGTACTCTGTCTCCTCTCTTATATATTCATTACAGTATTCGTAATACTGTTCTTTTGAAAATACAACCTTTTCCCGGAAATAAACACTGATTGAAACTTTTGTGCTCGATAAATTTGAGGAGAGTGTGAATGTAGAGGGTAAGAAAATCATTTAGGGGCGTTTAAGGCATGAGTTGAGCATCTTTAAGCTTGGGTTTAGTAAGTCTAGGGGTTTAAATTAAAGGTTTGGGAAGCCTGGTTAAGGAAAATGGTGTTGGGATGCAGCTTTAGAAAGCATAGGTTTAGGAACACTGTCTCAGAGTATGTTATCGCTCAAACTCATTGATTTCTCCAATAAATTATGTCTTGGAAACTCCTCATCCTAAACATTGGTTAGGCTTAGGAAGCCAAATCCATGCCCCAAACGCCCCTTTACAGGTGTTACAAATGTCTTGGAAACTCCTCATCCTAAAATTATCTTTGTCCTTTGATCCGAATAAGTTGTTACCAATGTCTTCTGCATTAGTTCTATGGGAGAAAGTTGTGTATGCAAGTTTATACTCATCATTTGAAGTAGTTTCATGCGCGATAATTTATTGTAAGAGAACCATCTTTGACGTTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGTAGTTGTTCTCTATAGTTTTCTGTTTGTTGACAATTTTTGAGTTTCTTTTTACTTTTAGCTCGCTACAAGAATATAAATCCTCAATCATTGTCTCAGAATTTCTCTTTTCCTAGACGTTGAATGAGGGTTAAAGTTAGCTTTCAGCTCATAATGATAAATGCGCTTTATGATAACCATTTTGCTCTGAAACATTTATTTTCTTAGACAAGTTCTATTGAAGATTTAGGAATCGAACTGTGTAACAACACTTAAGGACTCGGAGCAGAATGTAGGTTATACATATGTAGGCTTAGAGCTTCTTCTTCTTCTTCTTATTTTTTGGATGAAATCTAAGGGTTTTTA

mRNA sequence

TGAAACGACGACGTTTGGGACTCCGATGTAAGACAAAGTAAAACCCTTCTAACTCTTCGAAATCCATTTCCATTACAGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGCTTAGGAAGCCAAATCCATGCCCCAAACGCCCCTTTACAGGTGTTACAAATGTCTTGGAAACTCCTCATCCTAAAATTATCTTTGTCCTTTGATCCGAATAAGTTGTTACCAATGTCTTCTGCATTAGTTCTATGGGAGAAAGTTGTGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGTAGTTGTTCTCTATAGTTTTCTGTTTGTTGACAATTTTTGAGTTTCTTTTTACTTTTAGCTCGCTACAAGAATATAAATCCTCAATCATTGTCTCAGAATTTCTCTTTTCCTAGACGTTGAATGAGGGTTAAAGTTAGCTTTCAGCTCATAATGATAAATGCGCTTTATGATAACCATTTTGCTCTGAAACATTTATTTTCTTAGACAAGTTCTATTGAAGATTTAGGAATCGAACTGTGTAACAACACTTAAGGACTCGGAGCAGAATGTAGGTTATACATATGTAGGCTTAGAGCTTCTTCTTCTTCTTCTTATTTTTTGGATGAAATCTAAGGGTTTTTA

Coding sequence (CDS)

ATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGCTTAGGAAGCCAAATCCATGCCCCAAACGCCCCTTTACAGGTGTTACAAATGTCTTGGAAACTCCTCATCCTAAAATTATCTTTGTCCTTTGATCCGAATAAGTTGTTACCAATGTCTTCTGCATTAGTTCTATGGGAGAAAGTTGTGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGTAG

Protein sequence

MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIASARLISSLAIESRGWGLVPQGLGSQIHAPNAPLQVLQMSWKLLILKLSLSFDPNKLLPMSSALVLWEKVVYFNAFMTVSVCR
Homology
[Close]
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match: XP_023538189.1 (uncharacterized protein LOC111799036 [Cucurbita pepo subsp. pepo] >XP_023538190.1 uncharacterized protein LOC111799036 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (434), Expect = 2.39e-52
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIASARLISSLAIESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match: XP_022966032.1 (uncharacterized protein LOC111465737 [Cucurbita maxima] >XP_022966033.1 uncharacterized protein LOC111465737 [Cucurbita maxima])

HSP 1 Score: 168 bits (425), Expect = 5.60e-51
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASL+AVSR+SSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIASARLISSL IESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIASARLISSLTIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match: KAG7021289.1 (hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (423), Expect = 1.13e-50
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKSTCQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSLAIESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match: KAG6586435.1 (hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (420), Expect = 3.23e-50
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKSTCQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAI++ARLISSLAIESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAISAARLISSLAIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match: XP_022938270.1 (uncharacterized protein LOC111444407 [Cucurbita moschata] >XP_022938271.1 uncharacterized protein LOC111444407 [Cucurbita moschata])

HSP 1 Score: 162 bits (411), Expect = 7.58e-49
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSLAIESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match: A0A6J1HLX3 (uncharacterized protein LOC111465737 OS=Cucurbita maxima OX=3661 GN=LOC111465737 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 2.71e-51
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASL+AVSR+SSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIASARLISSL IESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIASARLISSLTIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match: A0A6J1FCN7 (uncharacterized protein LOC111444407 OS=Cucurbita moschata OX=3662 GN=LOC111444407 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 3.67e-49
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSLAIESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.28e-42
Identity = 80/95 (84.21%), Postives = 87/95 (91.58%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASLKAVSRLSSRLHSLA KL K+  SS+PSP KS+CQS+ SA STSR+SCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLAPKLKKKFPSSEPSPLKSSCQSKPSAASTSRISCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSL IESRGWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESRGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.04e-41
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS CQS+ SA STSR+SCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSL+IES+GWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 5.99e-41
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60
          MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS+CQS+ SA S SR+SCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 95
          SQGSLMPLHSAIA+ARLISSL+IES+GWGLVPQG+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGI 95

[Close]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-17
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRS--SSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLE 60
          MAS   + RLSS++HSL  KL+K +   SS PSP KS+  S     +TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPS----SATSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 96
          LS   S++PLHSAIASARLISSL++ES+ WGLVPQG+
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQGI 93

[Close]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRS--SSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLE 60
          MAS   + RLSS++HSL  KL+K +   SS PSP KS+  S     +TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPS----SATSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIASARLISSLAIESRGWGLVPQG 95
          LS   S++PLHSAIASARLISSL++ES+ WGLVPQG
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-14
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 0 

Query: 1  MASLKAVSRLSSRLHSLASKLNKRSS--SSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLE 60
          MAS + + R SSRL SL   L+ +++  SS PSP KS      S+ ++ RL+ +SRLP+E
Sbjct: 1  MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKSASP---SSATSCRLNRSSRLPVE 60

Query: 61 LSSQGSLMPLHSAIASARLISSLAIESRGWGLVPQGL 96
          LS   S++PLHSAIAS+RL+SSL++ES+ WGLVPQGL
Sbjct: 61 LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQGL 91

[Close]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.0e-04
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 39  SRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIASARLISSLAIESRGWGLVPQGLGSQ 98
           S  + PS  RL+  SR+P+ELS+  SL+PLHS  ASA L S L++ ++ W  + +G  S 
Sbjct: 46  SSSTRPSLRRLT-FSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEGFAST 105

Query: 99  I 100
           +
Sbjct: 106 L 105

[Close]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-04
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 2   ASLKAVSR-LSSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 61
           ++L A SR L SR  ++  K      ++  SPF S  QS         +   SR+   L 
Sbjct: 7   SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQS---------IPRASRVLSALG 66

Query: 62  SQGSLMPLHSAIASARLISSLAIESRGWGLVPQGLGSQI 100
           S  +++PLHSA+ASARL SS+A +S  W L+ QGL + +
Sbjct: 67  SVETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g10170 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g10170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023538189.12.39e-5298.95uncharacterized protein LOC111799036 [Cucurbita pepo subsp. pepo] >XP_023538190.... [more]
XP_022966032.15.60e-5195.79uncharacterized protein LOC111465737 [Cucurbita maxima] >XP_022966033.1 uncharac... [more]
KAG7021289.11.13e-5096.84hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6586435.13.23e-5095.79hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022938270.17.58e-4995.79uncharacterized protein LOC111444407 [Cucurbita moschata] >XP_022938271.1 unchar... [more]
BLAST of Cp4.1LG07g10170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HLX32.71e-5195.79uncharacterized protein LOC111465737 OS=Cucurbita maxima OX=3661 GN=LOC111465737... [more]
A0A6J1FCN73.67e-4995.79uncharacterized protein LOC111444407 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1DYI41.28e-4284.21uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1G3991.04e-4184.21uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503... [more]
A0A6J1KDE25.99e-4183.16uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876... [more]
BLAST of Cp4.1LG07g10170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55205.17.0e-1756.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55205.21.2e-1657.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13674.13.3e-1453.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G70350.14.0e-0442.62unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac... [more]
AT4G39300.16.8e-0437.37unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..40
NoneNo IPR availablePANTHERPTHR33156:SF43BNAANNG28360D PROTEINcoord: 1..96
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g10170.1Cp4.1LG07g10170.1mRNA