Cp4.1LG07g09810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g09810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationCp4.1LG07: 8781830 .. 8782171 (+)
RNA-Seq ExpressionCp4.1LG07g09810
SyntenyCp4.1LG07g09810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

mRNA sequence

ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

Coding sequence (CDS)

ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

Protein sequence

MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGPVPPSGRNPCSFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSLRP
Homology
BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (523), Expect = 1.86e-66
Identity = 107/115 (93.04%), Postives = 108/115 (93.91%), Query Frame = 0

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGPVPPSGRNPCSFI 60
           MPFSVMKTPAAA   FVFILLCIFHVSAARVLTGERWRPVSDRMLRG VPPSGRNPCSFI
Sbjct: 1   MPFSVMKTPAAA---FVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGLGRGRCTLSEVEDEAGGGGGG--SSAFPGMNFDGFAAGAMVNGTQKQDPSLRP 113
           PGLGRGRCTLSEVEDEAGGGGGG  SSAFPGMNFDGF+A AMVNGTQKQDPSLRP
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSLRP 112

BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 2.20e-35
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGPVPPSGRNPC 60
           M FS+MKT      AF+FI L I  +SAARVL GERW P   V   MLRGPVP S RNPC
Sbjct: 1   MAFSLMKT-----VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  SFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 111
           SFIPG  RGRCTLSEV++      GGSSAFPG+N DGFAA ++VN TQKQD S+
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 1.43e-32
Identity = 70/111 (63.06%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGPVPPSGRNPCSFI 60
           M FS++KT      AF+FI L IF VS  R L G R   V   +LRGPVP S RNPCSFI
Sbjct: 1   MAFSLVKT-----VAFLFIFLSIFDVSVGRWLPGSR---VPIAVLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 111
           PG  RGRCTLSEV+D A    GGSSAFPG+N DGFAA +MVN TQKQD SL
Sbjct: 61  PGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 103

BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 1.56e-31
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 26  VSAARVLTGERWRP---VSDRMLRGPVPPSGRNPCSFIPGLGRGRCTLSEVEDEAGGGGG 85
           +SAARV+TGERW P   V   MLRG VP S RNPCSFIPG  RGRCTLSE +D A    G
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 86  GSSAFPGMNFDGFAAGAMVNGTQKQDPSLRP 113
           GSSA  G+N DGFAA +M N TQK+DPSLRP
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKKDPSLRP 91

BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: GAV66766.1 (hypothetical protein CFOL_v3_10276 [Cephalotus follicularis])

HSP 1 Score: 66.6 bits (161), Expect = 2.06e-11
Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 19  ILLCIFHVSAARVLTGERW---RPVSDRMLRGPVPPSGRNPCSFIPGLGRGRCTLS---- 78
           I+LC   + A R L GE+W   R V   + RGPV PSG NPC++IPG G GRCT      
Sbjct: 18  IVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCTYIPGRGTGRCTFEMDAA 77

Query: 79  --EVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPS 110
             +  D        S AFP       AA ++ N TQK D S
Sbjct: 78  THDTHDHE------SPAFPHPFVKFAAASSVANETQKPDNS 112

BLAST of Cp4.1LG07g09810 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 1.06e-35
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGPVPPSGRNPC 60
           M FS+MKT      AF+FI L I  +SAARVL GERW P   V   MLRGPVP S RNPC
Sbjct: 1   MAFSLMKT-----VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  SFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 111
           SFIPG  RGRCTLSEV++      GGSSAFPG+N DGFAA ++VN TQKQD S+
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

BLAST of Cp4.1LG07g09810 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 6.92e-33
Identity = 70/111 (63.06%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGPVPPSGRNPCSFI 60
           M FS++KT      AF+FI L IF VS  R L G R   V   +LRGPVP S RNPCSFI
Sbjct: 1   MAFSLVKT-----VAFLFIFLSIFDVSVGRWLPGSR---VPIAVLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 111
           PG  RGRCTLSEV+D A    GGSSAFPG+N DGFAA +MVN TQKQD SL
Sbjct: 61  PGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 103

BLAST of Cp4.1LG07g09810 vs. ExPASy TrEMBL
Match: A0A1Q3BFG1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.98e-12
Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 19  ILLCIFHVSAARVLTGERW---RPVSDRMLRGPVPPSGRNPCSFIPGLGRGRCTLS---- 78
           I+LC   + A R L GE+W   R V   + RGPV PSG NPC++IPG G GRCT      
Sbjct: 18  IVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCTYIPGRGTGRCTFEMDAA 77

Query: 79  --EVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPS 110
             +  D        S AFP       AA ++ N TQK D S
Sbjct: 78  THDTHDHE------SPAFPHPFVKFAAASSVANETQKPDNS 112

BLAST of Cp4.1LG07g09810 vs. ExPASy TrEMBL
Match: A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.74e-11
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 0

Query: 17  VFILLCIFHVSAARVLTGERWRPVS---DRMLRGPVPPSGRNPCSFIPGLGRGRCTLSEV 76
           +F +LC   +SA R L  E+W         + RGPVP SG NPC++IPG G GRCTL+E 
Sbjct: 53  IFSVLCFRQLSAMRPLEEEQWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRCTLAEN 112

Query: 77  EDEAGGGGGGSSAFPGMNFDGF----AAGAMVNGTQKQDPS 110
           E    GG    +  P   F  F    AA +  N T+K+D S
Sbjct: 113 EMNFAGGHDNVAPAPPAAFPDFMVKFAAASKDNDTRKKDTS 153

BLAST of Cp4.1LG07g09810 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.75e-11
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 16  FVFILLCIFHVS---AARVLTGERW----RPVSDRML-RGPVPPSGRNPCSFIPGLGRGR 75
           FVF +L +F      A R L GE W    + ++ + L RGPV PSG NPC++IPG  RGR
Sbjct: 9   FVFTVLLLFGCRENLATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGR 68

Query: 76  CTLSEVEDEAGG--GGGGSSAFPGMNFDGFAAGAMVNGTQKQDPS 110
           CTL+E E    G  G     AFPG+    FA  +  N ++KQD S
Sbjct: 69  CTLAENESNYSGRVGHAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6586324.11.86e-6693.04hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60782.12.20e-3563.16hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.11.43e-3263.06hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.11.56e-3167.03hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
GAV66766.12.06e-1141.58hypothetical protein CFOL_v3_10276 [Cephalotus follicularis][more]
Match NameE-valueIdentityDescription
A0A0A0LJ841.06e-3563.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY26.92e-3363.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1Q3BFG19.98e-1241.58Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4... [more]
A0A5B6Z7Q11.74e-1141.58Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663... [more]
A0A6A4KR042.75e-1143.81Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 16..92
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 16..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09810.1Cp4.1LG07g09810.1mRNA