Cp4.1LG07g09490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g09490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMtN26
LocationCp4.1LG07: 8614906 .. 8616448 (+)
RNA-Seq ExpressionCp4.1LG07g09490
SyntenyCp4.1LG07g09490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTAAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCAATCTCTCTCAATCTCTCTCAATCTCTCTCTCTCCGATTTCTCTGTTCGTCGAAAATGGCGATCGAAATCGAATCATCCAACTCTCTGTTTCTTCTCCTTGTTTTGAAGGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTAAGTCCGTTTCCGGCCAAGTTTCCCCAAATCTTTCTTCGTTGCTTTCCGTCGCAATTTCCGAAGAACAAAACCCTAATTTAAATATTTATTTATTTATTTATTGGATAACTTTATAAGTCGAATTTAAAATATAATTATTTTTGTTTATGATTATATGTATTTATTTTTATTTTATTTTATTCGATAATTAAAATTTTCAATTATTTAGTCTATTTTAGCTTTTAAAATTAAAATTTTAACATATATATAAATATGTTATTTTATTTTTATATTTTCTTTGATAACTATAATTTTAGTTTTTAATATTTGGATAATATTTCTTTTTTCTTTTGGTAATTGTTTTTAATATTTTAAAAATTCTAATTAAATTATTATTAATCCAATTTTTTTTTAATAATAAGGATTAAATTTTAAAAAATACTTAAAATATAATTAACGTTTTAATTATTTGTATACTTAATTCAATCTCTTAACCTGTCATTGCTAATATTAAATATTTTATTTTTAAATGTTTGGAGTTTTTAAATATACGAGACTGCCACCTTATATATGCTTAGGTTGACTTGATTATGTAAATTATTTATATTATTTTTAATATAATTAGCGTTTTAATTATTGTTTTTAATAAAAAAACGAAATTAATTAAGTCTTCAAAAAAAAAATATAATTGATTTTTTATTTTTTATTTTTATAAATTGTCTTGCAGCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGCGAGAAGAACAATACGTATGCACACACGTGTGAATGCAGCTCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTGATTGTAAGATTCACTATTTATCCAATTTTTTTCAACTAAAAATATAATTTCAATTAAGTCGGGTAATATTTGGTCGTTAAATTCTTAAAATATTGTTTTCGAGTAATTTGTTCCTCGGTTGGAATAAACGTGTATTTTAATGTAATTTTGAAATTACGATCTAATTTTTGTTATTATATTATTTATAGGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

mRNA sequence

ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

Coding sequence (CDS)

ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

Protein sequence

MFIIFIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQSAPPPVPDKPVPRNSSFFNRTIGSDCAKLGIKVANVNSSDNGSGGSGTGQGTMFDYFFRFIF
Homology
BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: XP_023521139.1 (uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221 bits (564), Expect = 1.96e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 8   FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 67

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 68  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECSSGFYNLLNISAFPCYS 127

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: XP_022937685.1 (uncharacterized protein LOC111444015 [Cucurbita moschata])

HSP 1 Score: 221 bits (564), Expect = 4.29e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: XP_022965938.1 (uncharacterized protein LOC111465666 [Cucurbita maxima])

HSP 1 Score: 221 bits (564), Expect = 4.29e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: XP_023537938.1 (uncharacterized protein LOC111798832 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221 bits (564), Expect = 4.29e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECSSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: KAG6586301.1 (hypothetical protein SDJN03_19034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (553), Expect = 2.02e-69
Identity = 107/153 (69.93%), Postives = 109/153 (71.24%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. ExPASy TrEMBL
Match: A0A6J1HQE9 (uncharacterized protein LOC111465666 OS=Cucurbita maxima OX=3661 GN=LOC111465666 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 2.08e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. ExPASy TrEMBL
Match: A0A6J1FHH1 (uncharacterized protein LOC111444015 OS=Cucurbita moschata OX=3662 GN=LOC111444015 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 2.08e-71
Identity = 109/153 (71.24%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 64
           F+DKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ
Sbjct: 32  FLDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 91

Query: 65  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
           SAPPPVPDKPVPRNSSFFN                                         
Sbjct: 92  SAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYS 151

BLAST of Cp4.1LG07g09490 vs. ExPASy TrEMBL
Match: A0A6J1CPY4 (uncharacterized protein LOC111013088 OS=Momordica charantia OX=3673 GN=LOC111013088 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.25e-53
Identity = 91/154 (59.09%), Postives = 99/154 (64.29%), Query Frame = 0

Query: 5   FIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGC 64
           F +K+C+EVNCGKGNCT D  YPF F C CDSGWKRTRD+DDDLTFLPCVIPNCSL+YGC
Sbjct: 32  FFEKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIPNCSLNYGC 91

Query: 65  QSAPPPVPDKPVPRNSSFFNR--------------------------------------- 115
           Q APPPVPDK VPRNSSFF+                                        
Sbjct: 92  QPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTCSCNPGYYNLLNTSAFPCY 151

BLAST of Cp4.1LG07g09490 vs. ExPASy TrEMBL
Match: A0A0A0LLE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011540 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 9.36e-52
Identity = 89/154 (57.79%), Postives = 98/154 (63.64%), Query Frame = 0

Query: 7   DKICDEVNCGKGNCTTD-DVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 66
           DK+C+EVNCGKGNCT   +  PF F CECD GWKRTRD+DDDL FLPCVIPNC+LDYGCQ
Sbjct: 35  DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLDYGCQ 94

Query: 67  SAPPPVPDKPVPRNSSFFNR---------------------------------------- 115
            APPPVP+KPVP+NSSFFN                                         
Sbjct: 95  PAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLLNISTFPCYS 154

BLAST of Cp4.1LG07g09490 vs. ExPASy TrEMBL
Match: A0A5A7VDL6 (MtN26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001320 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 7.26e-51
Identity = 85/154 (55.19%), Postives = 95/154 (61.69%), Query Frame = 0

Query: 6   IDKICDEVNCGKGNCTTD-DVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGC 65
           +DK+C+EVNCGKGNCT   +  PF F CECD GWKRTRD+DDDL FLPCVIPNC+L+YGC
Sbjct: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLNYGC 68

Query: 66  QSAPPPVPDKPVPRNSSFFNR--------------------------------------- 115
           Q APPPVP+KPVP+NSSFFN                                        
Sbjct: 69  QPAPPPVPEKPVPKNSSFFNPCYWAYCGEGDCVRNKTYIHTCECRPGFYNLLNISTFPCY 128

BLAST of Cp4.1LG07g09490 vs. TAIR 10
Match: AT4G14746.1 (CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 1   MFIIFIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSL 60
           +F    D IC EV CGKG C       F ++CEC+ GWK+    D  L FLPC+ PNC+ 
Sbjct: 30  LFAPVYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQ---FDQHLKFLPCITPNCTF 89

Query: 61  DYGCQSAPPPVPDKPVPRN--SSFFNRTIGSDC 91
           D  C  A  P   KP P++  +SFF+     DC
Sbjct: 90  DLTCGEAASPAQPKPPPKDNITSFFDPCQWMDC 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023521139.11.96e-7171.24uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo][more]
XP_022937685.14.29e-7171.24uncharacterized protein LOC111444015 [Cucurbita moschata][more]
XP_022965938.14.29e-7171.24uncharacterized protein LOC111465666 [Cucurbita maxima][more]
XP_023537938.14.29e-7171.24uncharacterized protein LOC111798832 [Cucurbita pepo subsp. pepo][more]
KAG6586301.12.02e-6969.93hypothetical protein SDJN03_19034, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1HQE92.08e-7171.24uncharacterized protein LOC111465666 OS=Cucurbita maxima OX=3661 GN=LOC111465666... [more]
A0A6J1FHH12.08e-7171.24uncharacterized protein LOC111444015 OS=Cucurbita moschata OX=3662 GN=LOC1114440... [more]
A0A6J1CPY41.25e-5359.09uncharacterized protein LOC111013088 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0LLE29.36e-5257.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011540 PE=4 SV=1[more]
A0A5A7VDL67.26e-5155.19MtN26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001320 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT4G14746.11.1e-1541.94CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33881:SF10MTN26coord: 5..83
NoneNo IPR availablePANTHERPTHR33881NEUROGENIC LOCUS NOTCH-LIKE PROTEINcoord: 5..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09490.1Cp4.1LG07g09490.1mRNA