Cp4.1LG07g08560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g08560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH149-like
Location	Cp4.1LG07: 7716155 .. 7716739 (-)
RNA-Seq Expression	Cp4.1LG07g08560
Synteny	Cp4.1LG07g08560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

mRNA sequence

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

Coding sequence (CDS)

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

Protein sequence

MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGAQSN

Homology

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-35
Identity = 92/159 (57.86%), Postives = 116/159 (72.96%), Query Frame = 0


Query: 39  RKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPIN------GRLVRETADCVLAAVAK 98
           ++W+T   QQIY+ KLVEA+R+V R+RSS  + +  +       R +R+TAD VLAA A+
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRV-RQRSSTTSNNETDKLVSGAAREIRDTADRVLAASAR 101

Query: 99  GRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLV 158
           G TRWSRAILASR R +L + R+ KK  G   SR   T++ +  KLPAV+RK+KILGRLV
Sbjct: 102 GTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNR-IKLPAVERKLKILGRLV 161

Query: 159 PGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGA 192
           PGCRK+S PNLL+E TDYI+ALEMQVRAM AL ELL  A
Sbjct: 162 PGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAA 198

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy Swiss-Prot
Match: Q9LSN7 (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-28
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 0


Query: 5   PISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ--VS 64
           P + +  S  SRR  ++ +    +           KWR+E +QQIYS+KLV A+R+  +S
Sbjct: 14  PTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRIS 73

Query: 65  RRRSSAQAGS-PINGRLVRETADCVLAAVAKGRTRWSRAILASRF--------RQRLARR 124
           ++ SS+ + S P  GR VRE AD  LA  A+G+T WSRAIL+           RQR++  
Sbjct: 74  QQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNP 133

Query: 125 RRTKKLIG--RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYI 184
             T    G  R   + A     K K LPAVQRKVK+L RLVPGCRK S P +LEETTDYI
Sbjct: 134 TTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYI 193

Query: 185 SALEMQVRAMAALVELLAGA 192
           +A+EMQ+R M A++  ++ +
Sbjct: 194 AAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 0


Query: 6   ISDAEESKNSRRLLQQPNKR---------RKIASDVCAEGRERKWRTEVEQQIYSSKLVE 65
           ISD E   ++   L +  KR         R  AS V  E   R WR+E +Q+IYS+KL +
Sbjct: 5   ISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHAR-WRSEKQQRIYSAKLFQ 64

Query: 66  AIRQVSRRRSSAQAGSPI---NGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARR 125
           A++QV    S++ + SP     G+ VRE AD  LA  A+GRT WSRAILA+R + +  ++
Sbjct: 65  ALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQ 124

Query: 126 RRTKKLI-------------GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSF 185
           RR +  +              R   R         K +P V RKV++LGRLVPGC K S 
Sbjct: 125 RRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSV 184

Query: 186 PNLLEETTDYISALEMQVRAMAALVELLA 190
           P +LEE TDYI ALEMQVRAM +LV+LL+
Sbjct: 185 PVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy Swiss-Prot
Match: Q9M9L6 (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 17  RLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPING 76
           +L++   + R  + +       R+WR    Q++YS KL +A+ Q SRR ++         
Sbjct: 39  KLMEALRRSRVSSEEAPVRHLSRRWRATTAQKVYSLKLYDAL-QRSRRSAT--------- 98

Query: 77  RLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNK 136
             VR+TAD VLA  A+G TRWSRAIL SRF   L RRR TK       +      S + +
Sbjct: 99  --VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR 158

Query: 137 KLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGAQ 193
           KL AV  +V++LG LVPGCR+ + P LL+ET DYI+ALEMQVRAM AL ++L+  Q
Sbjct: 159 KLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILSELQ 202

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: XP_023537600.1 (transcription factor bHLH149-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352 bits (904), Expect = 6.59e-122
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ
Sbjct: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: XP_022937811.1 (transcription factor bHLH149-like [Cucurbita moschata])

HSP 1 Score: 345 bits (886), Expect = 3.65e-119
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDA ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIR 
Sbjct: 1   MDDAPISDAAESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRH 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: KAG7021037.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345 bits (885), Expect = 5.19e-119
Identity = 189/194 (97.42%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDA ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIR 
Sbjct: 1   MDDAPISDAAESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRH 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSRMAETKSEKNKKLPAVQRKVKILGRL+PGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLIPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: KAG6586210.1 (Transcription factor basic helix-loop-helix 149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (883), Expect = 1.05e-118
Identity = 189/194 (97.42%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDA ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIR 
Sbjct: 1   MDDAPISDAAESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRH 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSRMAETKSEKNKKLP+VQRKVKILGRLVPGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRMAETKSEKNKKLPSVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: XP_022965958.1 (transcription factor bHLH149-like [Cucurbita maxima])

HSP 1 Score: 338 bits (867), Expect = 2.88e-116
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDAEESKNSRRLLQ+PNKRRKIA DV A+GRERKWRTEVEQQIYSSKLVEAIRQ
Sbjct: 1   MDDAPISDAEESKNSRRLLQKPNKRRKIAFDVGAKGRERKWRTEVEQQIYSSKLVEAIRQ 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSR+AETKSEKNKKLPAVQRKVKILGRLVPGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRIAETKSEKNKKLPAVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL
Match: A0A6J1FBF1 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111444091 PE=4 SV=1)

HSP 1 Score: 345 bits (886), Expect = 1.77e-119
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDA ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIR 
Sbjct: 1   MDDAPISDAAESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRH 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL
Match: A0A6J1HQH2 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111465681 PE=4 SV=1)

HSP 1 Score: 338 bits (867), Expect = 1.39e-116
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ 60
           MDDAPISDAEESKNSRRLLQ+PNKRRKIA DV A+GRERKWRTEVEQQIYSSKLVEAIRQ
Sbjct: 1   MDDAPISDAEESKNSRRLLQKPNKRRKIAFDVGAKGRERKWRTEVEQQIYSSKLVEAIRQ 60

Query: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLI 120
           VSRRRSSAQAGSPINGRLVRETADCVLAA AKGRTRWSRAILASRFRQRLARRRRTKKLI
Sbjct: 61  VSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLARRRRTKKLI 120

Query: 121 GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 180
           GRKPSR+AETKSEKNKKLPAVQRKVKILGRLVPGCRK+SFPNLLEETTDYISALEMQVRA
Sbjct: 121 GRKPSRIAETKSEKNKKLPAVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRA 180

Query: 181 MAALVELLAGAQSN 194
           MAALVELLAGAQSN
Sbjct: 181 MAALVELLAGAQSN 194

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL
Match: A0A6J1KCR3 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE=4 SV=1)

HSP 1 Score: 278 bits (712), Expect = 5.51e-93
Identity = 156/187 (83.42%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DAEESKNSRR LQ+PNKR +IAS+V AEGRER+WRTEVEQQIYSS+L EA+++VSR+RSS
Sbjct: 2   DAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRM 127
             A S INGRLVRETADCVLAA AKGRTRWSRAILA+RFRQRLARRRRTKK IGRKPSR+
Sbjct: 62  PHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRRTKKSIGRKPSRV 121

Query: 128 AETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVEL 187
            E K   N+KLPAVQRKVKILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AMAAL E+
Sbjct: 122 EEVK---NRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 181

Query: 188 LAGAQSN 194
           LAGAQSN
Sbjct: 182 LAGAQSN 185

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL
Match: A0A6J1G430 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 9.10e-92
Identity = 154/187 (82.35%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DAEESKNS+R LQ+PNKRR+IASDV AEGRER+WRTEVEQQIYSS+L EA+++V R  SS
Sbjct: 2   DAEESKNSKRSLQKPNKRRQIASDVSAEGRERRWRTEVEQQIYSSRLAEALQRVGRLPSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRM 127
             A S INGRLVRETADCVLAA AKGRTRWSRAILA+RFRQRLARRRRTKK IGRKPSR+
Sbjct: 62  PHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRRTKKSIGRKPSRV 121

Query: 128 AETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVEL 187
           AE K   N+KLPAVQRKV+ILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AMAAL E+
Sbjct: 122 AEVK---NRKLPAVQRKVRILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 181

Query: 188 LAGAQSN 194
           LAGAQ N
Sbjct: 182 LAGAQRN 185

[Close]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL
Match: A0A0A0LJ14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034620 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 1.11e-65
Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DA++S NS+ LLQ  NK   +   +  E  + +W+TE++QQIYSS+L +A+R+V+  RSS
Sbjct: 2   DADDSNNSKTLLQHSNKC--LPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRT--KKLIGRKPS 127
               SP+NG LVR TAD VLAA AKGRTRWSRAILA+RFRQ LARRRR   KKL+ RKP 
Sbjct: 62  ----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP- 121

Query: 128 RMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALV 187
              E K+EK +KLPAVQRKVKILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AM AL 
Sbjct: 122 ---ELKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALA 180

Query: 188 ELLAGAQSN 194
           ELLAG Q N
Sbjct: 182 ELLAGNQRN 180

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-36
Identity = 92/159 (57.86%), Postives = 116/159 (72.96%), Query Frame = 0


Query: 39  RKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPIN------GRLVRETADCVLAAVAK 98
           ++W+T   QQIY+ KLVEA+R+V R+RSS  + +  +       R +R+TAD VLAA A+
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRV-RQRSSTTSNNETDKLVSGAAREIRDTADRVLAASAR 101

Query: 99  GRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLV 158
           G TRWSRAILASR R +L + R+ KK  G   SR   T++ +  KLPAV+RK+KILGRLV
Sbjct: 102 GTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNR-IKLPAVERKLKILGRLV 161

Query: 159 PGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGA 192
           PGCRK+S PNLL+E TDYI+ALEMQVRAM AL ELL  A
Sbjct: 162 PGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAA 198

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR 10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-29
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 0


Query: 5   PISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ--VS 64
           P + +  S  SRR  ++ +    +           KWR+E +QQIYS+KLV A+R+  +S
Sbjct: 14  PTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRIS 73

Query: 65  RRRSSAQAGS-PINGRLVRETADCVLAAVAKGRTRWSRAILASRF--------RQRLARR 124
           ++ SS+ + S P  GR VRE AD  LA  A+G+T WSRAIL+           RQR++  
Sbjct: 74  QQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNP 133

Query: 125 RRTKKLIG--RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYI 184
             T    G  R   + A     K K LPAVQRKVK+L RLVPGCRK S P +LEETTDYI
Sbjct: 134 TTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYI 193

Query: 185 SALEMQVRAMAALVELLAGA 192
           +A+EMQ+R M A++  ++ +
Sbjct: 194 AAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR 10
Match: AT3G17100.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-29
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 0


Query: 5   PISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ--VS 64
           P + +  S  SRR  ++ +    +           KWR+E +QQIYS+KLV A+R+  +S
Sbjct: 14  PTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRIS 73

Query: 65  RRRSSAQAGS-PINGRLVRETADCVLAAVAKGRTRWSRAILASRF--------RQRLARR 124
           ++ SS+ + S P  GR VRE AD  LA  A+G+T WSRAIL+           RQR++  
Sbjct: 74  QQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNP 133

Query: 125 RRTKKLIG--RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYI 184
             T    G  R   + A     K K LPAVQRKVK+L RLVPGCRK S P +LEETTDYI
Sbjct: 134 TTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYI 193

Query: 185 SALEMQVRAMAALVELLAGA 192
           +A+EMQ+R M A++  ++ +
Sbjct: 194 AAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 0


Query: 6   ISDAEESKNSRRLLQQPNKR---------RKIASDVCAEGRERKWRTEVEQQIYSSKLVE 65
           ISD E   ++   L +  KR         R  AS V  E   R WR+E +Q+IYS+KL +
Sbjct: 5   ISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHAR-WRSEKQQRIYSAKLFQ 64

Query: 66  AIRQVSRRRSSAQAGSPI---NGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARR 125
           A++QV    S++ + SP     G+ VRE AD  LA  A+GRT WSRAILA+R + +  ++
Sbjct: 65  ALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQ 124

Query: 126 RRTKKLI-------------GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSF 185
           RR +  +              R   R         K +P V RKV++LGRLVPGC K S 
Sbjct: 125 RRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSV 184

Query: 186 PNLLEETTDYISALEMQVRAMAALVELLA 190
           P +LEE TDYI ALEMQVRAM +LV+LL+
Sbjct: 185 PVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR 10
Match: AT3G06590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 0


Query: 6   ISDAEESKNSRRLLQQPNKR---------RKIASDVCAEGRERKWRTEVEQQIYSSKLVE 65
           ISD E   ++   L +  KR         R  AS V  E   R WR+E +Q+IYS+KL +
Sbjct: 5   ISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHAR-WRSEKQQRIYSAKLFQ 64

Query: 66  AIRQVSRRRSSAQAGSPI---NGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARR 125
           A++QV    S++ + SP     G+ VRE AD  LA  A+GRT WSRAILA+R + +  ++
Sbjct: 65  ALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQ 124

Query: 126 RRTKKLI-------------GRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSF 185
           RR +  +              R   R         K +P V RKV++LGRLVPGC K S 
Sbjct: 125 RRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSV 184

Query: 186 PNLLEETTDYISALEMQVRAMAALVELLA 190
           P +LEE TDYI ALEMQVRAM +LV+LL+
Sbjct: 185 PVILEEATDYIQALEMQVRAMNSLVQLLS 212

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80482	4.1e-35	57.86	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9LSN7	6.3e-28	43.00	Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=...	[more]
Q9C8Z9	3.1e-27	42.58	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
Q9M9L6	1.3e-25	43.75	Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=...	[more]

BLAST of Cp4.1LG07g08560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537600.1	6.59e-122	100.00	transcription factor bHLH149-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937811.1	3.65e-119	97.94	transcription factor bHLH149-like [Cucurbita moschata]	[more]
KAG7021037.1	5.19e-119	97.42	Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586210.1	1.05e-118	97.42	Transcription factor basic helix-loop-helix 149, partial [Cucurbita argyrosperma...	[more]
XP_022965958.1	2.88e-116	96.39	transcription factor bHLH149-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG07g08560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBF1	1.77e-119	97.94	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111444091 ...	[more]
A0A6J1HQH2	1.39e-116	96.39	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111465681 PE...	[more]
A0A6J1KCR3	5.51e-93	83.42	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE...	[more]
A0A6J1G430	9.10e-92	82.35	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 ...	[more]
A0A0A0LJ14	1.11e-65	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034620 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09250.1	2.9e-36	57.86	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G17100.1	4.5e-29	43.00	sequence-specific DNA binding transcription factors	[more]
AT3G17100.2	4.5e-29	43.00	sequence-specific DNA binding transcription factors	[more]
AT3G06590.1	2.2e-28	42.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.2	2.2e-28	42.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33124:SF69	TRANSCRIPTION FACTOR BHLH149	coord: 16..191
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 16..191
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 125..174 score: 8.593963
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 131..185 e-value: 4.2997E-16 score: 67.2624
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 139..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08560.1	Cp4.1LG07g08560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding