Cp4.1LG07g07960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g07960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA-binding protein
Location	Cp4.1LG07: 7129413 .. 7136023 (+)
RNA-Seq Expression	Cp4.1LG07g07960
Synteny	Cp4.1LG07g07960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCGCTACCGTGAAGGCTGATGATCGGCACCCTGAAAATCGGAACGTTCTGAGCCCTAATTTCGAAGCTAATTTTGAGTTCTAACAGCTCTTTGGCCATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCCGCCCCTGCTCCCCAGTATCCCACTCCCTATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCCGCTCCGGCAGCTTACAATCTCCCTCAGTACCAGCAGGTAAGCAAAATCTGCATGCGATTGGAATTCGTGCTGCGGGATTGGGGTTTTGTTGTTTTGTGAATAGGGTTTGCGGGAAAATGTTATTCGGATGGACAGGGATTTGTTTAGATGAATTTATGGTGTAATTTTATCATTTTCCTTTGAATAAACAGGCCCAACAACTATTTCAAAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCAACACTTACTGAGTGGCCTGAAAGTATGGATTGTCTACTTTATTTGATTTCATGTATTTGCAATTACTGGCTTGTTTTGGCGTGCATTGTTTTTTCTTAATTTTTTTTTTTCTCTTAGGAATAGTTACATATAATTGATTTAGGAATAGTTACTTATAATTGATTTTGATGTTTGATATCAACTTGGCGTGCATTGTCTACCTGAGATGATGAGGAACAGCCACTTAAGAATTGTGTGAGCAGAAAGGGGGTAGAGGTTTCAAATGAAATGCATTGATTGAGTCGGTGAAAAGAAAAATGGGGATTAGATTCATTCTCATGGTGAACAAGCATGGCCAAAAACCCGCCTTGCTCATTATTATGGACATCTTACTCTCGAAGAATGTCGAGCTCTTGAGGGTGAAATTGTTTAGAAATGCCTCCTTTGTTATAATAGGTTCCTTTTGTCAAGCATTGGTGATGAAAACGAACTGGGAATTTTGGAAATCATTTGCTTTTTGGTGGAAACCATGGACTGTCATTTTGGGCATGTGTGTGAGCTAGATATAATGTTCCATCTAGATAAAAAGCACATTTCTTAATGGAGAAAATGGTCATGAATGGATTTATTGTAGAAACAAGCGAAGTGTAAATCCTATCCCCAATACAGTTGATGGATAAAACATCATAAAAGTTATGAATTTTTATCTTTGGTGCAAAGTTTTAGTAGGCCTATGTGTTGTATCAAATAAATGAATGAATTGATTTGGTGTTGCTCTATTCAAACAAGAATTTGAAGACATTGATTTGAAGCGTGAGCGACATACAAGGTTAGAGAGACTAGTTGATGATGGTTGTCGTAGAAGGTCTCATATTCAATATTGATTTTGAGAAAGCCTACAATCAGGTTGTTAGGAATTTCCAGACGAAGTCCCTAGAGAAAAAAAGGTTCAAATGGAAATGGAGAGATTGGATTGGAGTTGTTTAAGATCGATTGATTTCTCAATTTCTACAATGGGAGGCTGATTCACAAGATTTTTGTAGCTAGAGGCTTGAAAAGAGGATATCTTCTCCATCCCTTATTGTTCATTCTGATAGTAAATTTTTTGAGAAAGTTGGTCTTTAATAGTGTTGAGAAGGATTTAGTGGAGCGTTTTAGGGTGTGTTTTGAGAGGCTCCATTTGTGAGATCTCACATCGGTTGAGGAGGAGAACAAAACATCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTCGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATCTATTAGCGGTGGGCTTGGGCCGTCACAAATGGTATTAGAGCCAAACACCGGGCGATGTGCTAGCAAGGAGGTTGAGCCCTGAAGGGGGGTGGACACGAGGCGGTGTGCCAGCAAGGACGCTGGGCCCCGAAGGGGGTGGATTGGGGTGGGGGGTACCACATCGATTAGAGAAGGGAACGAGTGCCAGCGTCCTCGCTGGGCCTCGAAGGGGGTGGATTGCGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAACCTTGAAGGGAAGCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTGTTAGCGATGGGCTTGGGCTGTTACACCTTCTCTCGCACCTTTAGTTTGCTAATTGCATCCTCTTTTATGCTCAGGGAAGGAGAGTTCCTTTAATAATCATGATGGATTTTTGTCCTCTTTGATGCTGTTTCAGGCCTTAAGATAAATAGAGGGAATAGTACTATCATTGACTTAATTATGATCCATCTAAAGTGGATTCTTGGGCATCTTCGGTGGGTTGTGAGGTTAGTCAACTCCCTTCCCTTGCATGTATTTGGGTCTTCCCCTAAGGTGGTAGTCCAAAGAGTGGTTCTGGAACCCTGTGGTGGAGTAAATCCAAAAAGGGTTCTTTTCTTGGAAAAAAGAAAGGTTTTTCTTTCTTTAAGCAAGGGAGACTTCCCTTGATTCAGTCTGTGTTGAGTAAGATTCCTATATATTTCCCCTCTCAGTTCAAAATCTCAATTTCTGTGAGTAGAAGCATAGAGCCTTATGAGGAACTTTCTACGGGATGGAGTTGATAAGTGTGAGGGTTCACATGTGGTAAGATGGGAGATTGTTTTGAAGTTGATGGTGGTTTAGAGTTTAGGCATTGATACTTTGAGATTATTTAATAAGACTTGTGCCAATTTTCTAGGGAATCTAAAAATCATTATGAGTAGGTATGGACCACACATTTTTGAGTGAGCACTAAGCAATGGATTAAAAGGTTTTGGCAAAAATATTTGGACCATTGTGGCTGAAGGCTTCCCTTAGCTTTTCTAGTTCATTAAGTGTTTTGTTGAGAATGGGTCTGATACTTATTTTAGGGAGGATAAGTTGGGTTGGTGGCAAGCCTCTTTGTGAGTTGTTCCCACAATTGTGTCACTTGTTTGAGAAGAGGTTGCATTCAATCGCCTTGGCGTTGATCTCCTCCCATCCTTCCCCTTCGCTTTTTTTGGACTTTCGTTATCCTCTTTCTAATCATGAATATTTGGAGGTTGTGGGCCTTGGTGTACACTCTTAAATTTTTAGATTGGGATGTAGTTTTAACTTTTATCTTCCTCAGCTAGAAGTATTTCTTACTTTGGATAAATGTCCATTGTTGTTTGCAGATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTAAGTTTATTTTTTTCCAACATTCTACGTAATTCACCTTTTATTTTCACTTTTTTTTGGCATTCTGCGCAATGAGTAGTTTCCTTGAAGTGCTTTGATTTGTTTAAAAGGTGGTAATGCATCAGATACCTATGTATATACATTTGCATGTGGTTATGATTATGAAAGCATTTGAGGTTTCTGATATGTCCATGGGTTTCTATTCCTTGAATCTCCTTGTTTTTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTGTAGTTTTTACGTTTTAATCCTTTTCTAGTAAAAGAAAAAGAAACTTTTATATTTGTTTTGTTTTGGTTCTTAAATTTTTAAATATTTGGTTTAGCTTAAGCTTTCAAATGTTCTTTTTTCACCCCTTAAACTGTTGATAATAAACTAATTTAGTCGTGGCTGTTTTTGCTTCTTCTTCTATGTTTGTAATCATTTTGGATTTTCTAACCTGCTATTTATTATTAATGTTTTCATTATTATGATGATGAGCTTTCACAGAGAGTAATGGAAGAATACAAAAGGGCATACAAAAAATCAGTCCGATAAGTTGACCTGCTATCTATGGCTTCAAAAACTTATTTATACGGATGTTTACTCGACTAATAAAGACATAAAGATATGGTTTTCTTATGCAAATTTGAAGGACTAAGTAGAATATTTGAAAGACCAAAATGAATTAAGTATACAAGTTGCAGAAGTAAAATAGGATTCAAACCTATTTTTCATGTTTCTTAGATATTATTGTGAGGATCAAGAATTTTACTTAAGGAGGACATGATCATCTGATTGGGACTTGTGCAGCTGGAACCTCTGTATGAAGCTTTTATCCCTTAGAAATTACCGGGTTCATGGACTAGCTTGAGTTGTAACATGGTTGAGTCATTTAAGCTTGTCAGATACAGGTTAGCCCTCGAGCTATTAAAAGTGGGTCTTTTTTTTTTCTTGGTAGTTTGACCATCTTATTGCTTCTGATGCGGTACGAGGAACGTTACTTGAAATTGGCACAATACTATCCATGCAATTTTTTGACCAAGGGGCATGTAGACTATGGAAACTATCGTTTTGAAATACTATTCTTTTAACATTCATTTATGAATCTTGAAGATAAGAGCTGTTATAATGATGGGCCCTGTGATTTCCCCATGTCAGTCGGTGCATATACACGTGGCTTGTGGTCATTGTAGAGTCATACCATGAAATATGGTTATCTTCTTTCCCATTCCATATATGATATTGGGTGGGTCCTGTCATGGAAGAGTTGCTTGATTTTATGCTATTGTGTTGGTTATAATATCACGGGTTGAATTCATAATTTATTTCTCACGAACATTTGCAGTTTTTGAAGAACAATCCATTTCTAGGGCATTGCCCAATTGTTTTAAAGGGCTCCAATACCATAATTTTATGTGTGAACATGTTGGAGCCATTCTACCGATTTCATGGGGACAACTGCTCGACTCTATTACATTTAGTTGTCCAATATACTAGTTACTCTGCAAATTGACCTAATGTTTACCCCATGTCATAATTTTTTGGGATCGATCTACCATTTGATGCATCAAAACAATTTCGATCCTTCTCTTGGAAAACATACTAGCCGATGACTTTGTAGAGTGACCCAAAATATTTCAATATTTTATTTATGGTTTATATTTGGGGATTACATTTTTCTCTGTGGAATATTTTCTTTTTACCAACTGATTAACATAACATGCATATAATTGGTTTTAGGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTCAAAGAAATGAATGGTAATTACTCTGATTTTAGTTCTATATGGATCCTGTAGTTCTTTCATCTCTCTGTTGGACTTGTGCTTCTTGTTCAAATCTCACGACGCGTCTTGCGTATATCTGAATCCGTTCCTTTTTTCTTTTCTTTTTTCTGAGAAACTTTGCTTTCATAACATTGTTGATAAGAAAGTAGCCCTTCCTCAGCGATGAGGTGATATAGCTTGACAAGTTCAATTTAGGTTGTTATACAACATTGTTGTTCAAAAGATTTTGATTTTTTTTTTTTCTTTATATCTCAGAAATATTTTGTAGACAAATTTTAAGTTTTAGGTTTTGAAAGAAAATTGTTTTTTTGTATTCACAATTTGGTCAAGGAATTACTTTCTAAAAAAACACAATACATTGTTAGATAGACTCCAAATTTCTCTTATACCTTCCCTGGAGGAATTTTCCCTATGAATTATGAACGACATCGATCTATATGAACTAGCATGGATTAATCTCGTGGCCGAGTGCTCAAGCTTAGGTATCATCTAGGGTGTGCAGTGGCTAGAGTTTGGAAAGAAAATCGGGAGTTCGACCTGCTTCAATATCTCCCTTATATTTTCTAGAAAAACTCTGAAATCATTTAATCTCCCATTGTTAAATCCTCAAAGCCTCTTCTTTTGACGTCTATTCTATTTAAAAATTTATATGCTTAGACCCTTCTTCATCGCAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGGTAAAGTTACGATCCATAGGGGTGTTCTTTTGCACCTTTATTTCTTGTTTTTTTTAGTGTTCAATGCTTTAACTCTCTACTAATTTAATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAGAATGATCTGCATCCTTTTATTTCTGTTTACGCCCCGAACATAATCGTCAATCAAGTGATCAGTATCATATGGATAAACCTGTGTTCGAAAATTTGGTGAAGTTAGTATCTGATAGGGCTTTCTGTTCTCTGCTCCATTTAAGTGAAGGGATTATGCATTAGAGAACATGTTTACCTTGAAGAAATCAATCTTGTAAAGTGTTGTGAGCCATTCTCTCTAGCTTTTTAATGAATCAATGTGAAATTACAGCTTTTTATCATTTTTTTAGCTTATATTACAGCTTTTATATATATGTATTTACTAAAGATAGCAATGATACTTTATAATAATGTCCTGAATTCTTCTTGATGTCACATTTTTAAAA

mRNA sequence

ATATCGCTACCGTGAAGGCTGATGATCGGCACCCTGAAAATCGGAACGTTCTGAGCCCTAATTTCGAAGCTAATTTTGAGTTCTAACAGCTCTTTGGCCATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCCGCCCCTGCTCCCCAGTATCCCACTCCCTATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCCGCTCCGGCAGCTTACAATCTCCCTCAGTACCAGCAGGCCCAACAACTATTTCAAAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCAACACTTACTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTCAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAAGAATGATCTGCATCCTTTTATTTCTGTTTACGCCCCGAACATAATCGTCAATCAAGTGATCAGTATCATATGGATAAACCTGTGTTCGAAAATTTGGTGAAGTTAGTATCTGATAGGGCTTTCTGTTCTCTGCTCCATTTAAGTGAAGGGATTATGCATTAGAGAACATGTTTACCTTGAAGAAATCAATCTTGTAAAGTGTTGTGAGCCATTCTCTCTAGCTTTTTAATGAATCAATGTGAAATTACAGCTTTTTATCATTTTTTTAGCTTATATTACAGCTTTTATATATATGTATTTACTAAAGATAGCAATGATACTTTATAATAATGTCCTGAATTCTTCTTGATGTCACATTTTTAAAA

Coding sequence (CDS)

ATGGCGGGTCCTTTCTCGGCTCCTTCTGCAGCTTCTTCCTCATCAGGTGCCCAATTTACGTATTCAAATGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCCGCCCCTGCTCCCCAGTATCCCACTCCCTATGTCGCTGCTCCGGCTCCTCCAGCAGTTCCACTTCCCGTCGCCTCCGTATATCCGACTCCTGCTCCCGCTCCGGCAGCTTACAATCTCCCTCAGTACCAGCAGGCCCAACAACTATTTCAAAGGGATGCCCAAACGATAACTCCGGAAGCTCTTGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCTGGTCAATCTTGGGAGGACCCAACACTTACTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGTAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGATTTCCTTCCTTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGTTTCTCCAATCCTACTGACCTTGCTGGAGCACTCAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTACGAAGCCCTGGGAAGATACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

Protein sequence

MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK

Homology

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BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-40
Identity = 101/192 (52.60%), Postives = 121/192 (63.02%), Query Frame = 0


Query: 52  APAPPAV-----PLPVASVYPTPAPAPAAYN-----LPQYQQAQQLFQRDAQTITPEALE 111
           APA PAV     PL +A   P P P P         LP  +  + L  R      P   E
Sbjct: 241 APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPRPE 300

Query: 112 SVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEWPENDYRLFCGDLGN 171
                +A    E  +E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 301 PPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 360

Query: 172 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNR 227
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 361 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 420

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.6e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPAPAAYN-----LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P P         LP  +  + L
Sbjct: 259 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 318

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 319 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 378

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 379 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 438

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 227
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 439 RAMREMNGKYVGSRPIKLRKSMWKDR 462

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 3.6e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPAPAAYN-----LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P P         LP  +  + L
Sbjct: 257 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 316

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 317 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 376

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 227
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 437 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 3.6e-39
Identity = 100/206 (48.54%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 33  LQQSAPAAPAPQYPTPYVAAPAPPAVPLPVASVYPTPAPAPAAYN-----LPQYQQAQQL 92
           L++++ A        P   A   P++PL +A   P P P P         LP  +  + L
Sbjct: 257 LEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELL 316

Query: 93  FQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLTEW 152
             R      P   E     +A    E   E KKK  P K       AAG SWEDP+L EW
Sbjct: 317 SLRPRP--RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW 376

Query: 153 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 212
             +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D  
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436

Query: 213 GALKEMNGKYVGNRPIKLRKSNWKER 227
            A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 437 RAMREMNGKYVGSRPIKLRKSMWKDR 460

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-38
Identity = 96/213 (45.07%), Postives = 126/213 (59.15%), Query Frame = 0


Query: 28  PLPFHLQQSAPAAP-APQYPTPYVAAPAPPAVPLPVASVYPTPAPAPAAYNLPQYQQAQQ 87
           P P  ++   P AP  P  P P    P+ P +   V    PT   AP      +      
Sbjct: 162 PPPLGMRAGPPPAPVGPLPPPPRPVVPSAPKMNPTVIQAAPTVYTAPPVRKPEEEIVEPP 221

Query: 88  LFQRDAQTITPE------ALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWE 147
           +   + +T++ E      ++  ++       +E   E KKK  P K       AAG SWE
Sbjct: 222 ILPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKPEKLKRCIRTAAGTSWE 281

Query: 148 DPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSF 207
           D +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF
Sbjct: 282 DQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSF 341

Query: 208 SNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 227
            +P D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 342 KDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of Cp4.1LG07g07960 vs. NCBI nr
Match: XP_022937609.1 (RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo] >KAG7020984.1 RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 489 bits (1260), Expect = 3.22e-174
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. NCBI nr
Match: KAG6586152.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 488 bits (1256), Expect = 1.31e-173
Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAP APAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPGAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. NCBI nr
Match: XP_022965496.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 482 bits (1241), Expect = 2.73e-171
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPA--PAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAPA  PAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 253
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 255

[Close]

BLAST of Cp4.1LG07g07960 vs. NCBI nr
Match: XP_038890923.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 465 bits (1197), Expect = 1.29e-164
Identity = 241/253 (95.26%), Postives = 244/253 (96.44%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPSA SSSSG+QFTYSNGSYFPLPFHLQQSAPAA APQYP+PYVA P PPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAAAAPQYPSPYVAPPGPPAVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVASVYP PAPAPA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPPPAPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. NCBI nr
Match: XP_016899517.1 (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 454 bits (1169), Expect = 2.39e-160
Identity = 235/253 (92.89%), Postives = 239/253 (94.47%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVA VYP PAP PA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 1.56e-174
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL
Match: A0A6J1HLU5 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=1)

HSP 1 Score: 482 bits (1241), Expect = 1.32e-171
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVASVYPTPAPA--PAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           PVASVYPTPAPA  PAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  PVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240
           DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 253
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 255

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 1.16e-160
Identity = 235/253 (92.89%), Postives = 239/253 (94.47%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVA VYP PAP PA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL
Match: A0A0A0LH39 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.92e-159
Identity = 234/253 (92.49%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60
           MAGP SAPS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQY +PYVA P PP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PVA VYP PAP PA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240
           RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 253
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL
Match: A0A6J1D848 (RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1)

HSP 1 Score: 451 bits (1159), Expect = 4.02e-159
Identity = 237/254 (93.31%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MAGPFS-APSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60
           MAGP S APSAASSSSGAQFT+SN SYFPLPFHLQQSAP A A QYPTPYVAAP PP VP
Sbjct: 1   MAGPSSSAPSAASSSSGAQFTFSNASYFPLPFHLQQSAPPAAAAQYPTPYVAAPGPPPVP 60

Query: 61  LPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYPTPAP PA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPGPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRD 180
           KKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSK+FSRFPSFNMARVVRD
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARVVRD 180

Query: 181 KRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHT 240
           KRTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDYEAL R+KNHT
Sbjct: 181 KRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALERHKNHT 240

Query: 241 QKKSKLPKKSILHK 253
           QKKSKLPKKSILHK
Sbjct: 241 QKKSKLPKKSILHK 254

[Close]

BLAST of Cp4.1LG07g07960 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 340.9 bits (873), Expect = 8.8e-94
Identity = 185/250 (74.00%), Postives = 203/250 (81.20%), Query Frame = 0


Query: 10  AASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPLPVAS----- 69
           ++SSSS +Q+TY+  SY+  P+            Q P PY AAP+ PAVP PVAS     
Sbjct: 9   SSSSSSSSQYTYAANSYYSAPY------------QPPQPYAAAPS-PAVPAPVASIPGAT 68

Query: 70  VYPTP-APAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAI 129
           VYP P  P PA Y  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+AI
Sbjct: 69  VYPQPVGPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAI 128

Query: 130 PRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTG 189
           PRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRTG
Sbjct: 129 PRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTG 188

Query: 190 KTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKKS 249
           KTKGYGFVSF NP DLA ALKEMNGKYVGNRPIKLRKS+WKERTD EA  R K+H+ KK 
Sbjct: 189 KTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQ 245

Query: 250 KLPKKSILHK 254
           K  KKSILHK
Sbjct: 249 KTVKKSILHK 245

[Close]

BLAST of Cp4.1LG07g07960 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 145 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK 204
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 205 EMNGKYVGNRPIKLRKSNW 224
           EMNGK++ +R I   + NW
Sbjct: 204 EMNGKWLSSRQI---RCNW 219

[Close]

BLAST of Cp4.1LG07g07960 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 144 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 203
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 204 LKEMNGKYVGNRPIKL 219
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

[Close]

BLAST of Cp4.1LG07g07960 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 145 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK 204
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 205 EMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKKS 244
           E+ GK++G+R I   + NW   T     G  K  +  KS
Sbjct: 199 EITGKWLGSRQI---RCNW--ATKGATSGEDKQSSDSKS 232

[Close]

BLAST of Cp4.1LG07g07960 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 145 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK 204
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 205 EMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQKKS 244
           E+ GK++G+R I   + NW   T     G  K  +  KS
Sbjct: 199 EITGKWLGSRQI---RCNW--ATKGATSGEDKQSSDSKS 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g07960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0P5L0	1.9e-40	52.60	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	3.6e-39	48.54	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	3.6e-39	48.54	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	3.6e-39	48.54	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]
Q66KL9	2.3e-38	45.07	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g07960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937609.1	3.22e-174	100.00	RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding pro...	[more]
KAG6586152.1	1.31e-173	99.60	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022965496.1	2.73e-171	98.82	RNA-binding protein 42-like [Cucurbita maxima]	[more]
XP_038890923.1	1.29e-164	95.26	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_016899517.1	2.39e-160	92.89	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]	[more]

BLAST of Cp4.1LG07g07960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBP0	1.56e-174	100.00	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]
A0A6J1HLU5	1.32e-171	98.82	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=...	[more]
A0A1S4DU47	1.16e-160	92.89	LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A0A0LH39	1.92e-159	92.49	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV...	[more]
A0A6J1D848	4.02e-159	93.31	RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g07960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	8.8e-94	74.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G14100.1	9.1e-14	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G19130.1	7.7e-13	46.05	RNA-binding protein 47B	[more]
AT1G17370.1	1.0e-12	39.39	oligouridylate binding protein 1B	[more]
AT1G17370.2	1.0e-12	39.39	oligouridylate binding protein 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 146..219 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 147..217 e-value: 8.1E-18 score: 64.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 145..223 score: 16.124914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 80..219 e-value: 3.0E-23 score: 84.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..253
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 37..253
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 37..253
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 139..221 e-value: 4.61803E-56 score: 172.407
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 128..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g07960.1	Cp4.1LG07g07960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding