Cp4.1LG07g07910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g07910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	R3H domain containing protein
Location	Cp4.1LG07: 7000128 .. 7004430 (-)
RNA-Seq Expression	Cp4.1LG07g07910
Synteny	Cp4.1LG07g07910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTAACTTCTTCTTCTTTCTCTTTACTGCTTTCTTCTCACTTCACGAAGAATCGCATATTTTATCTCTAAATTGTTAGATTCTCTCAGTTGAATTCTCAGAATCCTTGGCGGGCTCTAGCATTTTTGGTATTTTTGATGAACTCACAGTGATGTACTTGGTGGTTTCTGGATCAGGGTATTAGGTAGTGCGGATTTTTGGTTTAATTGCGTTTTTTTGTAGGGTAATCGGTAGTTTCTGGATCAGGTTCAGTGATTTGAGATTTTGATGTATTTTTTGGTTTGTTGATTCTGCTTGGAATTGGAATTTGGCATATAAAAAGATGAGAAGGAGTGATTCAGTGAGTGTTATTCCCGGAAATGGAAGTAATTCGTACGCTGGAGTTCTGGAAATTTTGATGCAGTAGTTTTTTCGTTCTTTCTTATTATCAATAATTGGAACTCTTTTTTTGAAAATATTGTGTTCTTCGGGTTTATCCTTTTGTACTCCCTGTGATCAGTACCTTTATTCGTGTAAATGAAATTTAGTTCTTCAGCAAACAAAAAGAATAGATTTGTAGCGTAATATGCTGGAAGTTCTGGGAAAGTTGGTTAATGTCTGAAGCAATATGTTGTAAGATCAAGATGGGTTCTGACATTTTCTGTAGTTTTTTTATCTTCAAACCTTCCCTGGTGTACGCGTATTTCGATATTCGACGGTAGTTCTTTTCCATTTTTATGGATAAAGGTAGATTCCTTTAGTGCTAGAACAGCTAGTATTTGCAGTTACATAATTCTGCATTGTGCTATTTTCGTTAACATTCCTTTTTTTTCTTTTTTTCTTTTTCTCCTTATTGATGATATTTGACTCCTCAGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAAGTTTCTTCAGGATGAAACCAGGTAATGTGTTGATGATGATTACATGATGTTAGTTAGGTACTTTATGATATTATATTTGAAGTAGTTGTTCGAATTCCTTATGATATGCAACTGAAAGAAAAGAGACAGTTTGAATGTCGGGGTTGTTCTTATTTTACCCAAAGGGTTTGAATTAGCCCCCGACCCCGATCGTCCGTATTCCTCCCGAGATTAAAGAAACGATGGGCAATTTGTCTTTTCAGAGCTATCGTCCAATTTAGTAATATTTTTGTAATTTAGTAATATTTTTGTGTTTCAATTCCACCCAAGTGTGAAAGGGAAAAGTGGAAGGTTATGGTCTCAAACAAGGGTAGTTATCTATTTAGACGATAGCAACCACTTTTTATTCTGATGTTTGGTGCACTACTTCTCAAATTTCACTTTTATCTTGCATTTGAATAGCTTTAGATTTACATTGTTCTTTACCTATGGCTTGAATGGCGATCACTAACTTCAAATAATTGTTGCGGGTAGCAGTTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGGTGCCTTTTTCCCCCTCTTCTAGTTTGTATAAGGCTGAATTCTTAATTTTCTATGTCAAACTTTATGCCTACCTTCCTAAGTTTGTTCTTCTTCCCAATTCCTCTCTCAGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGTATTGAGAAATTCCTTACCGGAATTCCTTTTGGTTTAATATTTTCATATTCTAAATTGTTATTGGTATTGTATTTGATCTGATGTTGAAGCTAGGAATTTGAACAATTCCCGTGTCTATGCGTTTTCTTTACACTTGAAATAATTGAATAGAAAACTCACCCTCATTTTTATTTTCTTATAAACATCTTCACTATAGAAAAATGTTTTACTTTGAATTGGAGTTAGGCTCTTGAGATCTTTTATTATTTTTTGTATTGAAATAATTGAATAAACCTCTTAGTCCCCTTGATTTTGATTCAATGCAATGAACTCTTAGTCCTTTCTGCCTTTGATCAGCTCCACTAGGAATCCGTCCTGTTCTGAAATTTAGTCTGTATAGGAGGAAATGCAATCCAAGCTTTTCTCTAGTTATACTTGAATACAAGTAGGGATTACATACCACCCTCTCTCTCCCTTGCTATTGTGATTCACATTCTATTGGTTTTTCCCCAAATCGTACATCGACTCAGAGGGAGAAGATTTGGACTGCATAGGCGCACATCATAAGCTATATGGAAAGATGGACTATTTGTAATTCTTATCCATTAAGTTTTATTTATGACAAAAAAAACATTGGGATGTCATTTATTTCTTCATCATAGCTCACGTATTGCTTAAAGTGAAACGAGGATTCTTATATTTACGAACTATGAAACTGTAGGGGTATGGTAGGGACATGGGTGGTTCTAATAAAGGTCATTTGTTCATTAGCTTATTTGTGTATTGCAGGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGGTATACTATTGTTTCATACAGCATAATCCCTACCTGCAAATTTTTTCCAATTCATGCTATTGATTGCTATTTGATCATCAGAAAGACATGTGCACTAATAGTGGAGTTGTGGCCATTTGAAGATAGTAGAGGAGATAGTATGAACGTGTAATATTAATTTGTGAAAATGCCCTGCTGTGGTCTCTCTCTCTCTCTCTCTCTCTCTCCATATAATGGCATCAAAGGGAGTGATGCAGTGTGGAGAAACGTTGCTGTAGAGTAGAATAAAAGGTCTTCTCAGTAGGATTTGATAGGGATTCTGGATCTGAAGATTGAAGTTTAGGGAGAAAAGTAACTCTATGATAGAATGTGTATGTAAATATCTTTTTTGGGGGGTAAAAATGCTGTTCCAATTTTCACATGTACATGGAAGTTTGTTCAATCCCAAATTTGCAGATTTTCTTTCAGAAGGATTATAAGAAACTGAGTTGCCTGTACTTGATGTTCTATTTCAGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTAATCTAGATTATGTATTCCTTGTATGTGCTTGGAATTTGTCCCGGTCGTTTAAGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGCAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTGTGTTAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGTTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTGGACTCCTTAATATCAGTTGATATATCGTGTTTTACGTGATA

mRNA sequence

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAATTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTAATCTAGATTATGTATTCCTTGTATGTGCTTGGAATTTGTCCCGGTCGTTTAAGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGCAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTGTGTTAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGTTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTGGACTCCTTAATATCAGTTGATATATCGTGTTTTACGTGATA

Coding sequence (CDS)

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAATTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGA

Protein sequence

TSGSLKPVVVSLLRKSIAPIETPIQSSTFLPTMAITQFAMVEELAFLVKENLPSKHLILSMEDVFVNSDGILELEPMDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR

Homology

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy Swiss-Prot
Match: A0JNC2 (R3H domain-containing protein 2 OS=Bos taurus OX=9913 GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.8e-05
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = 0


Query: 42  EELAFLVKENLPSKHLILSMEDVFV-----NSDGILELEPMDSYNRLLLHRLADIFGFSH 101
           E L   +K+N   + ++L +E   +     N++   +   M SY+R+LLHR+A  FG  H
Sbjct: 156 EFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDH 215

Query: 102 --VSVGEGVDRHLVLE-RCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENS-SVSL 161
                G+ V  +     R PE      +  +   E+ +  I       + R +N   V L
Sbjct: 216 NVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPL 275

Query: 162 KKSPPQRSFEEREAAYLAVRERIFMMHIGED 184
           +     +S EERE  Y  VRERIF    G++
Sbjct: 276 QDGRRSKSIEEREEEYQRVRERIFARETGQN 306

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy Swiss-Prot
Match: Q80TM6 (R3H domain-containing protein 2 OS=Mus musculus OX=10090 GN=R3hdm2 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 5.8e-05
Identity = 42/151 (27.81%), Postives = 66/151 (43.71%), Query Frame = 0


Query: 42  EELAFLVKENLPSKHLILSMEDVFV-----NSDGILELEPMDSYNRLLLHRLADIFGFSH 101
           E L   +K+N   + ++L +E   +     N++   +   M SY+R+LLHR+A  FG  H
Sbjct: 156 EFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDH 215

Query: 102 VSVGEG---VDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENS-SVSL 161
                G   +       R PE      +  +   E+ +  I       + R +N   V L
Sbjct: 216 NVDQTGKAVIINKTSSTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPL 275

Query: 162 KKSPPQRSFEEREAAYLAVRERIFMMHIGED 184
           +     +S EERE  Y  VRERIF    G++
Sbjct: 276 QDGRRSKSIEEREEEYQRVRERIFARETGQN 306

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: XP_023538509.1 (uncharacterized protein LOC111799266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571 bits (1472), Expect = 2.75e-204
Identity = 299/307 (97.39%), Postives = 300/307 (97.72%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLL 92
           MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK
Sbjct: 61  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA
Sbjct: 121 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA
Sbjct: 181 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
           GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK
Sbjct: 241 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: XP_022937642.1 (uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata])

HSP 1 Score: 557 bits (1436), Expect = 8.39e-199
Identity = 291/307 (94.79%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLL 92
           MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK
Sbjct: 61  HRLADIFGFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSSVSLKKSPPQR+FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA
Sbjct: 121 ENSSVSLKKSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LGKRINSSPEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA
Sbjct: 181 LGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
           GKNRNPIRSSARGSN+AA KMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRK
Sbjct: 241 GKNRNPIRSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: XP_022965481.1 (uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482.1 uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima])

HSP 1 Score: 547 bits (1409), Expect = 1.09e-194
Identity = 287/307 (93.49%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLL 92
           MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+HVSVGEG DRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK
Sbjct: 61  HRLADIFGFAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSSVSL+KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA
Sbjct: 121 ENSSVSLEKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LGKRINSSPEAT+NH KEQGSVANNAYVQANELKEPDSTVEVVNKTKLQ DQCVNSKNE 
Sbjct: 181 LGKRINSSPEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEV 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
            KNRNP RSSARGSNAAA KMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQ RK
Sbjct: 241 SKNRNPSRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: KAG6586140.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 545 bits (1404), Expect = 4.46e-184
Identity = 284/299 (94.98%), Postives = 290/299 (96.99%), Query Frame = 0


Query: 41   VEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLLHRLADIFG 100
            VEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLLHRLADIFG
Sbjct: 707  VEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLLHRLADIFG 766

Query: 101  FSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 160
            F+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 767  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 826

Query: 161  KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 220
            KSPPQR+FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 827  KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 886

Query: 221  PEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 280
            PEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR
Sbjct: 887  PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 946

Query: 281  SSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 332
            SSARGSN+AA KMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 947  SSARGSNSAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 1005

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: XP_022937643.1 (uncharacterized protein LOC111443986 isoform X2 [Cucurbita moschata])

HSP 1 Score: 484 bits (1247), Expect = 7.97e-171
Identity = 248/256 (96.88%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 77  MDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST 136
           MDSYNRLLLHRLADIFGF+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST
Sbjct: 1   MDSYNRLLLHRLADIFGFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST 60

Query: 137 IPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 196
           IPHQLLRRKENSSVSLKKSPPQR+FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV
Sbjct: 61  IPHQLLRRKENSSVSLKKSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 120

Query: 197 VARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPD 256
           VARRMIAHALGKRINSSPEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQPD
Sbjct: 121 VARRMIAHALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPD 180

Query: 257 QCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFS 316
           QCVNSKNEAGKNRNPIRSSARGSN+AA KMKADKSSPKASCVDNEYL REHLGAAKRMFS
Sbjct: 181 QCVNSKNEAGKNRNPIRSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFS 240

Query: 317 QALGKQSRKNESLPTR 332
           QALGKQSRKNESLPTR
Sbjct: 241 QALGKQSRKNESLPTR 256

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL
Match: A0A6J1FBT0 (uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443986 PE=4 SV=1)

HSP 1 Score: 557 bits (1436), Expect = 4.06e-199
Identity = 291/307 (94.79%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLL 92
           MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK
Sbjct: 61  HRLADIFGFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSSVSLKKSPPQR+FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA
Sbjct: 121 ENSSVSLKKSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LGKRINSSPEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA
Sbjct: 181 LGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
           GKNRNPIRSSARGSN+AA KMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRK
Sbjct: 241 GKNRNPIRSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL
Match: A0A6J1HKF9 (uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465372 PE=4 SV=1)

HSP 1 Score: 547 bits (1409), Expect = 5.27e-195
Identity = 287/307 (93.49%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV-------NSDGILELEPMDSYNRLLL 92
           MAITQFAMVEELAFLVKENLPSKHLILSMEDVFV       +SDGILELEPMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+HVSVGEG DRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK
Sbjct: 61  HRLADIFGFAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSSVSL+KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA
Sbjct: 121 ENSSVSLEKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LGKRINSSPEAT+NH KEQGSVANNAYVQANELKEPDSTVEVVNKTKLQ DQCVNSKNE 
Sbjct: 181 LGKRINSSPEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEV 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
            KNRNP RSSARGSNAAA KMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQ RK
Sbjct: 241 SKNRNPSRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL
Match: A0A6J1FGJ0 (uncharacterized protein LOC111443986 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443986 PE=4 SV=1)

HSP 1 Score: 484 bits (1247), Expect = 3.86e-171
Identity = 248/256 (96.88%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 77  MDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST 136
           MDSYNRLLLHRLADIFGF+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST
Sbjct: 1   MDSYNRLLLHRLADIFGFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST 60

Query: 137 IPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 196
           IPHQLLRRKENSSVSLKKSPPQR+FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV
Sbjct: 61  IPHQLLRRKENSSVSLKKSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 120

Query: 197 VARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPD 256
           VARRMIAHALGKRINSSPEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQPD
Sbjct: 121 VARRMIAHALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPD 180

Query: 257 QCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFS 316
           QCVNSKNEAGKNRNPIRSSARGSN+AA KMKADKSSPKASCVDNEYL REHLGAAKRMFS
Sbjct: 181 QCVNSKNEAGKNRNPIRSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFS 240

Query: 317 QALGKQSRKNESLPTR 332
           QALGKQSRKNESLPTR
Sbjct: 241 QALGKQSRKNESLPTR 256

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL
Match: A0A6J1HP21 (uncharacterized protein LOC111465372 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465372 PE=4 SV=1)

HSP 1 Score: 474 bits (1220), Expect = 4.99e-167
Identity = 244/256 (95.31%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 77  MDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQIST 136
           MDSYNRLLLHRLADIFGF+HVSVGEG DRHLVLERCPESSMPSILVSDILWEYDEPQIST
Sbjct: 1   MDSYNRLLLHRLADIFGFAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQIST 60

Query: 137 IPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 196
           IPHQLLRRKENSSVSL+KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV
Sbjct: 61  IPHQLLRRKENSSVSLEKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPV 120

Query: 197 VARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPD 256
           VARRMIAHALGKRINSSPEAT+NH KEQGSVANNAYVQANELKEPDSTVEVVNKTKLQ D
Sbjct: 121 VARRMIAHALGKRINSSPEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTD 180

Query: 257 QCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFS 316
           QCVNSKNE  KNRNP RSSARGSNAAA KMKADKSSPKASCVDNEYLKREHLGAAKRMFS
Sbjct: 181 QCVNSKNEVSKNRNPSRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFS 240

Query: 317 QALGKQSRKNESLPTR 332
           QALGKQ RKNESL TR
Sbjct: 241 QALGKQGRKNESLQTR 256

[Close]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL
Match: A0A0A0LH15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 1.38e-151
Identity = 236/307 (76.87%), Postives = 254/307 (82.74%), Query Frame = 0


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N       SDGILEL+PMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFG  HVSVGEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRRK
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSS S  KS PQRS EEREAAYLAVRERIFM H+GED+EP KPKPRCDP VARRMIAHA
Sbjct: 121 ENSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LG+R+NS  E T+ H KEQG V NNAY+QA + K PDSTVE +NKT  + DQCVN KNE 
Sbjct: 181 LGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNEL 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
            KN NP  S ARGS AA  KMK  KS PKAS VDNE+LKREHLGAAKRMFSQALGK  RK
Sbjct: 241 DKNCNPDVSLARGSTAA--KMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRK 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g07910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0JNC2	5.8e-05	28.48	R3H domain-containing protein 2 OS=Bos taurus OX=9913 GN=R3HDM2 PE=2 SV=1	[more]
Q80TM6	5.8e-05	27.81	R3H domain-containing protein 2 OS=Mus musculus OX=10090 GN=R3hdm2 PE=1 SV=2	[more]

BLAST of Cp4.1LG07g07910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538509.1	2.75e-204	97.39	uncharacterized protein LOC111799266 [Cucurbita pepo subsp. pepo]	[more]
XP_022937642.1	8.39e-199	94.79	uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata]	[more]
XP_022965481.1	1.09e-194	93.49	uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482...	[more]
KAG6586140.1	4.46e-184	94.98	TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [...	[more]
XP_022937643.1	7.97e-171	96.88	uncharacterized protein LOC111443986 isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBT0	4.06e-199	94.79	uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HKF9	5.27e-195	93.49	uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FGJ0	3.86e-171	96.88	uncharacterized protein LOC111443986 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HP21	4.99e-167	95.31	uncharacterized protein LOC111465372 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LH15	1.38e-151	76.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g07910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 34..112 e-value: 3.7E-4 score: 29.8
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 65..110 e-value: 7.0E-13 score: 48.3
IPR001374	R3H domain	PROSITE	PS51061	R3H	coord: 48..113 score: 12.748699
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 143..177 e-value: 2.2E-8 score: 34.7
IPR024771	SUZ domain	PROSITE	PS51673	SUZ	coord: 116..180 score: 9.227232
IPR036867	R3H domain superfamily	GENE3D	3.30.1370.50		coord: 33..149 e-value: 8.9E-16 score: 59.7
IPR036867	R3H domain superfamily	SUPERFAMILY	82708	R3H domain	coord: 47..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..277
None	No IPR available	PANTHER	PTHR15672:SF25	RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1	coord: 34..328
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 34..328
None	No IPR available	CDD	cd02642	R3H_encore_like	coord: 54..112 e-value: 5.19052E-13 score: 61.0793

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g07910.1	Cp4.1LG07g07910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding