Cp4.1LG07g07450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g07450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH146-like
Location	Cp4.1LG07: 6426606 .. 6427028 (-)
RNA-Seq Expression	Cp4.1LG07g07450
Synteny	Cp4.1LG07g07450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA

mRNA sequence

ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA

Coding sequence (CDS)

ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA

Protein sequence

MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

Homology

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 20  QKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHE 79
           ++ VK EVDMA+A SA EF+W   L +KL      N +     S   ++     LER  +
Sbjct: 48  KQTVKHEVDMALALSAQEFAWSRFLLQKL--SSSSNPTTTTSSSSDGIRI----LERPDK 107

Query: 80  EHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT 139
           E    +E  IE  L +L+K++PGG   E+  +++  +  +YIKCLELQ   L+ +V  +T
Sbjct: 108 E-GGNEEGGIEERLRELKKLLPGGE--EMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 27  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHEEHEERKE 86
           V MA A   +   W  A    LL+R D + +    FS +  K S +           ++ 
Sbjct: 54  VSMARAAGGSSRLWSRA----LLRRADKDDNKIVRFSRRKWKISSK------RRRSNQRA 113

Query: 87  PKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVD 137
           P +E    +LR +VPGG  G +E   L ++T  YIKCL +QV V++CLVD
Sbjct: 114 PVVEEAAERLRNLVPGG--GGMETSKLMEETAHYIKCLSMQVKVMQCLVD 151

[Close]

BLAST of Cp4.1LG07g07450 vs. NCBI nr
Match: XP_023538247.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278 bits (711), Expect = 9.28e-94
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF
Sbjct: 34  MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 93

Query: 61  GFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESY 120
           GFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESY
Sbjct: 94  GFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESY 153

Query: 121 IKCLELQVNVLRCLVDTNTN 140
           IKCLELQVNVLRCLVDTNTN
Sbjct: 154 IKCLELQVNVLRCLVDTNTN 173

[Close]

BLAST of Cp4.1LG07g07450 vs. NCBI nr
Match: XP_022938205.1 (transcription factor bHLH146-like [Cucurbita moschata])

HSP 1 Score: 258 bits (659), Expect = 8.67e-86
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF
Sbjct: 34  MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 93

Query: 61  GFSLQTVKFSQENLEREHEEHEERKEP---KIENGLMKLRKIVPGGSNGELEEDDLFKQT 120
           G SLQ VKFS+ENLERE EEHEER+E    KIENGLMKLRKIVPGGSNGELEEDDLFKQT
Sbjct: 94  GLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQT 153

Query: 121 ESYIKCLELQVNVLRCLVDTNTN 140
           ESYIKCLELQVNVLRCLVDTNTN
Sbjct: 154 ESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Cp4.1LG07g07450 vs. NCBI nr
Match: KAG6586090.1 (Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (651), Expect = 1.44e-84
Identity = 132/143 (92.31%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQEQ+FQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF
Sbjct: 34  MTSLPKISHHHQQHQEQSFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 93

Query: 61  GFSLQTVKFSQENLEREHEEHEERKEP---KIENGLMKLRKIVPGGSNGELEEDDLFKQT 120
           G SLQ VKF++ENLERE EEHEER+E    KIENGLMKLRKIVPGGSNGELEEDDLFKQT
Sbjct: 94  GLSLQRVKFARENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQT 153

Query: 121 ESYIKCLELQVNVLRCLVDTNTN 140
           ESYIKCLELQVNVLRCLVDTNTN
Sbjct: 154 ESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Cp4.1LG07g07450 vs. NCBI nr
Match: XP_022969610.1 (transcription factor bHLH146-like [Cucurbita maxima])

HSP 1 Score: 253 bits (645), Expect = 1.26e-83
Identity = 133/146 (91.10%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQ+QNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED NGSNGF
Sbjct: 34  MTSLPKISHHHQQHQQQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDDNGSNGF 93

Query: 61  GFSLQTVKFSQENLERE------HEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLF 120
           GFSL  VKFS+ENLERE      HEEHEER+E KIENGLMKLRKIVPGGSNGELEEDDLF
Sbjct: 94  GFSL-PVKFSRENLEREDEEHEEHEEHEEREERKIENGLMKLRKIVPGGSNGELEEDDLF 153

Query: 121 KQTESYIKCLELQVNVLRCLVDTNTN 140
           KQTESYIKCLELQVNVLRCLVDTNTN
Sbjct: 154 KQTESYIKCLELQVNVLRCLVDTNTN 178

[Close]

BLAST of Cp4.1LG07g07450 vs. NCBI nr
Match: KAG7020915.1 (hypothetical protein SDJN02_17603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214 bits (544), Expect = 5.32e-69
Identity = 112/122 (91.80%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF
Sbjct: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60

Query: 61  GFSLQTVKFSQENLER---EHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQT 119
           G SLQ VKFS+ENLER   EHEE EE +E KIENGLMKLRKIVPGGSNGELEEDDLFKQT
Sbjct: 61  GLSLQRVKFSRENLERGDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQT 120

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 4.20e-86
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF
Sbjct: 34  MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 93

Query: 61  GFSLQTVKFSQENLEREHEEHEERKEP---KIENGLMKLRKIVPGGSNGELEEDDLFKQT 120
           G SLQ VKFS+ENLERE EEHEER+E    KIENGLMKLRKIVPGGSNGELEEDDLFKQT
Sbjct: 94  GLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQT 153

Query: 121 ESYIKCLELQVNVLRCLVDTNTN 140
           ESYIKCLELQVNVLRCLVDTNTN
Sbjct: 154 ESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 6.10e-84
Identity = 133/146 (91.10%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGF 60
           MTSLPKISHHHQQHQ+QNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED NGSNGF
Sbjct: 34  MTSLPKISHHHQQHQQQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDDNGSNGF 93

Query: 61  GFSLQTVKFSQENLERE------HEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLF 120
           GFSL  VKFS+ENLERE      HEEHEER+E KIENGLMKLRKIVPGGSNGELEEDDLF
Sbjct: 94  GFSL-PVKFSRENLEREDEEHEEHEEHEEREERKIENGLMKLRKIVPGGSNGELEEDDLF 153

Query: 121 KQTESYIKCLELQVNVLRCLVDTNTN 140
           KQTESYIKCLELQVNVLRCLVDTNTN
Sbjct: 154 KQTESYIKCLELQVNVLRCLVDTNTN 178

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL
Match: A0A0A0LJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 1.47e-53
Identity = 108/153 (70.59%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGS 60
           MTSL KISH   Q Q+QNF+KLVKFEVDMAMAQSA+EFSWG ALKKKLLQR+    GNG+
Sbjct: 34  MTSLVKISH---QQQQQNFRKLVKFEVDMAMAQSASEFSWGIALKKKLLQRDQQVLGNGN 93

Query: 61  -NGFGFSLQTVK-FSQENLEREHEEH----EERKEPKIENGLMKLRKIVPGGSN----GE 120
            NGF FS+QTVK  SQENL  E E+H    EE +E ++ENGLMKLRKI+PGG N    G 
Sbjct: 94  ENGFDFSVQTVKKTSQENLGNEEEDHHHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGN 153

Query: 121 L-EEDDLFKQTESYIKCLELQVNVLRCLVDTNT 139
           L EEDDL KQTESY+KCLELQVNVLR LV+TNT
Sbjct: 154 LDEEDDLLKQTESYVKCLELQVNVLRGLVETNT 183

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL
Match: A0A1S4DZN3 (uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 2.90e-52
Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED-----GN 60
           MTSL KISH   Q Q+QNFQKLV+FEVDMAMAQSA+EFSWG ALKKKLLQR+D     GN
Sbjct: 34  MTSLVKISH---QQQQQNFQKLVRFEVDMAMAQSASEFSWGIALKKKLLQRDDQQEVLGN 93

Query: 61  GS-NGFGFSLQTVK-FSQENLEREHEEH-------EERKEPKIENGLMKLRKIVPGGSNG 120
           GS NGF FSLQT+K  S +NL  E E+H       EE +E ++ENGLMKLRKI+PGG + 
Sbjct: 94  GSENGFDFSLQTMKKISHKNLGNEEEDHHEDEEEEEEEEEEEMENGLMKLRKIIPGGDDF 153

Query: 121 EL------EEDDLFKQTESYIKCLELQVNVLRCLVDTNT 139
            +      EEDDL KQTESY+KCLELQVNVLR LV+TNT
Sbjct: 154 SIGGNNLDEEDDLLKQTESYVKCLELQVNVLRGLVETNT 189

[Close]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 6.51e-52
Identity = 100/149 (67.11%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGS 60
           M SL KIS +HQ     N QK+VKFEVDMAMA SA+EF+WG+ALK+KLLQ+++   GNG 
Sbjct: 34  MASLSKISPNHQ-----NLQKVVKFEVDMAMALSASEFAWGHALKQKLLQKQENGNGNGR 93

Query: 61  NGFGFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGG-----SNGEL-EED 120
           N F FSLQT+KFS     RE EE EE  + K+ENGL+KLRKI+PGG     SNG+L EED
Sbjct: 94  NSFDFSLQTLKFS-----REKEEEEEEDKKKMENGLVKLRKILPGGENNNDSNGDLLEED 153

Query: 121 DLFKQTESYIKCLELQVNVLRCLVDTNTN 140
           DL KQTESYIKCLELQVNVLRCLVDTNT+
Sbjct: 154 DLLKQTESYIKCLELQVNVLRCLVDTNTD 172

[Close]

BLAST of Cp4.1LG07g07450 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 16  EQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQR--EDGNGSNGFGFSLQTVKFSQEN 75
           +Q+ ++ VK EVDMA A SA EF+W   L++KLL    +D   ++     +      ++ 
Sbjct: 51  KQSLEQTVKHEVDMAFALSAQEFAWSRFLQQKLLSSPYDDPISTSSSPSEILERSSKRQG 110

Query: 76  LEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRC 135
            E+  +  EE +  +I+  L +L+K++PGG   E+  +++  +  SYI CLELQ+ VL+ 
Sbjct: 111 GEKHQDSDEEEEGGEIKKRLKELQKLLPGGE--EMNMEEILSEIGSYIVCLELQMIVLKS 170

Query: 136 LVDTNTN 141
           +V  NT+
Sbjct: 171 IVQDNTS 175

[Close]

BLAST of Cp4.1LG07g07450 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 20  QKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHE 79
           ++ VK EVDMA+A SA EF+W   L +KL      N +     S   ++     LER  +
Sbjct: 48  KQTVKHEVDMALALSAQEFAWSRFLLQKL--SSSSNPTTTTSSSSDGIRI----LERPDK 107

Query: 80  EHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT 139
           E    +E  IE  L +L+K++PGG   E+  +++  +  +YIKCLELQ   L+ +V  +T
Sbjct: 108 E-GGNEEGGIEERLRELKKLLPGGE--EMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

[Close]

BLAST of Cp4.1LG07g07450 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 27  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHEEHEERKE 86
           V MA A   +   W  A    LL+R D + +    FS +  K S +           ++ 
Sbjct: 54  VSMARAAGGSSRLWSRA----LLRRADKDDNKIVRFSRRKWKISSK------RRRSNQRA 113

Query: 87  PKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVD 137
           P +E    +LR +VPGG  G +E   L ++T  YIKCL +QV V++CLVD
Sbjct: 114 PVVEEAAERLRNLVPGG--GGMETSKLMEETAHYIKCLSMQVKVMQCLVD 151

[Close]

BLAST of Cp4.1LG07g07450 vs. TAIR 10
Match: AT3G58850.1 (phy rapidly regulated 2 )

HSP 1 Score: 41.2 bits (95), Expect = 8.0e-04
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 66  TVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLE 125
           T   S+ ++E E +E EE  E KIE     L+ IVPGG+  EL  D LF++T SYI  L+
Sbjct: 41  TASVSETDVEDE-DEDEEGVEEKIE----ALQTIVPGGT--ELGVDALFEETASYILALQ 100

Query: 126 LQVNVLRCL 135
            Q+N ++ L
Sbjct: 101 CQINAIKVL 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g07450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM5	1.8e-08	35.83	Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=...	[more]
Q9SKX1	2.6e-07	34.55	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]

BLAST of Cp4.1LG07g07450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538247.1	9.28e-94	100.00	transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938205.1	8.67e-86	93.71	transcription factor bHLH146-like [Cucurbita moschata]	[more]
KAG6586090.1	1.44e-84	92.31	Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma...	[more]
XP_022969610.1	1.26e-83	91.10	transcription factor bHLH146-like [Cucurbita maxima]	[more]
KAG7020915.1	5.32e-69	91.80	hypothetical protein SDJN02_17603, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG07g07450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ33	4.20e-86	93.71	transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 ...	[more]
A0A6J1I0E6	6.10e-84	91.10	transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE...	[more]
A0A0A0LJA7	1.47e-53	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1	[more]
A0A1S4DZN3	2.90e-52	66.04	uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 S...	[more]
A0A6J1DIU0	6.51e-52	67.11	transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4...	[more]

BLAST of Cp4.1LG07g07450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18969.1	1.6e-12	33.86	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT4G30180.1	1.3e-09	35.83	sequence-specific DNA binding transcription factors;transcription regulators	[more]
AT2G43060.1	1.8e-08	34.55	ILI1 binding bHLH 1	[more]
AT3G58850.1	8.0e-04	43.48	phy rapidly regulated 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 64..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 67..138
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 2..72
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 2..72 coord: 67..138
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 87..135 e-value: 4.12937E-12 score: 55.3212
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 76..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g07450.1	Cp4.1LG07g07450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity