Cp4.1LG07g04790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g04790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor RAX3-like
Location	Cp4.1LG07: 3560774 .. 3561649 (-)
RNA-Seq Expression	Cp4.1LG07g04790
Synteny	Cp4.1LG07g04790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAAAATCATTTGTAGTCTCTATCTTAGTATTGGAAGCAGGTAATTTTTTTTCTTCAATCAAATCCCGAATCTCGAATCGTTTCATTTTAATTAGGGTTTGAGTTTCGAGAAAAAAAAAAAAATCAATTCTAAGGGTTTGGTATGGAATAGGTGGTCTATAATTGCAGCACAGTTACCAGGAAGAACGGATAACGACATAAAGAACTACTGGAACACGAGGTTGAAGAAGAAGCTATTCGGGAAGCAAAGGAAAGAGCATCAACAACAACAACAACAACAAGCAACTCGTCGAGGAAACGCCCTAAGGCATCACGGGACGATGAACAGAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGCTCCCAGTGGCACCAAGCTACTATAACAACATGCCATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGTAAATGGATATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTGTGTATGGAGATCATCATAATCAGCTAATGGGTACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTCCAAGATTTGTCAACCATGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTT

mRNA sequence

CTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAAAATCATTTGTAGTCTCTATCTTAGTATTGGAAGCAGAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGCTCCCAGTGGCACCAAGCTACTATAACAACATGCCATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGTAAATGGATATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTGTGTATGGAGATCATCATAATCAGCTAATGGGTACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTCCAAGATTTGTCAACCATGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTT

Coding sequence (CDS)

CTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAAAATCATTTGTAGTCTCTATCTTAGTATTGGAAGCAGAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGCTCCCAGTGGCACCAAGCTACTATAACAACATGCCATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGTAAATGGATATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTGTGTATGGAGATCATCATAATCAGCTAATGGGTACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTCCAAGATTTGTCAACCATGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTT

Protein sequence

LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSRSNSAIPYWPQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLENYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMTQEYDTHLKIMDSNAV

Homology

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-18
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR 44
          LKRCGKSCRLRWLNYLRPNIKHGGFSEEE+ IICSLYL+IGSR
Sbjct: 47 LKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSR 89

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-18
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR------------SNSAI 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+II SLY+SIGSR             N   
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  PYW-------------PQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNN 110
            YW                +Q  +  S  NN+ ++++    +NLS    + ++  +   N
Sbjct: 107 NYWNTKLKKKLLGRQKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQN 166

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-17
Identity = 36/43 (83.72%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR 44
          +KRCGKSCRLRWLNYLRPN+KHGGF++EED IICSLY++IGSR
Sbjct: 47 IKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSR 89

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR------------SNSAI 60
           L+RCGKSCRLRWLNYLRPNIKHG FSEEED+II SL+ +IGSR             N   
Sbjct: 47  LRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIK 106

Query: 61  PYWPQQQQLPVAPSYYNNMPS---SDHINPI 77
            YW  + +  +  S  ++  S   S ++NPI
Sbjct: 107 NYWNTKLRKKLLSSSSDSSSSAMASPYLNPI 137

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.2e-15
Identity = 49/106 (46.23%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR------------SNSAI 60
           L+RCGKSCRLRWLNYLRPNI+HG F+EEED II SL+ SIGSR             N   
Sbjct: 47  LRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIK 106

Query: 61  PYW--------------PQQQQLPVAPSYYNNMP-SSDHINPIENL 80
            YW              P    L +A S  +  P SS H N I +L
Sbjct: 107 NYWNTKLKKKLIATMAPPPHHHLAIATSSSSASPSSSSHYNMINSL 152

[Close]

BLAST of Cp4.1LG07g04790 vs. NCBI nr
Match: XP_023538436.1 (transcription factor RAX3-like [Cucurbita pepo subsp. pepo] >XP_023538441.1 transcription factor RAX3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389 bits (999), Expect = 1.04e-134
Identity = 196/255 (76.86%), Postives = 196/255 (76.86%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  ------------------------------------------SNSAIPYWPQQQQLPVAP 120
                                                     SNSAIPYWPQQQQLPVAP
Sbjct: 107 NYWNTRLKKKLFGKQRKEHQQQQQQQATRRGNALRHHGTMNRSNSAIPYWPQQQQLPVAP 166

Query: 121 SYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLE 180
           SYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLE
Sbjct: 167 SYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLE 226

Query: 181 NYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMT 196
           NYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMT
Sbjct: 227 NYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMT 286

[Close]

BLAST of Cp4.1LG07g04790 vs. NCBI nr
Match: XP_022951765.1 (transcription factor RAX3-like [Cucurbita moschata])

HSP 1 Score: 377 bits (968), Expect = 5.29e-130
Identity = 189/254 (74.41%), Postives = 192/254 (75.59%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  -----------------------------------------SNSAIPYWPQQQQLPVAPS 120
                                                    SNSAIPYWPQQQQ PVAPS
Sbjct: 107 NYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAPS 166

Query: 121 YYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLEN 180
           YYNNM SSDHINPIENLSKFGAQFMEQSVYNNNN NGYGNGYYFPLLQGQSSSQMVDLEN
Sbjct: 167 YYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLEN 226

Query: 181 YDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMTQ 196
           YDMGFDDPRRVLCGFEF+YGDHHNQ+MGTSNSHGYEMGPLISSCPSNYEAMLQDLST TQ
Sbjct: 227 YDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTTQ 286

[Close]

BLAST of Cp4.1LG07g04790 vs. NCBI nr
Match: XP_023521101.1 (transcription factor RAX3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377 bits (969), Expect = 1.09e-129
Identity = 196/285 (68.77%), Postives = 196/285 (68.77%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 107 NYWNTRLKKKLFGKQRKEHQQQQQQQATRRGNALRHHGTMNRSNSWHQATITTCXQATRR 166

Query: 121 ------------SNSAIPYWPQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSV 180
                       SNSAIPYWPQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSV
Sbjct: 167 GNALRHHGTMNKSNSAIPYWPQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSV 226

Query: 181 YNNNNVNGYGNGYYFPLLQGQSSSQMVDLENYDMGFDDPRRVLCGFEFVYGDHHNQLMGT 196
           YNNNNVNGYGNGYYFPLLQGQSSSQMVDLENYDMGFDDPRRVLCGFEFVYGDHHNQLMGT
Sbjct: 227 YNNNNVNGYGNGYYFPLLQGQSSSQMVDLENYDMGFDDPRRVLCGFEFVYGDHHNQLMGT 286

[Close]

BLAST of Cp4.1LG07g04790 vs. NCBI nr
Match: KAG6585725.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376 bits (965), Expect = 1.51e-129
Identity = 189/254 (74.41%), Postives = 192/254 (75.59%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  -----------------------------------------SNSAIPYWPQQQQLPVAPS 120
                                                    SNSAIPYWPQQQQLPVAPS
Sbjct: 107 NYWNTRLKKKLFGKQRKDHHHQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQLPVAPS 166

Query: 121 YYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLEN 180
           YYNNM SSDHINPIENLSKFGAQFMEQSVYNNNN NGYGNGYYFPLLQGQSSSQMVDLEN
Sbjct: 167 YYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLEN 226

Query: 181 YDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMTQ 196
           YDMGFDDPRRVLCGFEF+YGDHHNQ+MGTSNSHGYEMGPLISSCPSNYEAMLQ LST TQ
Sbjct: 227 YDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQGLSTTTQ 286

[Close]

BLAST of Cp4.1LG07g04790 vs. NCBI nr
Match: KAG7020626.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362 bits (929), Expect = 4.26e-124
Identity = 185/256 (72.27%), Postives = 189/256 (73.83%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLYL+IGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLTIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  -------------------------------------------SNSAIPYWPQQQQLPVA 120
                                                      SNSAIPYWPQQQQLPVA
Sbjct: 107 NYWNTRLKKKLFGKQRKDHHQQQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQLPVA 166

Query: 121 PSYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDL 180
           PSYYNNM SSDHINPIENLSKFGAQFMEQSVYNNNN NGY    YFPLLQGQSSSQMVDL
Sbjct: 167 PSYYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGY----YFPLLQGQSSSQMVDL 226

Query: 181 ENYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTM 196
           ENYDMGFDDPRRVLCGFEF+YGDHHNQ+MGTSNSHGYEMGPLISSCPSNYEAMLQDLST 
Sbjct: 227 ENYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTT 286

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL
Match: A0A6J1GJT2 (transcription factor RAX3-like OS=Cucurbita moschata OX=3662 GN=LOC111454503 PE=4 SV=1)

HSP 1 Score: 377 bits (968), Expect = 2.56e-130
Identity = 189/254 (74.41%), Postives = 192/254 (75.59%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  -----------------------------------------SNSAIPYWPQQQQLPVAPS 120
                                                    SNSAIPYWPQQQQ PVAPS
Sbjct: 107 NYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAPS 166

Query: 121 YYNNMPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVDLEN 180
           YYNNM SSDHINPIENLSKFGAQFMEQSVYNNNN NGYGNGYYFPLLQGQSSSQMVDLEN
Sbjct: 167 YYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLEN 226

Query: 181 YDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTMTQ 196
           YDMGFDDPRRVLCGFEF+YGDHHNQ+MGTSNSHGYEMGPLISSCPSNYEAMLQDLST TQ
Sbjct: 227 YDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTTQ 286

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL
Match: A0A6J1KQX4 (transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111496413 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 5.27e-121
Identity = 183/257 (71.21%), Postives = 189/257 (73.54%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLYLSIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  ----------------------------------------SNSAIPYWPQQQQ-LPVAPS 120
                                                   SNS IPYWPQQQQ LPVAPS
Sbjct: 107 NYWNTRLKKKLFGKQRKEQQQQQQASRRGNALRHHGTVNKSNSTIPYWPQQQQQLPVAPS 166

Query: 121 YYNN---MPSSDHINPIENLSKFGAQFMEQSVYNNNNVNGYGNGYYFPLLQGQSSSQMVD 180
           YYNN   M SSDHINPIE LSKFGAQFM++SVYNNN  NGYGN YYFPLLQGQSS+QMVD
Sbjct: 167 YYNNNNNMASSDHINPIEKLSKFGAQFMDESVYNNN-ANGYGNAYYFPLLQGQSSTQMVD 226

Query: 181 LENYDMGFDDPRRVLCGFEFVYGDHHNQLMGTSNSHGYEMGPLISSCPSNYEAMLQDLST 196
           LENYDMGFDDPRRVLCGFEFVYGDHHNQ+MGTSNSHGYEMGPLISSCPSNYEAMLQDLST
Sbjct: 227 LENYDMGFDDPRRVLCGFEFVYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLST 286

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL
Match: A0A6J1K654 (transcription factor RAX3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492028 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.82e-65
Identity = 128/273 (46.89%), Postives = 156/273 (57.14%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLY+SIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 107 NYWNTRLKKKLFGKQRKEHHHQQQATRRGNALKQMQQMKRPSETNNNTTNYGAENNNIAI 166

Query: 121 -----SNSAIPYWPQQQQLPVAPSY-YNNMPSSDHINPIENLSKFGAQFM-EQSVYNNNN 180
                +++ IPYWPQQQQLP+AP Y   ++P+SD INPIENLSKFG Q M E+S Y+N N
Sbjct: 167 FSLNEAHNNIPYWPQQQQLPLAPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSNMN 226

Query: 181 VNGYGNGYYFPLLQGQSSSQMVDLE--NYDM-GFDDPRRVLCGFEFVYGDHHNQLMGTSN 185
            N  G G++ P++QGQSS+QMV++E  NY+M G++DPRRVLCG EF++ DHH Q++GT N
Sbjct: 227 NNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILGT-N 286

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL
Match: A0A6J1K871 (transcription factor RAX3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492028 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.87e-65
Identity = 128/273 (46.89%), Postives = 156/273 (57.14%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLY+SIGSR                 
Sbjct: 48  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIK 107

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 108 NYWNTRLKKKLFGKQRKEHHHQQQATRRGNALKQMQQMKRPSETNNNTTNYGAENNNIAI 167

Query: 121 -----SNSAIPYWPQQQQLPVAPSY-YNNMPSSDHINPIENLSKFGAQFM-EQSVYNNNN 180
                +++ IPYWPQQQQLP+AP Y   ++P+SD INPIENLSKFG Q M E+S Y+N N
Sbjct: 168 FSLNEAHNNIPYWPQQQQLPLAPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSNMN 227

Query: 181 VNGYGNGYYFPLLQGQSSSQMVDLE--NYDM-GFDDPRRVLCGFEFVYGDHHNQLMGTSN 185
            N  G G++ P++QGQSS+QMV++E  NY+M G++DPRRVLCG EF++ DHH Q++GT N
Sbjct: 228 NNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILGT-N 287

[Close]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL
Match: A0A6J1HEB2 (transcription factor RAX3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462761 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 2.07e-64
Identity = 128/273 (46.89%), Postives = 156/273 (57.14%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR----------------- 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+IICSLY+SIGSR                 
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  --------------------------------------------SNSA------------ 120
                                                       +N+A            
Sbjct: 107 NYWNTRLKKKLFGKQRKEHHHQQQATRRGNALKQMQQMKRPLENNNNATNYGAENNNIAI 166

Query: 121 ---------IPYWPQQQQLPVAPSY-YNNMPSSDHINPIENLSKFGAQFM-EQSVYNNNN 180
                    IPYWPQQQQLP+ P Y   ++P+SD INPIENLSKFG Q M E+S Y+N N
Sbjct: 167 FSLNEAHNNIPYWPQQQQLPLGPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSNMN 226

Query: 181 VNGYGNGYYFPLLQGQSSSQMVDLE--NYDM-GFDDPRRVLCGFEFVYGDHHNQLMGTSN 185
            N  G G++ P++QGQSS+QMV++E  NY+M G++DPRRVLCG EF++ DHH Q++GT N
Sbjct: 227 NNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILGT-N 286

[Close]

BLAST of Cp4.1LG07g04790 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-19
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR 44
          LKRCGKSCRLRWLNYLRPNIKHGGFSEEE+ IICSLYL+IGSR
Sbjct: 47 LKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSR 89

[Close]

BLAST of Cp4.1LG07g04790 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-19
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR------------SNSAI 60
           LKRCGKSCRLRWLNYLRPNIKHGGFSEEED+II SLY+SIGSR             N   
Sbjct: 47  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIK 106

Query: 61  PYW-------------PQQQQLPVAPSYYNNMPSSDHINPIENLSKFGAQFMEQSVYNNN 110
            YW                +Q  +  S  NN+ ++++    +NLS    + ++  +   N
Sbjct: 107 NYWNTKLKKKLLGRQKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQN 166

[Close]

BLAST of Cp4.1LG07g04790 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR 44
          L+RCGKSCRLRWLNYLRPNIKHGGFSEEED IIC+LY++IGSR
Sbjct: 47 LRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSR 89

[Close]

BLAST of Cp4.1LG07g04790 vs. TAIR 10
Match: AT4G37780.1 (myb domain protein 87 )

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-18
Identity = 36/43 (83.72%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR 44
          +KRCGKSCRLRWLNYLRPN+KHGGF++EED IICSLY++IGSR
Sbjct: 47 IKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSR 89

[Close]

BLAST of Cp4.1LG07g04790 vs. TAIR 10
Match: AT5G23000.1 (myb domain protein 37 )

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-16
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1   LKRCGKSCRLRWLNYLRPNIKHGGFSEEEDKIICSLYLSIGSR------------SNSAI 60
           L+RCGKSCRLRWLNYLRPNIKHG FSEEED+II SL+ +IGSR             N   
Sbjct: 47  LRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIK 106

Query: 61  PYWPQQQQLPVAPSYYNNMPS---SDHINPI 77
            YW  + +  +  S  ++  S   S ++NPI
Sbjct: 107 NYWNTKLRKKLLSSSSDSSSSAMASPYLNPI 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g04790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Y9	6.0e-18	93.02	Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1	[more]
Q9FKL2	7.8e-18	40.30	Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1	[more]
F4JSU0	8.6e-17	83.72	Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1	[more]
Q9FG68	4.7e-15	49.45	Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1	[more]
Q9SJL7	6.2e-15	46.23	Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1	[more]

BLAST of Cp4.1LG07g04790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538436.1	1.04e-134	76.86	transcription factor RAX3-like [Cucurbita pepo subsp. pepo] >XP_023538441.1 tran...	[more]
XP_022951765.1	5.29e-130	74.41	transcription factor RAX3-like [Cucurbita moschata]	[more]
XP_023521101.1	1.09e-129	68.77	transcription factor RAX3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585725.1	1.51e-129	74.41	Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7020626.1	4.26e-124	72.27	Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG07g04790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJT2	2.56e-130	74.41	transcription factor RAX3-like OS=Cucurbita moschata OX=3662 GN=LOC111454503 PE=...	[more]
A0A6J1KQX4	5.27e-121	71.21	transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111496413 PE=4 ...	[more]
A0A6J1K654	1.82e-65	46.89	transcription factor RAX3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1K871	1.87e-65	46.89	transcription factor RAX3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HEB2	2.07e-64	46.89	transcription factor RAX3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Cp4.1LG07g04790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49690.1	4.2e-19	93.02	myb domain protein 84	[more]
AT5G57620.1	5.5e-19	40.30	myb domain protein 36	[more]
AT5G65790.1	1.6e-18	88.37	myb domain protein 68	[more]
AT4G37780.1	6.1e-18	83.72	myb domain protein 87	[more]
AT5G23000.1	3.4e-16	49.45	myb domain protein 37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 3..31 e-value: 5.9E-5 score: 23.2
None	No IPR available	GENE3D	1.10.10.60		coord: 1..21 e-value: 4.8E-6 score: 28.5
None	No IPR available	PANTHER	PTHR48000:SF14	TRANSCRIPTION FACTOR MYB36-LIKE	coord: 1..44
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 1..44
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..20 score: 13.299262
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 3..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g04790.1	Cp4.1LG07g04790.1	mRNA