Cp4.1LG07g04350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g04350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Zinc finger and BTB domain-containing protein 47
Location	Cp4.1LG07: 2746312 .. 2749038 (+)
RNA-Seq Expression	Cp4.1LG07g04350
Synteny	Cp4.1LG07g04350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTTTTCCTTCTCTTATTGCAAAAAATATCGCTTTTAGGATGAAAATTTGTTCCTGCTCCATGAAAAGAGGATTCTGCAGTGCAATTTGTATCTCTGGTAAAATTTGCTTCCCTCTAAACCATTTGATTGCTTTGAGCTTTATGTTCTAACTTTTGCCTCAAACTGTTTCTCTATATCTGTTTTATGTTTTAGAGATGACATTTTTTCCCCTTTTTTTTTAGTCTTAACTCGAACGCCATGGATTCAATGAAAATAGCGTTATATTACATGGGTATTTCAATCGAAATACCGGAAGGGGGTGGTAGTTCTTTTTCTCGTTCTTGAAGTGATTCAAATTGAATGATGAATCCATTTCTTCGCCTCTTTGCCAATAAATCAGAATTATCGTGGAAAATAGCATATTGATCCTACGTAGGATTGGATTAAGTATAGCAGGATCTGTGATATTAGATTGACTCTACATAGATTTGAATTAAGTTCTAAATAATTTCATTTTTACCCGAGAGATCCAGACCATAAATTTTTTGTCTCCCTCTTTCAAATCTATATTTGGTAGCAAAATTAGAAATTAGATTTCCATTTAAACAATGGGTCATAATGTATTTTATAATATATTTATAAACCATATATTATAATAATCATTTTACTTTATCATCTAGCTTATAATATATAAAGTTATTTATTTATTTATTTTAGAATGACATTTGATGTTATATAGTTTTGGAGTATTATGAAGGTCAATTGCTTGCACCTTGATTATCAATTTTTTAATAAAAGAATTTGAAAATGAAAATCAAATTGACCTTTTCTTTTACCAAATCAAATTTGACTCTGATTGATAAGACTAAAAGATAATGAAAAGTAATTAAAATTGTTTGATATTTTCATTATTTTGGTTTGAAAAAAAAAAAAGTCTATTTTGTTTATTTTATTAATGATTGATTTTTAAGCGATTAATCTTTTTTTAATATTTTTAAAAGTTGATGAATAATTTTTAAATTTGTTTTAAAAATGAAGTACAAAATTTAAAGATATTTAATTGAGAATAATTATGTTGTTCGGTTAATTTAATTGGAATTTTTTATTTAAATTCGATTTTAGTTCATGAATTTTCTTGTTTATTCATCTATCGACTTTAATTGGTGGACGATATAGTTGGTAAGAATTAGGTTTGTAAGTGAGTTTATATTTTGTTAAATAATTGATTAGAAAAATTAGGTTATAATTAAAATATGTTTAATTCAAGTTTAGACATTAAAACATTATTATAAAATTTGTTTTATTAAACTTTAATTTATTTTATTTATCCCTAGAAATATAATAATGCCATTGGATTTAACTTTTAGGTACTTAATTTTCTTTCAAAATAATCATTTTAATAACAAATAAAAATTGTGAGTTTGCAATTAAAAAAAAAAAAAAAAAAACTCAAAATAGTCATGTTTGTTTAAGAGTGTTGCTTATGGCTGCATGTTAGATGTCTCGGTCAAGCTTGTCTAAGACGTGTTGTCCATGGTCGTATACCCATTCCAAGTCCCATTTTACATGTTTTCATTTTAGATAAGCATTTACTATTTCATGTTGTGTCAATATGAGAGTGTATGACCAGTCACCAAAATCATGTCTATACACGTCAGGGCTATTTAAAACATTTGTTTCTCGAGGTTCGAGCATCGTTGATATTGTTTGTGAAGTGCAAATTCTCACTATAACAAGAGTGCGATTGTGACACTGTGTACAACCATAGTTAGCGACCGTCTCAAGTGACAATAACCTTAAAAAAACGAGCAACTCTTTTGACGACCATCGTATGACCAAACTCTTGTTGTTGACCGTTCATAGCGATTTAAATACACGTCGTGGTTTATAATAATTTGACATTAATACCCCTTTCAATTCCAATTTCAACTCATAATCATCTCTTTTGCTTTTTGTGGGCCTCTTCAAAGCAATCGCAATCCGCCTCCCTTCCCCTGTTCTTGGTGTTCTTCCTCTTCTTCTTCAACTTTTCCCTTACCCCTTTTTTTGCTGTTTATTTGATGGGAAAGAAAAAAACCCAGAAAACCAAGCAGATTTCAGTCGCCATAGCTGAAATCTCCACCTCCAAATTACCCGATGACGGCGGCGGCCACGGCGGCGGTCAATCTGTACAGCCCAGAAAGAGAGGCCGGCCTCGTAAAGTTCTCGATGAGCCACCGGATGACAAGAAACTACTACCGCCGCCGCCGGCGGATGTTGCGGATAAACCGCTGCAGAAGAAGGGTAAATCCACCGGAGATGAGCCGCCGATTTCCATGGAAGGAGCTTCGAAGCAACATGAATCGGAAGAACCCAAATCAGGAGATGGATCGAGAAGCAGAGGAAGGAGGAAGAACAAACCCAGAAAAAGTAGCTAACGGAGCAATCGATTTGATGGGTTTTCAGTATTGGTTTTGGATTTTGTTAATTTGTTGATCTTTGTTCTTGAAAAATTACCCAAAAATCACCGTTGATACCATTTGTGATTGATGTATCTATCCGTTGTAGATTGAAAAAATTTGACGCTATGCGATTCGGGTTCGGGATGGTATCATGCTACTCACTAGCACGGACTTGTTTTTCTTTTTAGGTCATTTAAGAGACGAACGGGATTAGATACCCTGATAGTCGTTGTTGTAAATAACTAGTGTTCACCATTGGTCATAGTATTTATTCTCGTTCTGCTCTTGGAATCACTCTGTT

mRNA sequence

ATGACGAAAAAAACCCAGAAAACCAAGCAGATTTCAGTCGCCATAGCTGAAATCTCCACCTCCAAATTACCCGATGACGGCGGCGGCCACGGCGGCGGTCAATCTGTACAGCCCAGAAAGAGAGGCCGGCCTCGTAAAGTTCTCGATGAGCCACCGGATGACAAGAAACTACTACCGCCGCCGCCGGCGGATGTTGCGGATAAACCGCTGCAGAAGAAGGGTAAATCCACCGGAGATGAGCCGCCGATTTCCATGGAAGGAGCTTCGAAGCAACATGAATCGGAAGAACCCAAATCAGGAGATGGATCGAGAAGCAGAGGAAGGAGGAAGAACAAACCCAGAAAAAGTAGCTAACGGAGCAATCGATTTGATGGGTTTTCAGTATTGGTTTTGGATTTTGTTAATTTGTTGATCTTTGTTCTTGAAAAATTACCCAAAAATCACCGTTGATACCATTTGTGATTGATGTATCTATCCGTTGTAGATTGAAAAAATTTGACGCTATGCGATTCGGGTTCGGGATGGTATCATGCTACTCACTAGCACGGACTTGTTTTTCTTTTTAGGTCATTTAAGAGACGAACGGGATTAGATACCCTGATAGTCGTTGTTGTAAATAACTAGTGTTCACCATTGGTCATAGTATTTATTCTCGTTCTGCTCTTGGAATCACTCTGTT

Coding sequence (CDS)

ATGACGAAAAAAACCCAGAAAACCAAGCAGATTTCAGTCGCCATAGCTGAAATCTCCACCTCCAAATTACCCGATGACGGCGGCGGCCACGGCGGCGGTCAATCTGTACAGCCCAGAAAGAGAGGCCGGCCTCGTAAAGTTCTCGATGAGCCACCGGATGACAAGAAACTACTACCGCCGCCGCCGGCGGATGTTGCGGATAAACCGCTGCAGAAGAAGGGTAAATCCACCGGAGATGAGCCGCCGATTTCCATGGAAGGAGCTTCGAAGCAACATGAATCGGAAGAACCCAAATCAGGAGATGGATCGAGAAGCAGAGGAAGGAGGAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MTKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPPADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS

Homology

[Close]

BLAST of Cp4.1LG07g04350 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (544), Expect = 1.67e-69
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
           KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP
Sbjct: 4   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 63

Query: 63  ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS
Sbjct: 64  ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 118

[Close]

BLAST of Cp4.1LG07g04350 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 202 bits (514), Expect = 1.77e-64
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
           KKTQKTKQISVAIAE STSKLPDDGGGHGGGQS QPRKRGRPRKVLDEPPDDKKLLPPP 
Sbjct: 36  KKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDKKLLPPPA 95

Query: 63  ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           ADVADKPLQKKGK+TGDEPPISMEGASKQ ESEEPKSGDGSRSRGRRKNKPRKSS
Sbjct: 96  ADVADKPLQKKGKTTGDEPPISMEGASKQQESEEPKSGDGSRSRGRRKNKPRKSS 150

[Close]

BLAST of Cp4.1LG07g04350 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (509), Expect = 3.51e-64
Identity = 111/115 (96.52%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
           KKTQKTKQISVAIAE STSKLPDDGG HGGGQSVQPRKRGRPRKVLDEPPDDKKL PPPP
Sbjct: 4   KKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKL-PPPP 63

Query: 63  ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           ADVADKPLQKKGKSTGDEPP SMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS
Sbjct: 64  ADVADKPLQKKGKSTGDEPPDSMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117

[Close]

BLAST of Cp4.1LG07g04350 vs. NCBI nr
Match: KAG6585603.1 (hypothetical protein SDJN03_18336, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 2.19e-36
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 3  KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
          KKTQKTKQISVAIAE STSKLPDDGG HGGGQSVQPRKRGRPRKVLDEPPDDKKL PPPP
Sbjct: 4  KKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKL-PPPP 63

Query: 63 ADVADKPLQKKG 74
          ADVADKPLQKKG
Sbjct: 64 ADVADKPLQKKG 74

[Close]

BLAST of Cp4.1LG07g04350 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 118 bits (295), Expect = 1.25e-31
Identity = 81/119 (68.07%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPP---DDKKLLP 62
           KK QKTK+I+VAIAE S SKL DDG G    QS+QPRKRGRPRKVLDEP    ++KKLLP
Sbjct: 4   KKPQKTKEIAVAIAETSASKLADDGIG----QSIQPRKRGRPRKVLDEPQNKQENKKLLP 63

Query: 63  PPPADVADKPLQKKGKSTGDEPPI-SMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           P P +VA+ P +KK K+T D+PP  SME  SKQ E   PK+GDGSRSRGRRKNKPRKSS
Sbjct: 64  PLP-EVAENPPEKKAKTTVDQPPPGSMEEGSKQGE---PKTGDGSRSRGRRKNKPRKSS 114

[Close]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 8.59e-65
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
           KKTQKTKQISVAIAE STSKLPDDGGGHGGGQS QPRKRGRPRKVLDEPPDDKKLLPPP 
Sbjct: 36  KKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDKKLLPPPA 95

Query: 63  ADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           ADVADKPLQKKGK+TGDEPPISMEGASKQ ESEEPKSGDGSRSRGRRKNKPRKSS
Sbjct: 96  ADVADKPLQKKGKTTGDEPPISMEGASKQQESEEPKSGDGSRSRGRRKNKPRKSS 150

[Close]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 2.68e-31
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDD---KKLLP 62
           KKTQKTK+I+VAIAE STSKL DDG G    QS+QPRKRGRPRKVLDE  ++   KKL P
Sbjct: 4   KKTQKTKEIAVAIAETSTSKLADDGIG----QSIQPRKRGRPRKVLDEQQNEQENKKLPP 63

Query: 63  PPPA--DVADKPLQKKGKSTGDEPPI-SMEGASKQHESEEPKSGDGSRSRGRRKNKPRKS 117
           PPP   +V + P +KK K+T DEPP  S++  SKQ   EEPK+GDGSRSRGRRKNKPRKS
Sbjct: 64  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQ---EEPKTGDGSRSRGRRKNKPRKS 117

[Close]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 6.40e-27
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 3   KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDK--KLLPP 62
           KKTQKTK+I+VAIAE STSKL DDG     GQ +QPRKRGRPRKVL+E  +++  K  PP
Sbjct: 4   KKTQKTKEIAVAIAETSTSKLADDGII---GQPIQPRKRGRPRKVLEEQQNEQESKKPPP 63

Query: 63  PPADVADKPLQKKGKSTGDEPPI-SMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117
           P  +VA+ P +KK K T DE  + SM   SK+   EEPK+GDGSRSRGRRKNKPRKSS
Sbjct: 64  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKE---EEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL
Match: A0A067L321 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04424 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.75e-05
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 1   MTKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPP 60
           M KK QKTK+ISVAIAE S++      G     Q+  PRKRGRPRK + E  +  +    
Sbjct: 1   MGKKPQKTKEISVAIAEASST------GDETQQQAQAPRKRGRPRKTITEKIETHEDKKE 60

Query: 61  PPADVADKPLQKKGKSTGDE---------PPISMEGASKQHESEEPKSGDGSRSRGRRKN 117
            P    ++   KK KS+  E         PP S  G  K+ E  E ++    RSR RRK+
Sbjct: 61  EPQQQVNENQSKKAKSSFTEEEKQVEVEGPPASTRGKKKEEEKSE-ETEPPRRSR-RRKS 118

[Close]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL
Match: A0A7J7CZZ5 (Zinc finger and BTB domain-containing protein 47 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00591 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.99e-04
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 3  KKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLPPPP 62
          KK QKTK++SVAIAE S++            QS  PRKRGRPRK++++   +++   P  
Sbjct: 4  KKPQKTKELSVAIAEASSTGEETQ---QAESQSQTPRKRGRPRKIVEKTELEEQKEEPAA 63

Query: 63 ADVADKPLQKKGKSTGDEPP 82
           +V +    KK KS+ ++PP
Sbjct: 64 QEVEESSHSKKPKSSDEQPP 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g04350 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g04350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537340.1	1.67e-69	100.00	uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo]	[more]
XP_023002541.1	1.77e-64	95.65	uncharacterized protein LOC111496353 [Cucurbita maxima]	[more]
KAG7020516.1	3.51e-64	96.52	hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6585603.1	2.19e-36	95.83	hypothetical protein SDJN03_18336, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038884964.1	1.25e-31	68.07	uncharacterized protein LOC120075548 [Benincasa hispida]	[more]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLK8	8.59e-65	95.65	uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353...	[more]
A0A5A7VIE6	2.68e-31	66.94	Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRH2	6.40e-27	63.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1	[more]
A0A067L321	8.75e-05	41.27	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04424 PE=4 SV=1	[more]
A0A7J7CZZ5	1.99e-04	40.00	Zinc finger and BTB domain-containing protein 47 OS=Tripterygium wilfordii OX=45...	[more]

BLAST of Cp4.1LG07g04350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	PANTHER	PTHR37615	NUCLEOPORIN NUP159-LIKE	coord: 3..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g04350.1	Cp4.1LG07g04350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane