Cp4.1LG07g04060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g04060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein RADIALIS-like 4
Location	Cp4.1LG07: 2704745 .. 2705026 (+)
RNA-Seq Expression	Cp4.1LG07g04060
Synteny	Cp4.1LG07g04060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAGTTTGAGGATGCTCTGGCTTTTTACCCTGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCTGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAA

mRNA sequence

ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAGTTTGAGGATGCTCTGGCTTTTTACCCTGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCTGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAA

Coding sequence (CDS)

ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAGTTTGAGGATGCTCTGGCTTTTTACCCTGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCTGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAA

Protein sequence

MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

Homology

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-24
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 8  SSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
          SS SSSS+WT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68 IESGKVPLPKYKPI 82
          IE   VPLPKYK +
Sbjct: 64 IEQDLVPLPKYKTV 77

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-24
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1  MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV DL++IE+G+VPLP YK   SNS
Sbjct: 61 LVEDLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 53/85 (62.35%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS +  S GS S  WT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1  MASGSMSSYGSGS--WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV D+  IE+G VP P YK    NS
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SSS++WT K+NK FE ALA Y +DTPDRW  VARAVGGK+AEEV+RHY++
Sbjct: 1  MASN----SMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYEL 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASN 85
          L+ D+  IESG+ P P Y+   +N
Sbjct: 61 LIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS++   S  SS +WT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1  MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LVHDLMHIESGKVPLPKYK 80
          LV D+  IE+G VP P Y+
Sbjct: 61 LVQDINSIENGHVPFPNYR 77

[Close]

BLAST of Cp4.1LG07g04060 vs. NCBI nr
Match: XP_023538249.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (487), Expect = 1.77e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. NCBI nr
Match: KAG6585593.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190 bits (483), Expect = 5.63e-61
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. NCBI nr
Match: XP_023002562.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 190 bits (483), Expect = 7.23e-61
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. NCBI nr
Match: XP_022951683.1 (protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190 bits (483), Expect = 7.23e-61
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (418), Expect = 5.96e-51
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LV DLMHIESGK+PLP YKPI SN  V GDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL
Match: A0A6J1KJV3 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 3.50e-61
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL
Match: A0A6J1GIE7 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 3.50e-61
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 2.89e-51
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LV DLMHIESGK+PLP YKPI SN  V GDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 2.89e-51
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          LV DLMHIESGK+PLP YKPI SN  V GDEQR
Sbjct: 61 LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 2.97e-47
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS++F+SSG+SSS+WT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93
          L+ DLMHIESGKVPLP YKP+  N  +  DEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Cp4.1LG07g04060 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-25
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 8  SSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
          SS SSSS+WT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4  SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68 IESGKVPLPKYKPI 82
          IE   VPLPKYK +
Sbjct: 64 IEQDLVPLPKYKTV 77

[Close]

BLAST of Cp4.1LG07g04060 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-25
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1  MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV DL++IE+G+VPLP YK   SNS
Sbjct: 61 LVEDLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Cp4.1LG07g04060 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-25
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1  MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV DL++IE+G+VPLP YK   SNS
Sbjct: 61 LVEDLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Cp4.1LG07g04060 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 53/85 (62.35%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS +  S GS S  WT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1  MASGSMSSYGSGS--WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV D+  IE+G VP P YK    NS
Sbjct: 61 LVRDIESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Cp4.1LG07g04060 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 9.7e-22
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MAS++   S  SS +WT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1  MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61 LVHDLMHIESGKVPLPKYK 80
          LV D+  IE+G VP P Y+
Sbjct: 61 LVQDINSIENGHVPFPNYR 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g04060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	3.5e-24	74.32	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1A173	4.5e-24	68.24	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q9SIJ5	1.6e-21	62.35	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	1.0e-20	59.52	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
F4JVB8	1.4e-20	60.76	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g04060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538249.1	1.77e-61	100.00	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]
KAG6585593.1	5.63e-61	98.92	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023002562.1	7.23e-61	98.92	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_022951683.1	7.23e-61	98.92	protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like...	[more]
XP_022961874.1	5.96e-51	84.95	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of Cp4.1LG07g04060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJV3	3.50e-61	98.92	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1	[more]
A0A6J1GIE7	3.50e-61	98.92	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1	[more]
A0A6J1K2Q1	2.89e-51	84.95	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	2.89e-51	84.95	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A5A7VC75	2.97e-47	79.57	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cp4.1LG07g04060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	2.5e-25	74.32	RAD-like 5	[more]
AT1G75250.1	3.2e-25	68.24	RAD-like 6	[more]
AT1G75250.2	3.2e-25	68.24	RAD-like 6	[more]
AT2G21650.1	1.1e-22	62.35	Homeodomain-like superfamily protein	[more]
AT4G39250.1	9.7e-22	60.76	RAD-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.8E-8 score: 43.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.341778
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..58 e-value: 1.38206E-7 score: 42.1774
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 4.6E-24 score: 86.0
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..79
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 5.4E-7 score: 29.7
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g04060.1	Cp4.1LG07g04060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity