Cp4.1LG07g03910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g03910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG07: 2479147 .. 2480550 (-)
RNA-Seq Expression	Cp4.1LG07g03910
Synteny	Cp4.1LG07g03910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAATGCCATAGATGTCCGAGTTTTGGCAAACCGTTACGCCGCACAATTGCAACTCTGTTGCCCACAAAATCCCTCTTCATTTTCACTTGCTCGGACTGTTCATGCCCACATGATTGTTTCGGGATTCAAGCCTCGTGGCCATCTTGTCAATCGTCTGCTTGATATATACTGGAAATCGTCTAATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTCCCAATCCAGATGCTGTAGCCAGGACTACATTGATTACGGCATACTCTAACTTGGGAAATTTGAATATGGCTCGAGAAATATTCAATGGAACTCCATTGAATATGAGGGATACTATTTTCTATAATGCAATGATTACTGGGTTTTCGCATAACGTTGATGGTCATTCTGCTATTGGACTGTTTCATGCTATGAGACGAAGCAATTTTCGGCCTGACGACTTTACATTTACAAGCGTGCTCAGTGCTTTAGCGCTTATTGTTGATAATGAGCAGCAGTGTGGCCAAATGCACGGTGCGGTGGTGAAATCTGGAACTGGGCTTGTTTCTTCAGTGTTGAATGCTCTTCTATCTGTTTATGTTAAATGTGCTTCTTCGCCGTTGGTGTCATCTTCGTCACTGATGGCATCAGCTAGGAAACTGTTTGATGAAATGCCACAAAGGGATGAGTTAACATGGACAACATTGATTACTGGGTATGTGCGGAACGATGATTTGAATGGCGCTCGTGAACTTCTTGACACGATGACTGAAAAGCTCGGGGTAGCTTGGAATGCAATGATCTCTGGATATGTGCATCATGGTCTTTTCGAGGATGCCTTGACACTGTTTAGGAAAATGCGTTTTCTTGGTGTCGAGCTCGATGAGTTCACCTATACGAGTGTAATCAGTGCTTGTGCCAACGGTGGTTTTTTTCAACTGGGAAAAGAGTTGCATGCTTACATTCTTAAAAATGAGCTGAACCCAAATCATGATTTTTTATTGTCTGTGAGTAATTCATTGATTACTTTGTACTGGAAATATGGTAAAGTTGATGGGGCTCGGCACATTTTTTATGAGATGCCTGTTAAAGATATTGTTTCTTGGAATGCAATCTTATCAGGGTATGTCAATGCAGGGCGTATGGAAGAAGCAAAGTCTTTCTTTGCTCAAATGCCAGAGAAAAGCCTTCTTACATGGACTGTAATGATTTCAGGATTAGCTCAAAATGGATTTGGAGAAGAGGGTTTGAATCTGTTTAACCGCATGAGGTTAGATGGTTATGAACCCTGTGATTATGCCTTTGCAGGAGCAATTACAGCTTGTTCTGTGCTTGGATCATTGGAGAATGGCCGCCAGCTCCATGCTCAGCTTATCCATCTTGGCCATGATTCAAGCCTCTCAATTGGCAATGCAATGATCTCA

mRNA sequence

ATGAGAAATGCCATAGATGTCCGAGTTTTGGCAAACCGTTACGCCGCACAATTGCAACTCTGTTGCCCACAAAATCCCTCTTCATTTTCACTTGCTCGGACTGTTCATGCCCACATGATTGTTTCGGGATTCAAGCCTCGTGGCCATCTTGTCAATCGTCTGCTTGATATATACTGGAAATCGTCTAATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTCCCAATCCAGATGCTGTAGCCAGGACTACATTGATTACGGCATACTCTAACTTGGGAAATTTGAATATGGCTCGAGAAATATTCAATGGAACTCCATTGAATATGAGGGATACTATTTTCTATAATGCAATGATTACTGGGTTTTCGCATAACGTTGATGGTCATTCTGCTATTGGACTGTTTCATGCTATGAGACGAAGCAATTTTCGGCCTGACGACTTTACATTTACAAGCGTGCTCAGTGCTTTAGCGCTTATTGTTGATAATGAGCAGCAGTGTGGCCAAATGCACGGTGCGGTGGTGAAATCTGGAACTGGGCTTGTTTCTTCAGTGTTGAATGCTCTTCTATCTGTTTATGTTAAATGTGCTTCTTCGCCGTTGGTGTCATCTTCGTCACTGATGGCATCAGCTAGGAAACTGTTTGATGAAATGCCACAAAGGGATGAGTTAACATGGACAACATTGATTACTGGGTATGTGCGGAACGATGATTTGAATGGCGCTCGTGAACTTCTTGACACGATGACTGAAAAGCTCGGGGTAGCTTGGAATGCAATGATCTCTGGATATGTGCATCATGGTCTTTTCGAGGATGCCTTGACACTGTTTAGGAAAATGCGTTTTCTTGGTGTCGAGCTCGATGAGTTCACCTATACGAGTGTAATCAGTGCTTGTGCCAACGGTGGATTAGCTCAAAATGGATTTGGAGAAGAGGGTTTGAATCTGTTTAACCGCATGAGGTTAGATGGTTATGAACCCTGTGATTATGCCTTTGCAGGAGCAATTACAGCTTGTTCTGTGCTTGGATCATTGGAGAATGGCCGCCAGCTCCATGCTCAGCTTATCCATCTTGGCCATGATTCAAGCCTCTCAATTGGCAATGCAATGATCTCA

Coding sequence (CDS)

ATGAGAAATGCCATAGATGTCCGAGTTTTGGCAAACCGTTACGCCGCACAATTGCAACTCTGTTGCCCACAAAATCCCTCTTCATTTTCACTTGCTCGGACTGTTCATGCCCACATGATTGTTTCGGGATTCAAGCCTCGTGGCCATCTTGTCAATCGTCTGCTTGATATATACTGGAAATCGTCTAATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTCCCAATCCAGATGCTGTAGCCAGGACTACATTGATTACGGCATACTCTAACTTGGGAAATTTGAATATGGCTCGAGAAATATTCAATGGAACTCCATTGAATATGAGGGATACTATTTTCTATAATGCAATGATTACTGGGTTTTCGCATAACGTTGATGGTCATTCTGCTATTGGACTGTTTCATGCTATGAGACGAAGCAATTTTCGGCCTGACGACTTTACATTTACAAGCGTGCTCAGTGCTTTAGCGCTTATTGTTGATAATGAGCAGCAGTGTGGCCAAATGCACGGTGCGGTGGTGAAATCTGGAACTGGGCTTGTTTCTTCAGTGTTGAATGCTCTTCTATCTGTTTATGTTAAATGTGCTTCTTCGCCGTTGGTGTCATCTTCGTCACTGATGGCATCAGCTAGGAAACTGTTTGATGAAATGCCACAAAGGGATGAGTTAACATGGACAACATTGATTACTGGGTATGTGCGGAACGATGATTTGAATGGCGCTCGTGAACTTCTTGACACGATGACTGAAAAGCTCGGGGTAGCTTGGAATGCAATGATCTCTGGATATGTGCATCATGGTCTTTTCGAGGATGCCTTGACACTGTTTAGGAAAATGCGTTTTCTTGGTGTCGAGCTCGATGAGTTCACCTATACGAGTGTAATCAGTGCTTGTGCCAACGGTGGATTAGCTCAAAATGGATTTGGAGAAGAGGGTTTGAATCTGTTTAACCGCATGAGGTTAGATGGTTATGAACCCTGTGATTATGCCTTTGCAGGAGCAATTACAGCTTGTTCTGTGCTTGGATCATTGGAGAATGGCCGCCAGCTCCATGCTCAGCTTATCCATCTTGGCCATGATTCAAGCCTCTCAATTGGCAATGCAATGATCTCA

Protein sequence

MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWKSSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTGLVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIHLGHDSSLSIGNAMIS

Homology

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BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 7.4e-110
Identity = 212/458 (46.29%), Postives = 279/458 (60.92%), Query Frame = 0


Query: 7   VRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWKSSNLVY 66
           VR +ANRYAA L+LC P   +S  LAR VH ++I  GF+PR H++NRL+D+Y KSS L Y
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67

Query: 67  ARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNV 126
           ARQLFDEI  PD +ARTT+++ Y   G++ +AR +F   P+ MRDT+ YNAMITGFSHN 
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNN 127

Query: 127 DGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTGLVSSVL 186
           DG+SAI LF  M+   F+PD+FTF SVL+ LAL+ D+E+QC Q H A +KSG G ++SV 
Sbjct: 128 DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVS 187

Query: 187 NALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGARELL 246
           NAL+SVY KCASSP     SL+ SARK+FDE+ ++DE +WTT++TGYV+N   +   ELL
Sbjct: 188 NALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 247

Query: 247 DTMTEKLG-VAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACAN---- 306
           + M + +  VA+NAMISGYV+ G +++AL + R+M   G+ELDEFTY SVI ACA     
Sbjct: 248 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 307

Query: 307 ------------------------------------------------------------ 366
                                                                       
Sbjct: 308 QLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 367

Query: 367 ---------------------------GGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAG 373
                                       GLA+NGFGEEGL LF+ M+ +G+EPCDYAF+G
Sbjct: 368 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 427

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BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot
Match: Q9SKQ4 (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-37
Identity = 108/343 (31.49%), Postives = 177/343 (51.60%), Query Frame = 0


Query: 7   VRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFK-PRGHLVNRLLDIYWKSSNLV 66
           +R+  +  A+ LQ C   +  S    + +H H+ ++GFK P   L N L+ +Y K    +
Sbjct: 42  IRLPFDLLASLLQQC--GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPI 101

Query: 67  YARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHN 126
            A ++FD++   +  +   +++ Y   G L  AR +F+  P   RD + +N M+ G++ +
Sbjct: 102 DACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP--ERDVVSWNTMVIGYAQD 161

Query: 127 VDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCG-QMHGAVVKSGTGLVSS 186
            + H A+  +   RRS  + ++F+F  +L+  A +   + Q   Q HG V+ +G  L + 
Sbjct: 162 GNLHEALWFYKEFRRSGIKFNEFSFAGLLT--ACVKSRQLQLNRQAHGQVLVAGF-LSNV 221

Query: 187 VLN-ALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGAR 246
           VL+ +++  Y KC           M SA++ FDEM  +D   WTTLI+GY +  D+  A 
Sbjct: 222 VLSCSIIDAYAKCGQ---------MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAE 281

Query: 247 ELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGG 306
           +L   M EK  V+W A+I+GYV  G    AL LFRKM  LGV+ ++FT++S +  CA+  
Sbjct: 282 KLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL--CASAS 341

Query: 307 LAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLE 347
           +A    G+E   +   M      P     +  I   S  GSLE
Sbjct: 342 IASLRHGKE---IHGYMIRTNVRPNAIVISSLIDMYSKSGSLE 363

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BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot
Match: Q9FXH1 (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX=3702 GN=DYW7 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.3e-33
Identity = 95/314 (30.25%), Postives = 151/314 (48.09%), Query Frame = 0


Query: 64  LVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFS 123
           +++AR  F     PD    T L++ Y+  G +  AR++F+   +  R+   ++AMI  +S
Sbjct: 102 ILHAR--FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDS--MRERNLFTWSAMIGAYS 161

Query: 124 HNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQ-MHGAVVKSGTGLV 183
                     LF  M +    PDDF F  +L   A   D E   G+ +H  V+K G    
Sbjct: 162 RENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVE--AGKVIHSVVIKLGMSSC 221

Query: 184 SSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGA 243
             V N++L+VY KC           +  A K F  M +RD + W +++  Y +N     A
Sbjct: 222 LRVSNSILAVYAKCGE---------LDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEA 281

Query: 244 RELLDTMTEKLG-----VAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVIS 303
            EL+  M EK G     V WN +I GY   G  + A+ L +KM   G+  D FT+T++IS
Sbjct: 282 VELVKEM-EKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMIS 341

Query: 304 ACANGGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIH 363
                GL  NG   + L++F +M L G  P       A++ACS L  +  G ++H+  + 
Sbjct: 342 -----GLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVK 394

Query: 364 LGHDSSLSIGNAMI 372
           +G    + +GN+++
Sbjct: 402 MGFIDDVLVGNSLV 394

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BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-32
Identity = 114/395 (28.86%), Postives = 179/395 (45.32%), Query Frame = 0


Query: 25  NPSSFSLARTVHAHMIVSGFK--PRGHLV--NRLLDIYWKSSNLVYARQLFDEIPNPDAV 84
           N +  S  RT   +  +  FK  PR   V  N ++  Y ++     AR+LFDE+P  D V
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127

Query: 85  ARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNVDGHSAIGLFHAMRR 144
           +   +I  Y    NL  ARE+F   P   RD   +N M++G++ N     A  +F  M  
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE 187

Query: 145 SNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTGLVSSVLNALLSVYVKCAS-- 204
            N    D ++ ++LSA       E+ C      + KS         N LL  +VK     
Sbjct: 188 KN----DVSWNALLSAYVQNSKMEEAC-----MLFKSRENWALVSWNCLLGGFVKKKKIV 247

Query: 205 -----------SPLVSSSSLMA---------SARKLFDEMPQRDELTWTTLITGYVRNDD 264
                        +VS ++++           AR+LFDE P +D  TWT +++GY++N  
Sbjct: 248 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 307

Query: 265 LNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLF-----RKMRFLGVELDEFTYT 324
           +  AREL D M E+  V+WNAM++GYV     E A  LF     R +      +  +   
Sbjct: 308 VEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQC 367

Query: 325 SVISACAN-----------------GGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAI 372
             IS   N                  G +Q+G   E L LF +M  +G      +F+ A+
Sbjct: 368 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSAL 427

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 102/385 (26.49%), Postives = 171/385 (44.42%), Query Frame = 0


Query: 33  RTVHAHMIVSGFKPRGHLVNRLLDIYWKSSNLVYARQLFDEIPNPDAVARTTLITAYSNL 92
           + VH+ ++  G +    + N LL++Y K  + + A+ +FD +   D  +   +I  +  +
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQV 225

Query: 93  GNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNVDGHSAIGLFHAM-RRSNFRPDDFTFT 152
           G +++A   F    +  RD + +N+MI+GF+       A+ +F  M R S   PD FT  
Sbjct: 226 GQMDLAMAQFE--QMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 285

Query: 153 SVLSALALIVDNEQQC--GQMHGAVVKSGTGLVSSVLNALLSVYVKCASSPLVSSSSLMA 212
           SVLSA A +   E+ C   Q+H  +V +G  +   VLNAL+S+Y +C           + 
Sbjct: 286 SVLSACANL---EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG---------VE 345

Query: 213 SARKLFDEMPQRDELT--WTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHH 272
           +AR+L ++   +D     +T L+ GY++  D+N A+ +  ++ ++  VAW AMI GY  H
Sbjct: 346 TARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQH 405

Query: 273 GLFEDALTLFRKMRFLGVELDEFTYTSVISAC---------------------------- 332
           G + +A+ LFR M   G   + +T  +++S                              
Sbjct: 406 GSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS 465

Query: 333 -------ANGG---------------------------LAQNGFGEEGLNLFNRMRLDGY 351
                  A  G                           LAQ+G  EE L LF  M ++G 
Sbjct: 466 NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 525

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BLAST of Cp4.1LG07g03910 vs. NCBI nr
Match: XP_023537093.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 714 bits (1842), Expect = 8.97e-253
Identity = 372/437 (85.13%), Postives = 372/437 (85.13%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK
Sbjct: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGRMEEAKSFFAQMPEKSLL 360

Query: 361 --------LAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQL 372
                   LAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQL
Sbjct: 361 TWTVMISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQL 420

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BLAST of Cp4.1LG07g03910 vs. NCBI nr
Match: XP_022951057.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata])

HSP 1 Score: 702 bits (1811), Expect = 1.29e-247
Identity = 372/468 (79.49%), Postives = 372/468 (79.49%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK
Sbjct: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARHIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. NCBI nr
Match: KAG7020472.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 697 bits (1798), Expect = 1.21e-245
Identity = 369/468 (78.85%), Postives = 371/468 (79.27%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK
Sbjct: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLV+ARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVHARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMR +GVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRLIGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARHIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. NCBI nr
Match: KAG6585558.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 697 bits (1798), Expect = 1.21e-245
Identity = 369/468 (78.85%), Postives = 371/468 (79.27%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK
Sbjct: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLV+ARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVHARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMR +GVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRLIGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARHIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. NCBI nr
Match: XP_023002238.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima])

HSP 1 Score: 690 bits (1780), Expect = 6.48e-243
Identity = 367/468 (78.42%), Postives = 368/468 (78.63%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRN IDVRVLANRYAAQLQLCCPQN SSFSLARTVHAHMIVSGFK RGHLVNRLLDIYWK
Sbjct: 1   MRNVIDVRVLANRYAAQLQLCCPQNSSSFSLARTVHAHMIVSGFKLRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFN TPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNRTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARNIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL
Match: A0A6J1GGL5 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata OX=3662 GN=LOC111454019 PE=3 SV=1)

HSP 1 Score: 702 bits (1811), Expect = 6.24e-248
Identity = 372/468 (79.49%), Postives = 372/468 (79.49%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK
Sbjct: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARHIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL
Match: A0A6J1KSZ4 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima OX=3661 GN=LOC111496149 PE=3 SV=1)

HSP 1 Score: 690 bits (1780), Expect = 3.14e-243
Identity = 367/468 (78.42%), Postives = 368/468 (78.63%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRN IDVRVLANRYAAQLQLCCPQN SSFSLARTVHAHMIVSGFK RGHLVNRLLDIYWK
Sbjct: 1   MRNVIDVRVLANRYAAQLQLCCPQNSSSFSLARTVHAHMIVSGFKLRGHLVNRLLDIYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFN TPLNMRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNRTPLNMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG
Sbjct: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA
Sbjct: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKELHAYILKNELNPNHDFLLSVSNSLITLYWKYGKVDGARNIFYEMPVKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGLNLFNRMRLDG
Sbjct: 361 SWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEEGLNLFNRMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 642 bits (1655), Expect = 2.76e-224
Identity = 336/468 (71.79%), Postives = 357/468 (76.28%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRN++ +RV+ANRYAAQLQLCCPQNPSSFSLARTVHAHMI SGFKPRGHLVNRLLD+YWK
Sbjct: 1   MRNSLGIRVVANRYAAQLQLCCPQNPSSFSLARTVHAHMIASGFKPRGHLVNRLLDVYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIPNPDAVARTTLITAYS +GNL++AR IFNGTPL MRDTIFYNAMIT
Sbjct: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSAVGNLSLARAIFNGTPLVMRDTIFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           G+SHN DGHSA+ LFHAMRR NF+PDDFTFTSVLSALALIVDNEQQC Q+HGAVVKSGTG
Sbjct: 121 GYSHNDDGHSALELFHAMRRGNFQPDDFTFTSVLSALALIVDNEQQCSQIHGAVVKSGTG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           LVSSVLNALLSVYVKCASSPLV SSSLMASARKLFDEMP+RDELTWTT+ITGYVRNDDLN
Sbjct: 181 LVSSVLNALLSVYVKCASSPLVLSSSLMASARKLFDEMPERDELTWTTMITGYVRNDDLN 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
           GA  LLDTMTEKLGVAWN+MISGYVHHGLF++ALTLFRKMR LGV+ DEFTYTSVISACA
Sbjct: 241 GAHGLLDTMTEKLGVAWNSMISGYVHHGLFQEALTLFRKMRLLGVQHDEFTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           NGG                                                         
Sbjct: 301 NGGFFQLGKQVHAYILKNELNPNHDFILSVSNALITLYWKFGKVDGARKIFYEMPIKDIV 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGEEGL LFN+MRLDG
Sbjct: 361 TWNAILSGYVNSGRMEEAKSFFVEMPEKNLLTWTVMISGLAQNGFGEEGLKLFNQMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL
Match: A0A6J1HDE3 (pentatricopeptide repeat-containing protein At1g25360-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462910 PE=3 SV=1)

HSP 1 Score: 584 bits (1506), Expect = 1.27e-202
Identity = 295/405 (72.84%), Postives = 335/405 (82.72%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRNA+D+R++ANRYAA+LQLC PQ+P+SFSLAR VH HMI SGFKPRGH +NRLL++Y K
Sbjct: 1   MRNALDIRMVANRYAAKLQLCSPQDPTSFSLARAVHGHMIASGFKPRGHFLNRLLEVYCK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SSNLVYARQLFDEIP+PDA+ARTTLITAYS  GNL + REIFNGTPL++RDT+FYNAMI 
Sbjct: 61  SSNLVYARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMII 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           G+SHN DG SA+ LF AMRR +FRPDDFTFTSVLSAL L+VDNEQQCGQMH AVVKSG G
Sbjct: 121 GYSHNDDGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVDNEQQCGQMHCAVVKSGMG 180

Query: 181 LVSS-VLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDL 240
            VSS VLNALLSVYVKCA SPL  SSS M SARKLFDEMP+RDELTWTT+ITGYVRNDDL
Sbjct: 181 CVSSSVLNALLSVYVKCA-SPLAISSSGMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 240

Query: 241 NGARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISAC 300
           NGARE+ D+M EKLG AWNAMISGYVHHG F +AL +FRKMR LG++ DE TYT++ISAC
Sbjct: 241 NGAREVFDSMAEKLGAAWNAMISGYVHHGCFLEALIMFRKMRSLGIQHDEVTYTTIISAC 300

Query: 301 ANGG--------------------------------LAQNGFGEEGLNLFNRMRLDGYEP 360
           ANGG                                LAQNGFG+EGL LF +MRLDG+EP
Sbjct: 301 ANGGFFQQGKQSMRHGRLFIRCHLEILLLGMQSYQGLAQNGFGDEGLKLFKQMRLDGFEP 360

Query: 361 CDYAFAGAITACSVLGSLENGRQLHAQLIHLGHDSSLSIGNAMIS 372
           CDYAF GAITACSVLG+LENGRQLHAQL+HLG++S+LS+GNA+IS
Sbjct: 361 CDYAFTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALIS 404

[Close]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL
Match: A0A1S4DVG9 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=3656 GN=LOC103488043 PE=3 SV=1)

HSP 1 Score: 584 bits (1506), Expect = 1.69e-202
Identity = 306/468 (65.38%), Postives = 339/468 (72.44%), Query Frame = 0


Query: 1   MRNAIDVRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWK 60
           MRN +DVRVLANRY AQL LCCPQNPSS+SLARTVHAH+I SGFK RGH+VNRL+D+YWK
Sbjct: 1   MRNVLDVRVLANRYVAQLNLCCPQNPSSYSLARTVHAHVIASGFKLRGHIVNRLIDVYWK 60

Query: 61  SSNLVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMIT 120
           SS+ VYARQLFDEIP PD +ARTTLITAYS LGNL MAREIFN TPL+MRDT+FYNAMIT
Sbjct: 61  SSDFVYARQLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMIT 120

Query: 121 GFSHNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTG 180
           G+SH  DGHSAI LF AMR +NF+PDDFTF SVLSA  LI D+E+QCGQMHGAVVKSG G
Sbjct: 121 GYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFDDERQCGQMHGAVVKSGIG 180

Query: 181 LVSSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLN 240
           L  +VLN+LLSVYVKCASSPLVSSSSLMASARKLFDEMP+R+E  WTTLITGYVRNDDL 
Sbjct: 181 LFPAVLNSLLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNDDLA 240

Query: 241 GARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACA 300
            ARE+LDTMTE+ G+AWNAMISGY+HHGLFEDALTLFRKMR LGV+LDE TYTSVISACA
Sbjct: 241 AAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQLDESTYTSVISACA 300

Query: 301 NGG--------------------------------------------------------- 360
           +GG                                                         
Sbjct: 301 DGGFFLLGKQVHAYILKNELNPDRNFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDVI 360

Query: 361 ---------------------------------------LAQNGFGEEGLNLFNRMRLDG 372
                                                  LAQNGFGE+ L LFN+MRLDG
Sbjct: 361 SWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMRLDG 420

[Close]

BLAST of Cp4.1LG07g03910 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 398.7 bits (1023), Expect = 5.3e-111
Identity = 212/458 (46.29%), Postives = 279/458 (60.92%), Query Frame = 0


Query: 7   VRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFKPRGHLVNRLLDIYWKSSNLVY 66
           VR +ANRYAA L+LC P   +S  LAR VH ++I  GF+PR H++NRL+D+Y KSS L Y
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67

Query: 67  ARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNV 126
           ARQLFDEI  PD +ARTT+++ Y   G++ +AR +F   P+ MRDT+ YNAMITGFSHN 
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNN 127

Query: 127 DGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTGLVSSVL 186
           DG+SAI LF  M+   F+PD+FTF SVL+ LAL+ D+E+QC Q H A +KSG G ++SV 
Sbjct: 128 DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVS 187

Query: 187 NALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGARELL 246
           NAL+SVY KCASSP     SL+ SARK+FDE+ ++DE +WTT++TGYV+N   +   ELL
Sbjct: 188 NALVSVYSKCASSP-----SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 247

Query: 247 DTMTEKLG-VAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACAN---- 306
           + M + +  VA+NAMISGYV+ G +++AL + R+M   G+ELDEFTY SVI ACA     
Sbjct: 248 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 307

Query: 307 ------------------------------------------------------------ 366
                                                                       
Sbjct: 308 QLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 367

Query: 367 ---------------------------GGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAG 373
                                       GLA+NGFGEEGL LF+ M+ +G+EPCDYAF+G
Sbjct: 368 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 427

[Close]

BLAST of Cp4.1LG07g03910 vs. TAIR 10
Match: AT2G21090.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 9.2e-39
Identity = 108/343 (31.49%), Postives = 177/343 (51.60%), Query Frame = 0


Query: 7   VRVLANRYAAQLQLCCPQNPSSFSLARTVHAHMIVSGFK-PRGHLVNRLLDIYWKSSNLV 66
           +R+  +  A+ LQ C   +  S    + +H H+ ++GFK P   L N L+ +Y K    +
Sbjct: 42  IRLPFDLLASLLQQC--GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPI 101

Query: 67  YARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHN 126
            A ++FD++   +  +   +++ Y   G L  AR +F+  P   RD + +N M+ G++ +
Sbjct: 102 DACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP--ERDVVSWNTMVIGYAQD 161

Query: 127 VDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCG-QMHGAVVKSGTGLVSS 186
            + H A+  +   RRS  + ++F+F  +L+  A +   + Q   Q HG V+ +G  L + 
Sbjct: 162 GNLHEALWFYKEFRRSGIKFNEFSFAGLLT--ACVKSRQLQLNRQAHGQVLVAGF-LSNV 221

Query: 187 VLN-ALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGAR 246
           VL+ +++  Y KC           M SA++ FDEM  +D   WTTLI+GY +  D+  A 
Sbjct: 222 VLSCSIIDAYAKCGQ---------MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAE 281

Query: 247 ELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVISACANGG 306
           +L   M EK  V+W A+I+GYV  G    AL LFRKM  LGV+ ++FT++S +  CA+  
Sbjct: 282 KLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL--CASAS 341

Query: 307 LAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLE 347
           +A    G+E   +   M      P     +  I   S  GSLE
Sbjct: 342 IASLRHGKE---IHGYMIRTNVRPNAIVISSLIDMYSKSGSLE 363

[Close]

BLAST of Cp4.1LG07g03910 vs. TAIR 10
Match: AT1G19720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-34
Identity = 95/314 (30.25%), Postives = 151/314 (48.09%), Query Frame = 0


Query: 64  LVYARQLFDEIPNPDAVARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFS 123
           +++AR  F     PD    T L++ Y+  G +  AR++F+   +  R+   ++AMI  +S
Sbjct: 102 ILHAR--FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDS--MRERNLFTWSAMIGAYS 161

Query: 124 HNVDGHSAIGLFHAMRRSNFRPDDFTFTSVLSALALIVDNEQQCGQ-MHGAVVKSGTGLV 183
                     LF  M +    PDDF F  +L   A   D E   G+ +H  V+K G    
Sbjct: 162 RENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVE--AGKVIHSVVIKLGMSSC 221

Query: 184 SSVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPQRDELTWTTLITGYVRNDDLNGA 243
             V N++L+VY KC           +  A K F  M +RD + W +++  Y +N     A
Sbjct: 222 LRVSNSILAVYAKCGE---------LDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEA 281

Query: 244 RELLDTMTEKLG-----VAWNAMISGYVHHGLFEDALTLFRKMRFLGVELDEFTYTSVIS 303
            EL+  M EK G     V WN +I GY   G  + A+ L +KM   G+  D FT+T++IS
Sbjct: 282 VELVKEM-EKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMIS 341

Query: 304 ACANGGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIH 363
                GL  NG   + L++F +M L G  P       A++ACS L  +  G ++H+  + 
Sbjct: 342 -----GLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVK 394

Query: 364 LGHDSSLSIGNAMI 372
           +G    + +GN+++
Sbjct: 402 MGFIDDVLVGNSLV 394

[Close]

BLAST of Cp4.1LG07g03910 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-34
Identity = 114/395 (28.86%), Postives = 179/395 (45.32%), Query Frame = 0


Query: 25  NPSSFSLARTVHAHMIVSGFK--PRGHLV--NRLLDIYWKSSNLVYARQLFDEIPNPDAV 84
           N +  S  RT   +  +  FK  PR   V  N ++  Y ++     AR+LFDE+P  D V
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127

Query: 85  ARTTLITAYSNLGNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNVDGHSAIGLFHAMRR 144
           +   +I  Y    NL  ARE+F   P   RD   +N M++G++ N     A  +F  M  
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE 187

Query: 145 SNFRPDDFTFTSVLSALALIVDNEQQCGQMHGAVVKSGTGLVSSVLNALLSVYVKCAS-- 204
            N    D ++ ++LSA       E+ C      + KS         N LL  +VK     
Sbjct: 188 KN----DVSWNALLSAYVQNSKMEEAC-----MLFKSRENWALVSWNCLLGGFVKKKKIV 247

Query: 205 -----------SPLVSSSSLMA---------SARKLFDEMPQRDELTWTTLITGYVRNDD 264
                        +VS ++++           AR+LFDE P +D  TWT +++GY++N  
Sbjct: 248 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 307

Query: 265 LNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDALTLF-----RKMRFLGVELDEFTYT 324
           +  AREL D M E+  V+WNAM++GYV     E A  LF     R +      +  +   
Sbjct: 308 VEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQC 367

Query: 325 SVISACAN-----------------GGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAI 372
             IS   N                  G +Q+G   E L LF +M  +G      +F+ A+
Sbjct: 368 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSAL 427

[Close]

BLAST of Cp4.1LG07g03910 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-31
Identity = 102/385 (26.49%), Postives = 171/385 (44.42%), Query Frame = 0


Query: 33  RTVHAHMIVSGFKPRGHLVNRLLDIYWKSSNLVYARQLFDEIPNPDAVARTTLITAYSNL 92
           + VH+ ++  G +    + N LL++Y K  + + A+ +FD +   D  +   +I  +  +
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQV 225

Query: 93  GNLNMAREIFNGTPLNMRDTIFYNAMITGFSHNVDGHSAIGLFHAM-RRSNFRPDDFTFT 152
           G +++A   F    +  RD + +N+MI+GF+       A+ +F  M R S   PD FT  
Sbjct: 226 GQMDLAMAQFE--QMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 285

Query: 153 SVLSALALIVDNEQQC--GQMHGAVVKSGTGLVSSVLNALLSVYVKCASSPLVSSSSLMA 212
           SVLSA A +   E+ C   Q+H  +V +G  +   VLNAL+S+Y +C           + 
Sbjct: 286 SVLSACANL---EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG---------VE 345

Query: 213 SARKLFDEMPQRDELT--WTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHH 272
           +AR+L ++   +D     +T L+ GY++  D+N A+ +  ++ ++  VAW AMI GY  H
Sbjct: 346 TARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQH 405

Query: 273 GLFEDALTLFRKMRFLGVELDEFTYTSVISAC---------------------------- 332
           G + +A+ LFR M   G   + +T  +++S                              
Sbjct: 406 GSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS 465

Query: 333 -------ANGG---------------------------LAQNGFGEEGLNLFNRMRLDGY 351
                  A  G                           LAQ+G  EE L LF  M ++G 
Sbjct: 466 NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 525

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g03910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRI5	7.4e-110	46.29	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX...	[more]
Q9SKQ4	1.3e-37	31.49	Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX...	[more]
Q9FXH1	4.3e-33	30.25	Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	1.2e-32	28.86	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9SHZ8	2.0e-30	26.49	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG07g03910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537093.1	8.97e-253	85.13	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp...	[more]
XP_022951057.1	1.29e-247	79.49	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata]	[more]
KAG7020472.1	1.21e-245	78.85	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6585558.1	1.21e-245	78.85	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023002238.1	6.48e-243	78.42	pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG07g03910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGL5	6.24e-248	79.49	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata...	[more]
A0A6J1KSZ4	3.14e-243	78.42	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima O...	[more]
A0A6J1CRF6	2.76e-224	71.79	pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti...	[more]
A0A6J1HDE3	1.27e-202	72.84	pentatricopeptide repeat-containing protein At1g25360-like isoform X2 OS=Cucurbi...	[more]
A0A1S4DVG9	1.69e-202	65.38	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=36...	[more]

BLAST of Cp4.1LG07g03910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25360.1	5.3e-111	46.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G21090.1	9.2e-39	31.49	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G19720.1	3.0e-34	30.25	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G02750.1	8.9e-34	28.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22070.1	1.4e-31	26.49	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 6..108 e-value: 1.7E-10 score: 42.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 109..169 e-value: 7.2E-7 score: 30.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 170..304 e-value: 1.4E-28 score: 102.2 coord: 305..372 e-value: 3.0E-6 score: 28.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 225..252 e-value: 8.5E-5 score: 20.5 coord: 115..146 e-value: 3.2E-4 score: 18.7 coord: 255..289 e-value: 2.8E-9 score: 34.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 225..252 e-value: 3.5E-5 score: 23.7 coord: 83..103 e-value: 0.074 score: 13.3 coord: 303..324 e-value: 0.036 score: 14.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 111..158 e-value: 2.3E-11 score: 43.7 coord: 255..301 e-value: 1.3E-14 score: 54.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 253..287 score: 10.796938
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..327 score: 9.404853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 222..252 score: 9.45966
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 111..145 score: 9.930995
None	No IPR available	PANTHER	PTHR47929:SF13	BNACNNG04730D PROTEIN	coord: 309..371
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 6..308
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 309..371
None	No IPR available	PANTHER	PTHR47929:SF13	BNACNNG04730D PROTEIN	coord: 6..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g03910.1	Cp4.1LG07g03910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding