Cp4.1LG07g03770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g03770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 2356128 .. 2357982 (-)
RNA-Seq ExpressionCp4.1LG07g03770
SyntenyCp4.1LG07g03770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGATTACGAGAAACGCTAGCATCCGAAAGGAGCTCTGAAAATCTTCCTGGCATAATCGTGCAGAGATTGAAAATCTTCTTGCTAATATGGAAGAACTTCAATCTTCGAATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAAGTAAGTTGGAAAAGATTGAGGTTGATTCTAGAAAAATTAAACGATGAAATTGGTAGAATCTTTCATGAGTTGGAAGTCTCAAGAAAGCATACTGGCGCATCGGTGTTAAACCGATGCACATCTGGCTAGAAAACCTATGGATTAGGAGTGAAGGAAAAAGAAAAGGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGGTAAGAATTTCTTGTCTTGTTGCTTCAGCTATTACTCCTAGGCTCTGTTGTTCTCTTTATCTAAGTTTGAAGTTCTGTGTGCATATGATCCATTTATCAACTATAGCTATCCATTTCCAATTTCATTTTTTAGGAATGAGATGCTCATATTGCTCCAGTACAATTGTAATCTATATGAAACATGGGTCCTGAAAGAGAAACCTAGCACAAACCAGAACTGAAGTTTACTACATATTGTCATGGCTTTCCCTCACGGTTTTAAAACGCATCTATTAGTGAGAGGTTTGCATATCCTTATAAGGAATGTTTCGTTCTCCTCTTCAATCGATGTGGGATATCACAATCCACCCTCTTGAGGGCCTAGCGTCCTCGCTGGGACTCTACCCGGTGTTTGACTCTGATACCATTTGTAACTGCTCAAGCCCACCCTTATAAGGAATGATTCGTTCCCCTCTCCAAACGAATAGCGAAGAGATTGAGAGATTTTTGTCTAAATGAATATGCCTTTTTACCTCATGCCTGTGATCTCTCAATAATGTCAAATTTGTGAGCAATTAAGATAGACTGACTTAATCTGATATCACAATGAAAGAATATTGTGAATGGACAATCCTTCTAGGCTGGTTAGATGTAGTGATCGTGTATTCTTCTTCCTCCGGCTCTTCATTTGATATGATATTGTCCACTTTAACCATAATCTTTTGTGACTTTACTTTTGGTTTACCCAAAAGGCCTCGTACCGATGGAGATGTATTCCTTATTTATAAACCCACGATCAACCCCTTAATTAGCTGATGTGGGACTCCTCTCCTAACAATTCTCAACAATAACATGTTTCGTTTTTTGGTTATTAGGAGGACGGGAGCTTAAAACAGAAGAAAGACGTCGAAAGTGAATCAAAGACCCCTTTCAAATCTCTCAAATTAAGGAGCAGTATGCATGTGTAAGTTAGTACTCTCACAACATATTTGTGGAATTATTGAGAAGGTAGCAATTAAGAGGAACATACTGCAGGGAACAACGCAAAGCCAAAGCATCACAGCCTAATAATAATAGGGTCTCCATATTGATGGAAACCATTTAGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCCGCCGCACCCCAAGGTGAGGCAGCGGTGCCTTCTGCGACGTATACCGGCTCGAGCTTTGTTCTCGGAGTGATGATTACAAGACGACCATATCTAACAATCGAGTTTCCAACAAACACAAACACTAGAGGTAATAACAAGAAAAAGATCTTGAAATTGACCTTTGTTCTTTTCACCTGGGATCTGTAGCTTGAATATGATGACACAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTCGTTTGA

mRNA sequence

ATGCAGAGATTACGAGAAACGCTAGCATCCGAAAGGAGCTCTGAAAATCTTCCTGGCATAATCGTGCAGAGATTGAAAATCTTCTTGCTAATATGGAAGAACTTCAATCTTCGAATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAAGAGTGAAGGAAAAAGAAAAGGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCCGCCGCACCCCAAGCTTGAATATGATGACACAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTCGTTTGA

Coding sequence (CDS)

ATGCAGAGATTACGAGAAACGCTAGCATCCGAAAGGAGCTCTGAAAATCTTCCTGGCATAATCGTGCAGAGATTGAAAATCTTCTTGCTAATATGGAAGAACTTCAATCTTCGAATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAAGAGTGAAGGAAAAAGAAAAGGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCCGCCGCACCCCAAGCTTGAATATGATGACACAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTCGTTTGA

Protein sequence

MQRLRETLASERSSENLPGIIVQRLKIFLLIWKNFNLRIMKRIAQKAGLERVKEKEKASSAQAPRGNGDSGKSGSKADKISKPTTPPATPPHPKLEYDDTDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVV
Homology
[Close]
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match: KAG6585541.1 (hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 2.34e-26
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVV 150
           DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVV
Sbjct: 20  DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVV 69

[Close]
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match: KAG7020454.1 (hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (257), Expect = 6.49e-26
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 149
           DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV
Sbjct: 20  DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 68

[Close]
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match: XP_038884859.1 (uncharacterized protein LOC120075491 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 3.79e-20
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 94  KLEYDDTDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 144
           KLEYD+TD +M KIP  ASRGLGGG MEAKACSAHPCFH GPLLSLINQPI
Sbjct: 315 KLEYDETDRRMAKIPSMASRGLGGGVMEAKACSAHPCFHAGPLLSLINQPI 365

[Close]
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match: PON93893.1 (hypothetical protein TorRG33x02_102830 [Trema orientale])

HSP 1 Score: 51.2 bits (121), Expect = 1.97e-05
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 144
           DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2   DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

[Close]
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match: PON70726.1 (hypothetical protein PanWU01x14_077520, partial [Parasponia andersonii])

HSP 1 Score: 51.2 bits (121), Expect = 4.43e-05
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 144
           DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2   DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

[Close]
BLAST of Cp4.1LG07g03770 vs. ExPASy TrEMBL
Match: A0A2P5F7W8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102830 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.54e-06
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 144
           DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2   DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

[Close]
BLAST of Cp4.1LG07g03770 vs. ExPASy TrEMBL
Match: A0A2P5DBQ6 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077520 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.15e-05
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 101 DSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 144
           DSK T IP  A+RG GG   +A+  S HP FHD  L SL NQPI
Sbjct: 2   DSKTTTIPTIATRGRGGALKDARVRSVHPTFHDELLPSLRNQPI 45

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g03770 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g03770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585541.12.34e-26100.00hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020454.16.49e-26100.00hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038884859.13.79e-2084.31uncharacterized protein LOC120075491 [Benincasa hispida][more]
PON93893.11.97e-0556.82hypothetical protein TorRG33x02_102830 [Trema orientale][more]
PON70726.14.43e-0556.82hypothetical protein PanWU01x14_077520, partial [Parasponia andersonii][more]
BLAST of Cp4.1LG07g03770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5F7W89.54e-0656.82Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102830 PE=4 SV... [more]
A0A2P5DBQ62.15e-0556.82Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of Cp4.1LG07g03770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g03770.1Cp4.1LG07g03770.1mRNA