Cp4.1LG07g03390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g03390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 2151924 .. 2155059 (-)
RNA-Seq ExpressionCp4.1LG07g03390
SyntenyCp4.1LG07g03390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTCCAAAGGGAAAGAGTATTTAAGCGCTATGCGCGAAAGTTCGACGGAGGTAAATTTGTAAAATCCTCGGTTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCAATACCCTTGGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTATTAATTCCCTGACTCCGATCTTTTCGATCTTGAAATTGTATTCAAACTCAAGTCTCGTGTTTTCTCACTTCCTTGCAATATTTGTAGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTGTATGATTCGTTCCTGAAAGAAACTTTAGGGAAACCCTAATTTGTTAATTGTTGTGTGACTGATGTTGTGGAGGCGGCCAAAAAGAGCCACATAACAATGTTTCTCTGTAAGTATCTGTCAGTGTACTCTCAGAATCTTTGTTTGGTATCATAAGAATGTGGAGATGTTTCTTACAAATCAATTTTGATTTGTATGGTTATTCAATTATTGAAATTTGAAGGATCTTGTTTGGTTTTCGTTTTGGAAAGCTGATTTATTTGCTGATTTATACTAATTATATGAACAAACTTGGCTTTTATAGGACTTCAAACTCATTTAGTTAATGTAGGTCTTAAGTTGTCGCTTGAAAGCATGTTTCCATCATGATAGGTGAAGAATCACCAGGTCAAGAATTGAATGAAAGCATTTTATTCTGAAATCCATTGTTGAATACGCTTTATTCTGAAATGTATTGTTGAAGAGTCTGTTTTACGAGATTTAAAATCTACAATTTTGCTATTGAAATTCTCTAAGAAAAAGAAAAAAACATTTGGGAACAAATATATTGCTCGATTTCTCACTAAGAGTAGCTTCCTTGTACCACGGAGAATGAGTTGCAGCAGCTTCTTGTGGACTAAGAGATCCATTAACTTGTCTCATACCAGAGCTCGTTAATAGTGACAAACTTTTGTAGCTAGTCAAATTTTACTTGAAGTAGTGCCACTTTTTCCTAACCAAGCTTTGCTCAACTCAATTGACATAAAGTAGGTTTCTTCGACCAACAAATCAAAGGTTTGAATTTCTTGCCCCCCTTATCGTTGAACTCAAAACATGTGGTTAACTACTTTTCTATAGTCGGCAGGGTCTATCTGGGTTCTATTAGTCAAGAGTTCTCAATGTAAATTTCAGATCAACAGATCAATATGCTGTTTTGCTAGATTTTGAGTTGTTCTGGATCAAGATCACCTACGGTGTTGATCAAACGAGTCTTTTGTGAAATTATTTAATAAATATTAGTTTAAGTAGTGGTGTCACTGAATGAATGAAATTATGTTTTCAGCAAAAAATCTAGTAATGAAGAAAGTGATTATTCAAGATACTCTATGAAAGAGGTAGATTTGGAGTTCCTTCTTAATACTAAATATAAATAGAAAGTTCTTACAAAATAATCTCATTTGCATGAAGCCTAAAAAATTTGTGATGGTTAATTTTCAGACCAACACCAATTGAGGCTTGATGGGATCGTAATTTGAATTTGATTTATTATAGGTTTGATATTTCCTTGAGATATATGAGTCTTAGATTTACATATGTAGTATCCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATTAGAGCTTTATATTCAGGAGTATAATTGCTAGATCTTGTCCTCCATACCTTTCAGCCCAAATTATTGGTGGGATTCAAACCATCTTGGGTTGACTTAGTGGTCAAAAAGAGTCGTGTAAATAATAAAGAGCATAGACAAAATGAGTTTAAGTCAAGGTGATCACGTACTTAAGATTTATTATCTTAGGATCAAATGGTTGTAACCGGGGCGTGTGCAAGCCGATCCAAACACTCATGGATGTTATAAATATGTGTGTATGTCTATATATGTATATATGCAATCTTTTTTTTGGAGGAAGGCATTACACGCACCTAACATCAGCCATGGTGTGTTCCTTCATATGGGTATTTATCTTGGCTGTCATGATCCCCATTTTGTCGGTCTTCTTTTCGCTTTGGTACGTTAGGAATAAAGACAACCATCAGGTTTTGGTTTGGATTTGTTATTGTTTTCCAGCTCTTTTCCAAATAAACTTATCAAATTCTTAAACATATATTTGCAGTGATTAGTTAGTAAATCTTCTTTTTTGTTGTTATTTAATCATCAAATTGATTTAGTTCATGTCCAGCAATGAATTCATTGACATAATCATCATGGAAAATATGTAATTTGCATCCTGTCCTCGTGTTTTCTGTTGAATAGCAAAAGAATATCATCCCTTCAGCTAGCTGCTGTCTTTTGTTCTCTTATTGTAAAATGAGACTCTCTGTATGGTAGCAAAAAGCATATTGCTTTCTCCATTATATATAAAGTTCATCTCTAACTGCTAGAAGAACTGTATTTACATAGGTAAAAAATTAACACTTTGTGGTAGTTTTCTCACTCTTTATTTGCATCAGTAGAAGCAATATGTGGTAAGAAATTGACTCTATTGAAGTGTGGATTAGGTTCTTTCCTTCAAAGGGATTCTAGTTGTCTGTTCAAGCAATCTAATATAGCTCTACTTTTTGCAATGCTGTGATCATAATTGTGTTTATCCAATCTATCTGTATAATCACTTCAATTTTCTGTTGTAATCCTGCTTTTCCAGCTAAGGCAGATCCCAGGACTTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCAGAAGAAGTTTTATTCCTGTAGTATGAGGAAACCATACGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCTTGTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTGAGAAAATCCTGAGAAAATGGGAGGATTTCACCCGGGGCTGGTTGCTTCCTCTTAGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTGAA

mRNA sequence

TATTCCAAAGGGAAAGAGTATTTAAGCGCTATGCGCGAAAGTTCGACGGAGGTAAATTTGTAAAATCCTCGGTTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCAATACCCTTGGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTCTAAGGCAGATCCCAGGACTTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCAGAAGAAGTTTTATTCCTGTAGTATGAGGAAACCATACGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCTTGTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTGAGAAAATCCTGAGAAAATGGGAGGATTTCACCCGGGGCTGGTTGCTTCCTCTTAGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTGAA

Coding sequence (CDS)

ATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCAATACCCTTGGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTCTAAGGCAGATCCCAGGACTTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAG

Protein sequence

MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITLRQIPGLMTSIDAFFTIGVYHVEGRTY
Homology
[Close]
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.58e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33
          MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33

[Close]
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match: KAA0064871.1 (uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 5.52e-11
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL 46
          MANEQR S  PW LE +P +I++LIA+H+ ALVS+SKTTS++E +L
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILALVSNSKTTSKEEGTL 46

[Close]
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 7.14e-09
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33
          MANE+RSS GPW LEA+P ++VLLIAAHVFALV
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALV 33

[Close]
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match: GAY44405.1 (hypothetical protein CUMW_081930 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 7.56e-08
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITLRQIPGLMTS 58
          MANEQ + + PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L  +     L+ S
Sbjct: 1  MANEQPT-LRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKSLIRS 57

[Close]
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match: GAY44404.1 (hypothetical protein CUMW_081930 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 5.26e-07
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITLRQIPGLMTS 58
           MANEQ + + PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L  +     L+ S
Sbjct: 100 MANEQPT-LRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKSLIRS 156

[Close]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match: A0A5A7VGM0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001840 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.67e-11
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL 46
          MANEQR S  PW LE +P +I++LIA+H+ ALVS+SKTTS++E +L
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILALVSNSKTTSKEEGTL 46

[Close]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match: A0A2H5NX53 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.66e-08
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITLRQIPGLMTS 58
          MANEQ + + PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L  +     L+ S
Sbjct: 1  MANEQPT-LRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKSLIRS 57

[Close]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match: A0A2H5NWA0 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.55e-07
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITLRQIPGLMTS 58
           MANEQ + + PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L  +     L+ S
Sbjct: 100 MANEQPT-LRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKSLIRS 156

[Close]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match: A0A2P5F9W8 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.61e-07
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33
          MANEQ S   PW L+A+PL++VLLIAAHVFALV
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALV 33

[Close]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match: A0A7N2KTP9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.12e-06
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MANEQRSSIG-PWFLEAIPLVIVLLIAAHVFALVSDSKTTS 40
          M NEQ SS   PW L+A+P V+VLLIAAHV ALV   KTTS
Sbjct: 1  MTNEQHSSSPRPWLLDAVPFVVVLLIAAHVLALVHSQKTTS 41

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g03390 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g03390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020426.11.58e-12100.00hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0064871.15.52e-1160.87uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa][more]
KAG7029467.17.14e-0978.79hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma][more]
GAY44405.17.56e-0848.28hypothetical protein CUMW_081930 [Citrus unshiu][more]
GAY44404.15.26e-0748.28hypothetical protein CUMW_081930 [Citrus unshiu][more]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGM02.67e-1160.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2H5NX533.66e-0848.28Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1[more]
A0A2H5NWA02.55e-0748.28Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1[more]
A0A2P5F9W86.61e-0772.73Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1[more]
A0A7N2KTP91.12e-0665.85Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
BLAST of Cp4.1LG07g03390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g03390.1Cp4.1LG07g03390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane