Cp4.1LG07g01810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g01810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRhamnogalacturonan endolyase
LocationCp4.1LG07: 1116332 .. 1124604 (-)
RNA-Seq ExpressionCp4.1LG07g01810
SyntenyCp4.1LG07g01810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGGCCCAATGGTGGAGGCATTGGGGGGAAAGAAGAACAGAAAAAAGGCGCGACATGGTCTTCACTCTCTGCTGTGGAGTCGCGGCTCCATTGCTATCGGCCTCTGCCGTTCGAGGTTCTTTTGCCGTTCAGCTTCCGATTATCCAATCTCCTCATCTCCCTAACGGATTCCTATCTTTCTCTCTCTCTGTCGTTTGCGTTTCTCTTGAGGTACTTGTTTTTTGATTCCTTGCCTTTTCTCTTGATTCTTTTCTTCTATGTCTGTTTCTTGCTGTGAATTTGATTTAGTTACTGGTTTGTATGTTTAGATTCTTTGTTTGATCAGTGTTCTTGTTGGTTTACTAATGGAAAACGTATGTCAGGTCGAAGTTTGCCGGTCAAGTACGGGCTGGGAATGTACATTTGATAAAAATGGAAGGGAGTAGTGCCGCGGTGGCTAGCATTGTTGTTTATGTCACTGTTTCTAACAGGTAAGTCTCGCGTTCTTTGTGGTCGGATTAAACTAGATGTTTTTGGTCGCTATATCTTTTGTTTTGTGGTTTCTAGTATCTTATGTAAGGTTGCTTGTCAGTCAATCTAATGATCAGCCAGTCAGGCTCTTTTAGCAGCATTTATTTTGGTTGATGGTAACATAGTGGTATAGTGATCTAATAGTATGGGAGTTGGTGGTATGGTTTCAGTAAACTTGTTATGCCAGTAATGTCTTCACAAGGCGTTTCTGGGTGAAAATTATGTTAGCTACTGATGGAGTGAATGTTGATAGGATATTGTTGATTATGAGGTAGATATACTTAGCGCATTGCACAAATAATGACCAGACCTGGTCAGCTAACGAAGAATTATATCTCGACAGTTGATTGGCTTCTTCTAGTGTCAATAAATGCTTGGCAGAACTGTACTTCGTTTTAGTAGATGTTTTATGTTTCTTTATAGTCATTATCGCTATTTCTGCAGGTAAGAAATTGGCTGAAAGCATTTTCAAGAAAAACTTGCGCTTGTGTTAACATAGTACCTGGTACGTGCATTTTTTCCCGCCTCTGATTGTCATCTTAGGTGATAGAATGCATTTCTCACAGTGTGGAAAAGATAGTATATCAACAATATTTATAATCCACGCTTGGAGAACATTTGATGTTGTCCTATAAGTTCTCTGTTCATATCAATGAAGTTGCTTCTGAACATTGAAAATTTGAAGCTTCCTGGATCTTCCCTGTAATATTCCATTGCTGTTTTTCAGTGAAGGAAACTTATTAGAAAAGTTCAGTTGATCAGATTGGGAAACAAAGTTGTTTTCCTTTTGATCAATTCTCACTTACTAATTGTTTTTTAACATTTCCTAATTGCTAGTACTTATTCTTTGTCAATTCATGTACTTCCGGAATGTTTTTAAAATCTTAGCTAAAATTTGAAAACTAATAAAAATATAGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAAATTTGACTAAAATTTTAGAACTATCTTAAAGAATGAAAAACTAAACAAAGAAGAGAGGCATAACTCATAAGTACCAGAAAACCAAAAAAATAAGATCTTAGTTATCTGTTTCTTGTGGAAATCTGAAGGTGTTATGACGCTTTTCAAGGTGTGGGGGAATCAGGGAGATTTTTTAAAAGCCCTGTTTTGTCCCTTCCAAGGATTTACTTCCATTTTCTTACACAGGGTGCCTGAAGTTCTTGCTTTGCCTATCAATGGTGGCAGGCTCAAGTACCTAGAGTGGATCAGGAGCAGCACGAAGGACTGACTTCCTCTGCTTTAACAAGTTAATTTGATTATATGAAACCCCTCCCTCCCAGCGTTATGTGCAAGTGTGTCAATAAACTCGTCTGTCGTCTTAGTAGTTGAAATATATGTGTTGTCCTCTAAATAAGAATTGAAATTTGGTAACCAGTTAGATATCTTTTGTCCTTCAATCTCTGTGCATTGGGCTTTACTCATTCCCTAAACTTACAGAAAACATGGCTTGGGAAAATTTGTGGGAGAAAAACTGCGGGAATATTGGACTTGATTCGAGGTCAGAAATCTCAACCTCAAAACTTCTCACTGTTTCGCATTTCATAATGATTTCCAAGAAATAATTGTTGGTTGAATTCTTTCCTATATCGTCTTGCAAATAACTCCAATTGGTCAATAATTTTATGAAAAAGTTGAGGCAAAAACTAGTGAAAATGTTTCGCATGTGCTATCTAAGGTTTATAAGATGGGCCATTATACAAAGGTTGAGATTAAATGGTGTTCCATATCTCAAGCTGTGTTTTATTTCTTATTTGTTTTTTGTTTTGAATCCCTGTTCAATACACGTCTTAGTTGAATTTCGACAAGTTTTGATGGCTTTCTTCCATGATTTTCCAAAATTTCTTACATTAAACCCACAGAACTTTTCATTTTCAAACGAAAGAGCATTGTTGTACTTCCGATCATGATTAGCTTTTTCTTCCCTTTTTCTTGATCTGTCGAAATCCATTTGAGCTCTCTATCCAATGGGGACGTCAAAGACTACCCATGAAGGAAATACCCAATTTTCATTGATAATTTTGTTACTTTGGTCATTAACTTTAGCTAGTTCCCATTAGTATTGGGTAATAACTTTTTTCTTTTTGGGACAGTTCCATCATAACTATTCACAAAAAGCATTCACAAAAAGAAATCTCTTGCGATGCTAAACTTCGATATACTTGAAAGTATCATTTAAGAAAACAAAAACTTGTTTTTAAAAGGAAGCAAAAAGATGATCTAATTCGTTTAATATTTTAAATTATGTCACGATAACTTGAAACTCAACTAAACTTAACCAAGAACATCAAGAAGGGAAAGTGAAAACTAGGATGCAACAGGAGTTTGATTTTGACTTGCAACTCTAAGTAGCGAATCTTACACTTCACGCCTAATTGGCGACCAAGTAAAGATATAGAAAAAAAACAGACCAAAAAGATTCTTAAAAAAGTTTGTGGTTTTGGACCTTTTTGTTTATGTAAAGCTAAAGAAACCCAACCCTGAATTTCACATTCAAATGTAAGTAATCTCTTCTTCCCCAAACTTAACACATTATCCTCAACTTCCCAGAAATAAGACATTACTTTTGTTAGATATAGAGGTTGGCTTATCTATCAACCAGTAGGTCGAGGGCTGTCAACATGCCGCCACTGGGTGTGCAACTCTCCATTGCAGAACATCAGGTACGTCCATCCCTCCCTCTTTCTCTCTTTATGTCCTCTCATTTTTGTTAGGAATCACGGATATCCACAATGGTATGATATTGTCCACTTTGAGTATAAACCCACTTTATTTTTTTTTTTCCGAGACCTTATACTAATAGAGATGTATTCATTACTTATAAACCTATTATCATTTCCTTAATTAGTCAATGTGAGACTACCTCCCAACAATTAACACTTTTGATGTCAAAACCGAGAAATGTGCAGGTGACAATGGACAATGGCATAGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTATATTATGAACGAAAAACTTGCTTCATATAAGTCAGTAGGTGTTCCTATTGGCTTGTTAATTTGACCAATGCTTCGTTGATTAAAAAATATATGCAACCTAAGGACATGTTCCATGCATGCAGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGTATGTATTCTGCTTTTTTGCTCACCAACTTGCATTTCTTGCTGATCTTCTGGCCTGCAGTTCTTTGGTTGTATATTTTGAGTTTGCCAAATTTGCTTTGTAGGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATTGATAAAAGGTTGAGATTGATTCAGATCTTGATTATTAAATTGCAAACTTCTTTCTGATGAATGGATTTGAAGCTATGTAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAGGTACGAAATTCTCAATAATATTCCACTGAATGTTTACTTTAAAGCATTCTTGTGGACTTTATAGTTATTCTGGACAATCTTTTGTAGGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTCGACCCCATCGAATCCGAGCTTCAGGGAGAGGTCCATTATCGAATCTATTCTAATTAAATTTTATTTTTGTTAGGAACCACGAACCTGCACCGTGATATGAGATTATCCACTTTGAGCATAAGCTCTTACAACTTTGCGATTGGTTTCCCCAAAAGTCTTCGTACGAATGAAGATGTATTCTTTTTTTTATAAATCTATAATCATCCTCTCTAAATTAGCCAATGGGACTCCCTCCCGACGATCACAAAACCCAAACAGCCTAAATTTAACTTAATACCTTCTCTTACTTAGCTTGGAAGAACGAAATTTTATTAGACTAATGGGAAAAACCAGAGTCGTGGAAACGTAAATGTGTTCTGATTCTTCTTCTCATGGTTGTGTACTGTAAAGGTGGATGACAAGTATCAGTATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTAAGCGATTTTTCTTGTTGCCTCCATTCATGACTTTAATGTTTGTGCGCATCAGAAGCCAGAGACTAAGCCAAAAACGACCGTATGGAATCAGGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGTTTTCTCTTTTAACTCTTCATTTTCCTTGAAAATTGTTAGGAGAGGAAAGGAGTCGTGGATCAGTAAGAAATACTATCTCATTGTTTATTAGAAAACCATAACAAATTAGACAGTGTATTTGTGGTTGTCCATCGTGCCTATGTAGTCCATAAAAAATTACATAGATTTTAATTAGTTTAAAGAGCCAATTTGTATTTAAAACTAAATTATCGTTCAATCAAAGACTAATTTCTTCCCTACAACAAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGGTACACATTTTCCATTGAATTTTATTATGAAATTTAATTTGAGAAATAAAAATATTCTTGAAATATATTTTGTTGGTAGTATATTTTATTTTTAGGAATGGATTGATATATAAGTTAGTTGGTAGCTTGTATCCTTACATGTAGGTAGCTTGCTTGTATAGTTGTATATTATTTAAATGTTGGGAACATTAATAAATATCTTATTTTCGATTCTATTTATATTTCTCGTTTTTAACATATTTTTGTTGAATTTTTAGTTCTTAATCCAAAAATTGATTAGTTAAAGTAAATGACATGATCTAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGTAGACATTCATATTTTGAAAGAAAATATGAACAATATATATTAAATTCATCGTTTAAATATTATCAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTCTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATTCTATCATCAACATTACAGAAGGTTCTTATTTTCTTACTATGATTCAACAATCAATTTGATTCCAATTAATGTTAGAGATTGTAGAGGATTTCCATGATTGCGGGTTTATAAATAAAGAATAGATCTCCATTAGTATGGTTTTTTTTGTTGAGAAAATCCAGAGTAAAACTATGAGAGCTTACGCTCAAAGTAAACAATATTATACTATTATGAAGATCCGTGATTCTTAATAATTAATTATATACGTGCTGAGAATATAGGTAGTCAGATAGACGTCGATGAGATAATATACGAGCCTCCAAGAGCAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTAAATCAATCTTCTTGCCATAATTATTCATTAATCCCTTCGATTGATTCTCAAAGTTGATAGTTGATTTATCAGGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGTGTGCTTCTTCTTTCTCATCAAACTCGTCTGGTCCCGAAAAATAATTAAATTACACTAAATGTTGTCTTTTCTAACTCTAGAAAATCAAATTTTGAGATTGATAAATTGTAACTGCCCTAGCCCACTACTAATAGATATTGTCTTTTATGGGTATGCTAGGGAGAGGTTTACACACCCACCCATTATAAAGAATGTTTCGTTCTCCTCCCTAACCGATGTGGGATCTCACAATCCACCTCCCCACCTCCCTTCAGAACCCAGCGTCCTCGCTGGCCTTCGTTCTCTTCTCTAATCGATGTGGAACCCCCAATCCACCCCCATTCGGGGCTCAATGTCATTACTTGCACACCGTCTCGTGTCTACACCCAATCCACCCCCTTCAAGGTCCAACGTCCTTGCTGGCACACCGTCTTGTGTCCACCTCTCTTCGGGGTTCAGCCTCCCCAATGGCACATTGTCCGGTGTCCTTTCGGGATTCAATCTCTTCGCTGGCACATCGCCCGGTGTCCTTGCTTTAATACCATTTGTAACGGTCCAAGCCCACCACTAGCCGATATCTTTTTTGAATTTTTCCTTTTGAAATTCTTCTCAAAGTTTTTAAAATGCGTTTGCAAGCCCCCCTTATAATGTGGATCTCACGTAAATGAGGATTGAAAATGAGCTTGTTGCAGTCGTTGTCTTCTAAAAACTGAGTCGTTTCACGAAGTCCAAATCAACGATATCATGAACATTTAACAATATGAGAGAACAAGTCGTTTAGAGTATCAGATTTAAGCTGGAAGCAGGCGGCTATATATGAAACCAAATTGAGCAGTGAAAGATCAACCAAAGTTGTATCTAATTATATGTATTAACGTATATTAACCACTGCCAAGAAGAAGAAGAGAATACAAACAGCTTCTGTTGATCTACAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACCAGCTTCGGGTCGCACTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTTACAAATTTAAAATTTGTTCAACTTTTGCAGAGTTTCCAACCATTAATTACTGAGACGAAAGTTTGATGTTTTGAAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATCGCCAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCACCTCCGTCCTCCGCCCATGGTTTGTTATAATATTCCCTTCTCATAATACTCTGCTCCTTTATTGCCCCATCAGCATGCTCTGTTTTTTCTTTCTTCTTTATTCACTATTTTTAGATTCATTCCCTCTTCGAAAGCAATTATGAACTATGAAATCCCATTTGCGAAAGGTATAATATTTGTAAAAGTTTTTGTTG

mRNA sequence

GAGGGCCCAATGGTGGAGGCATTGGGGGGAAAGAAGAACAGAAAAAAGGCGCGACATGGTCTTCACTCTCTGCTGTGGAGTCGCGGCTCCATTGCTATCGGCCTCTGCCGTTCGAGGTTCTTTTGCCGTTCAGCTTCCGATTATCCAATCTCCTCATCTCCCTAACGGATTCCTATCTTTCTCTCTCTCTGTCGTTTGCGTTTCTCTTGAGATTCTTTGTTTGATCAGTGTTCTTGTTGGTTTACTAATGGAAAACGTATGTCAGGTCGAAGTTTGCCGGTCAAGTAAGTCTCGCGTTCTTTGTGGTCGGATTAAACTAGATGTTTTTGGTCGCTATATCTTTTGTTTTGTGGTTTCTAGTATCTTATGTAAGGTAAGAAATTGGCTGAAAGCATTTTCAAGAAAAACTTGCGCTTGTGTTAACATAGTACCTGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAGGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTGGATGACAAGTATCAGTATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTCTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATTCTATCATCAACATTACAGAAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACCAGCTTCGGGTCGCACTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATCGCCAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCACCTCCGTCCTCCGCCCATGGTTTGTTATAATATTCCCTTCTCATAATACTCTGCTCCTTTATTGCCCCATCAGCATGCTCTGTTTTTTCTTTCTTCTTTATTCACTATTTTTAGATTCATTCCCTCTTCGAAAGCAATTATGAACTATGAAATCCCATTTGCGAAAGGTATAATATTTGTAAAAGTTTTTGTTG

Coding sequence (CDS)

ATGGTCTTCACTCTCTGCTGTGGAGTCGCGGCTCCATTGCTATCGGCCTCTGCCGTTCGAGGTTCTTTTGCCGTTCAGCTTCCGATTATCCAATCTCCTCATCTCCCTAACGGATTCCTATCTTTCTCTCTCTCTGTCGTTTGCGTTTCTCTTGAGATTCTTTGTTTGATCAGTGTTCTTGTTGGTTTACTAATGGAAAACGTATGTCAGGTCGAAGTTTGCCGGTCAAGTAAGTCTCGCGTTCTTTGTGGTCGGATTAAACTAGATGTTTTTGGTCGCTATATCTTTTGTTTTGTGGTTTCTAGTATCTTATGTAAGGTAAGAAATTGGCTGAAAGCATTTTCAAGAAAAACTTGCGCTTGTGTTAACATAGTACCTGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAGGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTGGATGACAAGTATCAGTATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTCTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATTCTATCATCAACATTACAGAAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACCAGCTTCGGGTCGCACTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCAATCGCCAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCACCTCCGTCCTCCGCCCATGGTTTGTTATAA

Protein sequence

MVFTLCCGVAAPLLSASAVRGSFAVQLPIIQSPHLPNGFLSFSLSVVCVSLEILCLISVLVGLLMENVCQVEVCRSSKSRVLCGRIKLDVFGRYIFCFVVSSILCKVRNWLKAFSRKTCACVNIVPVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGLL
Homology
[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy Swiss-Prot
Match: B8N5T6 (Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rglB PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-22
Identity = 114/469 (24.31%), Postives = 191/469 (40.72%), Query Frame = 0 

Query: 298 KYQYSCDNKDSGVHGWI-----STDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAV 357
           KY +S   +D+ VHG       S     G WL+  + +   GGP+  +LT  V       
Sbjct: 216 KYTFSNLWRDNSVHGLYADGTNSNGTTYGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNY 275

Query: 358 FISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA-SIEVQSW 417
            +S H+ GE   P I  G  + + FGP +   N    S  +L   ED +S+A ++    W
Sbjct: 276 LVSNHH-GEG-TPNITNG--FDRTFGPQYYLFNGGKGSKSSL---EDLRSEAETLADPGW 335

Query: 418 PYSFPAS-----EDFPKSNQRGNISGRL-LVKDSYVSEDYIPANGAFVGLAPPGDVGSWQ 477
              F  S       +  S++RG++ G++ L K S      +  +G +             
Sbjct: 336 NADFYDSIAKHVIGYAPSSKRGSVQGQVKLPKGSTRPIAILTVDGQY--------FQDNS 395

Query: 478 RESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYD-------SIINITE-- 537
            E+  +Q+W+   +DG F +DHV+ G Y L  +  G  GD+ +D        +  + E  
Sbjct: 396 VEASSHQYWAEMGQDGTFQLDHVKEGKYRLTVFADGIFGDFVHDGVEVQAGKVTKVQETW 455

Query: 538 -----GATLWEIGVPDRSAAEFYVPD-PNPNYVNKLYLNHPDKFRQYGLWERYSELYPDA 597
                G  +W +G PD+S+ EF   D P+P +     L+ P  F  +G ++ + + +P+ 
Sbjct: 456 EQESAGVEVWRLGTPDKSSGEFLHGDAPDPTHP----LHPPQHFIYWGAYD-WQQDFPNG 515

Query: 598 DLVYTVGVSDYTKD-----WFFAQVTRKTENGTFKGT-TWQVKFELD--NVDSQATYQLR 657
            + YT+G SD   D     W     T    +  +  T  W + F LD   +  + T  L 
Sbjct: 516 -VNYTIGSSDPAVDFNTVHWSVYGPTPANPDVEYDTTHDWTINFSLDKKQLQQRKTATLT 575

Query: 658 VALASASLA----------------ELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLY 708
           + LA A  A                 L+  +N+ K       G     + I R  +    
Sbjct: 576 IQLAGAKTAAGNTDVYNATEPYANLALESYINEQKEPLTLLVGFNQSSSCIVRSAVSCYQ 635

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy Swiss-Prot
Match: Q5B5P1 (Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rglC PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-13
Identity = 101/439 (23.01%), Postives = 163/439 (37.13%), Query Frame = 0 

Query: 218 RFIMLRG-SSGFYSYAIYQHLKEWPGF--NLGETRLAFKLRKDRFHYMAMADNRQRSMPL 277
           +++ LRG  +G ++++   +  E   F   LGE R  F+   + + + + ++     MPL
Sbjct: 121 QYLFLRGEETGLHAFSRVTYYNESDYFLRGLGELRTLFRPNTNLWTHFSGSEGNYGPMPL 180

Query: 278 P-------DDRSPPRGRALAYPEAVLLVD--DKYQYSCDNKDSGVHGWISTDP------P 337
                    D +   G     P      D   KY  +   +D  VHG  S          
Sbjct: 181 SSTEKITVQDATTYLGDTTDDPYVSQYSDYFTKYTLTESWRDHDVHGHFSNGSTSGDGNT 240

Query: 338 IGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGP 397
            G WL+  + E   GGP+  +L   V        +S HY      P       + + FGP
Sbjct: 241 YGAWLVHNTRETYYGGPLHADLV--VDGIVYNYIVSGHYG----APNPNLTHGFDRTFGP 300

Query: 398 VFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASE--DFPKSNQRGNISGRLLVK 457
            + + NS    +   +L  D    AS E  +  Y   A    ++  S  R    G++ + 
Sbjct: 301 QYYHFNSGGPGTTLEELRADAAQYASPEWNAEFYDSIAKHIPNYVPSTGRTTFRGKVNLP 360

Query: 458 DSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYA 517
                   + +            +  ++++S   Q+W+  D  G F I  V  G Y +  
Sbjct: 361 KGAKKPIIVLSEN-----EQDFQLNVFKKDS--LQYWAEIDGSGAFTIPRVVKGTYRVTI 420

Query: 518 WVPGFIGDYRYDSIINI------------TEGATLWEIGVPDRSAAEF---YVPDPNPNY 577
           +     G +  D++  I            T G  +W IGVPD+S+ EF   Y PD +   
Sbjct: 421 YADEIFGWFIKDNVKVIGSNAHTFTWKEETAGKEIWRIGVPDKSSGEFLHGYAPDTSKPL 480

Query: 578 VNKLYLNHPDKFRQYGLWERYSELYPD---ADLVYTVGVSDYTKD-----W-FFAQVTRK 611
                   P+++R Y  W +Y   YP      + Y VG SD  KD     W FF      
Sbjct: 481 -------QPEQYRIY--WGKYD--YPSDFPEGVNYHVGKSDPAKDLNYIHWSFFPSQGNH 535

[Close]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match: XP_023537007.1 (probable rhamnogalacturonate lyase B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537008.1 probable rhamnogalacturonate lyase B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537009.1 probable rhamnogalacturonate lyase B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537010.1 probable rhamnogalacturonate lyase B isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1224 bits (3167), Expect = 0.0
Identity = 593/620 (95.65%), Postives = 593/620 (95.65%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG                AT
Sbjct: 382 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 719
           PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match: XP_023001855.1 (rhamnogalacturonate lyase B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 1207 bits (3123), Expect = 0.0
Identity = 582/619 (94.02%), Postives = 587/619 (94.83%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPT+LAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTSLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYD SDA QLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDFSDAFQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYF IDHVRPGDYNLYAWVPGFIGDYRYDSIINI EG                AT
Sbjct: 382 RADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYDSIINIIEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASAS+ ELQVGVND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIVELQVGVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 718
           PKAKP+FSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPLFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match: XP_022951036.1 (probable rhamnogalacturonate lyase B isoform X2 [Cucurbita moschata])

HSP 1 Score: 1206 bits (3121), Expect = 0.0
Identity = 583/620 (94.03%), Postives = 588/620 (94.84%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPL IDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELKGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYF IDH+RPGDYNLYAWVPGFIGDYRYDSII+I EG                AT
Sbjct: 382 RADEDGYFFIDHIRPGDYNLYAWVPGFIGDYRYDSIIDILEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSA EFYVPDPNPNYVNKLYLNH DKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAEEFYVPDPNPNYVNKLYLNHSDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASAS+AELQVGVND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIAELQVGVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 719
           PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match: KAG7020263.1 (rhiE [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1205 bits (3117), Expect = 0.0
Identity = 583/620 (94.03%), Postives = 588/620 (94.84%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPL IDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISG+LLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGKLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYF IDHVRPGDYNLYAWVPGFIGDYRY+SIINI EG                AT
Sbjct: 382 RADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYNSIINILEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASAS+AELQV VND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIAELQVVVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 719
           PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match: XP_023001852.1 (probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima] >XP_023001853.1 probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima] >XP_023001854.1 probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima])

HSP 1 Score: 1199 bits (3101), Expect = 0.0
Identity = 582/630 (92.38%), Postives = 587/630 (93.17%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY-----------WDLVWNPSASATGS 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY           WDLVWNPSASATGS
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYIMNEKLASYKYWDLVWNPSASATGS 81

Query: 187 FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ 246
           FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ
Sbjct: 82  FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ 141

Query: 247 HLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 306
           HLKEWPGFNLGETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV
Sbjct: 142 HLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 201

Query: 307 D-----------DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 366
           D           DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH
Sbjct: 202 DPIESELQGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 261

Query: 367 VGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA 426
           VGPT+LAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYD SDA QLWEDGKSQA
Sbjct: 262 VGPTSLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDFSDAFQLWEDGKSQA 321

Query: 427 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 486
           SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW
Sbjct: 322 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 381

Query: 487 QRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG------- 546
           QRESKGYQFWSRADEDGYF IDHVRPGDYNLYAWVPGFIGDYRYDSIINI EG       
Sbjct: 382 QRESKGYQFWSRADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYDSIINIIEGSQIDVDE 441

Query: 547 ---------ATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP 606
                    ATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP
Sbjct: 442 IIYEPPRAGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP 501

Query: 607 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASA 666
           DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASA
Sbjct: 502 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASA 561

Query: 667 SLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 718
           S+ ELQVGVNDPKAKP+FSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT
Sbjct: 562 SIVELQVGVNDPKAKPLFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 621

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match: A0A6J1KMB3 (Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV=1)

HSP 1 Score: 1207 bits (3123), Expect = 0.0
Identity = 582/619 (94.02%), Postives = 587/619 (94.83%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPT+LAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTSLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYD SDA QLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDFSDAFQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYF IDHVRPGDYNLYAWVPGFIGDYRYDSIINI EG                AT
Sbjct: 382 RADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYDSIINIIEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASAS+ ELQVGVND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIVELQVGVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 718
           PKAKP+FSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPLFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match: A0A6J1GGG5 (Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111454003 PE=3 SV=1)

HSP 1 Score: 1206 bits (3121), Expect = 0.0
Identity = 583/620 (94.03%), Postives = 588/620 (94.84%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 81

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVENEDQVELSFTRKWDLSLEGKLVPL IDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG
Sbjct: 82  IVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 141

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD---------- 306
           ETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVD          
Sbjct: 142 ETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELKGEV 201

Query: 307 -DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
            DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS
Sbjct: 202 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 261

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
           AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF
Sbjct: 262 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 321

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
           PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS
Sbjct: 322 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 381

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG----------------AT 546
           RADEDGYF IDH+RPGDYNLYAWVPGFIGDYRYDSII+I EG                AT
Sbjct: 382 RADEDGYFFIDHIRPGDYNLYAWVPGFIGDYRYDSIIDILEGSQIDVDEIIYEPPRAGAT 441

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIGVPDRSA EFYVPDPNPNYVNKLYLNH DKFRQYGLWERYSELYPDADLVYTVGVS
Sbjct: 442 LWEIGVPDRSAEEFYVPDPNPNYVNKLYLNHSDKFRQYGLWERYSELYPDADLVYTVGVS 501

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASAS+AELQVGVND
Sbjct: 502 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIAELQVGVND 561

Query: 667 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 719
           PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI
Sbjct: 562 PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAI 621

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match: A0A6J1KHT0 (Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV=1)

HSP 1 Score: 1199 bits (3101), Expect = 0.0
Identity = 582/630 (92.38%), Postives = 587/630 (93.17%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY-----------WDLVWNPSASATGS 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY           WDLVWNPSASATGS
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYIMNEKLASYKYWDLVWNPSASATGS 81

Query: 187 FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ 246
           FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ
Sbjct: 82  FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ 141

Query: 247 HLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 306
           HLKEWPGFNLGETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV
Sbjct: 142 HLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 201

Query: 307 D-----------DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 366
           D           DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH
Sbjct: 202 DPIESELQGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 261

Query: 367 VGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA 426
           VGPT+LAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYD SDA QLWEDGKSQA
Sbjct: 262 VGPTSLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDFSDAFQLWEDGKSQA 321

Query: 427 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 486
           SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW
Sbjct: 322 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 381

Query: 487 QRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG------- 546
           QRESKGYQFWSRADEDGYF IDHVRPGDYNLYAWVPGFIGDYRYDSIINI EG       
Sbjct: 382 QRESKGYQFWSRADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYDSIINIIEGSQIDVDE 441

Query: 547 ---------ATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP 606
                    ATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP
Sbjct: 442 IIYEPPRAGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP 501

Query: 607 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASA 666
           DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASA
Sbjct: 502 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASA 561

Query: 667 SLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 718
           S+ ELQVGVNDPKAKP+FSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT
Sbjct: 562 SIVELQVGVNDPKAKPLFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 621

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match: A0A6J1GGK0 (Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111454003 PE=3 SV=1)

HSP 1 Score: 1198 bits (3099), Expect = 0.0
Identity = 583/631 (92.39%), Postives = 588/631 (93.19%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY-----------WDLVWNPSASATGS 186
           VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGY           WDLVWNPSASATGS
Sbjct: 22  VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYIMNEKLASYKYWDLVWNPSASATGS 81

Query: 187 FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQ 246
           FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPL IDKRFIMLRGSSGFYSYAIYQ
Sbjct: 82  FDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQ 141

Query: 247 HLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 306
           HLKEWPGFNLGETRLAFKLRKD+FHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV
Sbjct: 142 HLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLV 201

Query: 307 D-----------DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 366
           D           DKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH
Sbjct: 202 DPIESELKGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSH 261

Query: 367 VGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA 426
           VGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA
Sbjct: 262 VGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQA 321

Query: 427 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 486
           SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW
Sbjct: 322 SIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSW 381

Query: 487 QRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEG------- 546
           QRESKGYQFWSRADEDGYF IDH+RPGDYNLYAWVPGFIGDYRYDSII+I EG       
Sbjct: 382 QRESKGYQFWSRADEDGYFFIDHIRPGDYNLYAWVPGFIGDYRYDSIIDILEGSQIDVDE 441

Query: 547 ---------ATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYP 606
                    ATLWEIGVPDRSA EFYVPDPNPNYVNKLYLNH DKFRQYGLWERYSELYP
Sbjct: 442 IIYEPPRAGATLWEIGVPDRSAEEFYVPDPNPNYVNKLYLNHSDKFRQYGLWERYSELYP 501

Query: 607 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASA 666
           DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATY+LRVALASA
Sbjct: 502 DADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASA 561

Query: 667 SLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 719
           S+AELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT
Sbjct: 562 SIAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFT 621

[Close]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match: A0A6J1BSU2 (Rhamnogalacturonan endolyase OS=Momordica charantia OX=3673 GN=LOC111005034 PE=3 SV=1)

HSP 1 Score: 1139 bits (2945), Expect = 0.0
Identity = 557/712 (78.23%), Postives = 609/712 (85.53%), Query Frame = 0 

Query: 36  PNGFL-SFSLSVVCVSL-EILCLISVLVGLLMENVCQVEVCRSSKSRVLCGRIKLDVFGR 95
           P+ FL S +L+ + +S+   L L  + VG +     Q ++ R+S+ + +C   ++    +
Sbjct: 4   PDCFLLSLNLNTLGLSITHTLTLQQICVGKMHGEKLQKDLVRASQKQDICSVRRIGFSAQ 63

Query: 96  YIFCFVVSSILCKVRNWLKAFSRKTCACVNIVPVQVTLSNPDGIVTGIRYNGVDNLLEVL 155
            +   + S  +      ++ +  +    ++   VQVT SNPDGIV GIRYNGVDNLLE+L
Sbjct: 64  QVRTVIKSKAVDMPPLGVQLYVTERQVVMDNGIVQVTFSNPDGIVIGIRYNGVDNLLEIL 123

Query: 156 NDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPL 215
           NDE NRGYWDLVW+PSAS TGSFDVIKAT FEVIVENEDQVELSFTRKWDLSLEGKLVPL
Sbjct: 124 NDEYNRGYWDLVWSPSASTTGSFDVIKATSFEVIVENEDQVELSFTRKWDLSLEGKLVPL 183

Query: 216 EIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMP 275
           EIDKRF+MLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKD+FHYMAMADNRQRSMP
Sbjct: 184 EIDKRFVMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMP 243

Query: 276 LPDDRSPPRGRALAYPEAVLLVD-----------DKYQYSCDNKDSGVHGWISTDPPIGF 335
           LPDDRSPPRGRALAYPEAVLLVD           DKYQYSCDNKDS VHGWISTDPP+GF
Sbjct: 244 LPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSSVHGWISTDPPVGF 303

Query: 336 WLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFI 395
           WLITPSNE RSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFI
Sbjct: 304 WLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFI 363

Query: 396 YLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVS 455
           YLNSTYDSSDA+QLWED K+Q +IEVQSWPYSFPAS+DFPKSNQRGNI GRLLVKD YVS
Sbjct: 364 YLNSTYDSSDAIQLWEDAKAQETIEVQSWPYSFPASDDFPKSNQRGNIGGRLLVKDRYVS 423

Query: 456 EDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGF 515
           ED+IPANGAFVGLAPPGDVGSWQRESKGYQFWSRADE GYF I+ VR GDYNLYAWVPGF
Sbjct: 424 EDFIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFSINGVRTGDYNLYAWVPGF 483

Query: 516 IGDYRYDSIINITEG----------------ATLWEIGVPDRSAAEFYVPDPNPNYVNKL 575
           IGDYR DS+INI+EG                AT+WEIG+PDRSAAEFYVPDPNP YVNKL
Sbjct: 484 IGDYRNDSLINISEGSEIDVGDIIYEAPREGATMWEIGIPDRSAAEFYVPDPNPGYVNKL 543

Query: 576 YLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQV 635
           YLNHPDKFRQYGLWERY+ELYPDADLVYT+GVSDYTKDWFFAQVTRKTENGTFKGTTWQV
Sbjct: 544 YLNHPDKFRQYGLWERYTELYPDADLVYTIGVSDYTKDWFFAQVTRKTENGTFKGTTWQV 603

Query: 636 KFELDNVDSQATYQLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLY 695
           KF+LDNVD + TY+LR+ALASASLAELQV VNDPK+KP FSSGLIGRDNSIARHGIHGL+
Sbjct: 604 KFKLDNVDRKGTYKLRIALASASLAELQVAVNDPKSKPAFSSGLIGRDNSIARHGIHGLH 663

Query: 696 WLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGL 718
           WLYNV+IP NRLV+GDN IFFTQPRSTSPFQAIMYDYIRLE+PPPPSSAH L
Sbjct: 664 WLYNVDIPANRLVAGDNVIFFTQPRSTSPFQAIMYDYIRLESPPPPSSAHAL 715

[Close]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match: AT1G09890.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 922.9 bits (2384), Expect = 1.5e-268
Identity = 429/611 (70.21%), Postives = 498/611 (81.51%), Query Frame = 0 

Query: 128 QVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVI 187
           +VTLS PDGIVTGI YNG+DNLLEVLN+E NRGYWDLVW  S +A G FDVIK ++FEVI
Sbjct: 7   RVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLVWGGSGTA-GGFDVIKGSNFEVI 66

Query: 188 VENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGE 247
           V+NE+Q+ELSFTRKWD S EGK VPL IDKRF+ML GSSGFY+YAIY+HLKEWP F+L E
Sbjct: 67  VKNEEQIELSFTRKWDPSQEGKAVPLNIDKRFVMLSGSSGFYTYAIYEHLKEWPAFSLAE 126

Query: 248 TRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLL-----------VD 307
           TR+AFKLRK++FHYMA+ D+RQR MPLPDDR P RG+ALAYPEAVLL           VD
Sbjct: 127 TRIAFKLRKEKFHYMAVTDDRQRFMPLPDDRLPDRGQALAYPEAVLLVNPLESQFKGEVD 186

Query: 308 DKYQYSCDNKDSGVHGWISTD-PPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 367
           DKYQYSC+NKD  VHGWI T+ P +GFWLITPS+E R+GGP KQNLTSHVGPT LAVFIS
Sbjct: 187 DKYQYSCENKDITVHGWICTEQPSVGFWLITPSHEYRTGGPQKQNLTSHVGPTALAVFIS 246

Query: 368 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLN-STYDSSDALQLWEDGKSQASIEVQSWPYS 427
           AHYTGEDLVPK   GEAWKKVFGPVF+YLN ST D +D L LW+D KSQ ++E +SWPYS
Sbjct: 247 AHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDPLWLWQDAKSQMNVEAESWPYS 306

Query: 428 FPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFW 487
           FPAS+D+ K+ QRGN+ GRLLV+D YV +D+I AN  +VGLA PG  GSWQRE K YQFW
Sbjct: 307 FPASDDYVKTEQRGNVVGRLLVQDRYVDKDFIAANRGYVGLAVPGAAGSWQRECKEYQFW 366

Query: 488 SRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINIT----------------EGA 547
           +R DE+G+F I  +RPG YNLYAW+PGFIGDY+YD +I IT                 GA
Sbjct: 367 TRTDEEGFFYISGIRPGQYNLYAWIPGFIGDYKYDDVITITSGCYIYVEDLVYQPPRNGA 426

Query: 548 TLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGV 607
           TLWEIG PDRSAAEFYVPDPNP Y+N LY NHPD+FRQYGLWERY+ELYPD DLVY VG 
Sbjct: 427 TLWEIGFPDRSAAEFYVPDPNPKYINNLYQNHPDRFRQYGLWERYAELYPDKDLVYVVGS 486

Query: 608 SDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVN 667
           SDY KDWF+AQVTRK +N T++GTTWQ+KFEL N+D   +Y LRVA+ASA+ +ELQ+ VN
Sbjct: 487 SDYRKDWFYAQVTRKKDNKTYQGTTWQIKFELKNIDKNHSYTLRVAIASATFSELQIRVN 546

Query: 668 DPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQA 710
           +  A P+F+SGLIGRDNSIARHGIHGLYWL+NV + G++L+ G+NT+F TQPRSTSPFQ 
Sbjct: 547 NANASPMFTSGLIGRDNSIARHGIHGLYWLFNVEVAGSKLLEGENTLFLTQPRSTSPFQG 606

[Close]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match: AT1G09910.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 837.4 bits (2162), Expect = 8.6e-243
Identity = 391/612 (63.89%), Postives = 469/612 (76.63%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           +QVTLS P GI+TGI YNG+DN+LEV N E+NRGYWDL WN      G FDVI    F V
Sbjct: 65  LQVTLSKPGGIITGIEYNGIDNVLEVRNKETNRGYWDLHWN-EPGGKGIFDVISGVTFRV 124

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           IVE E+QVE+SF R WD SLEGK +PL IDKRFIMLRGSSG YSY IY+HLK+WPGF LG
Sbjct: 125 IVETEEQVEISFLRTWDPSLEGKYIPLNIDKRFIMLRGSSGVYSYGIYEHLKDWPGFELG 184

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLL-----------V 306
           ETR+AFKLRKD+FHYMA+AD+R+R MP PDD    R + L Y EA LL           V
Sbjct: 185 ETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPRLQGEV 244

Query: 307 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
           DDKYQYSC+NKD  VHGWIS DPP+GFW ITPSNE RSGGP+KQNLTSHVGPTTLAVF S
Sbjct: 245 DDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHS 304

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
            HY G+ ++P+   GE WKKV+GPVFIYLNST +  D L LW+D K +   EV+ WPYSF
Sbjct: 305 THYAGKTMMPRFEHGEPWKKVYGPVFIYLNSTANGDDPLCLWDDAKIKMMAEVERWPYSF 364

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
            AS+D+PKS +RG   GRLL++D +++ D I A GA+VGLAPPGD GSWQ E KGYQFW+
Sbjct: 365 VASDDYPKSEERGTARGRLLIRDRFINNDLISARGAYVGLAPPGDSGSWQIECKGYQFWA 424

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINIT----------------EGAT 546
            ADE GYF I +VRPG+YNLYAWVP FIGDY   +I+ +T                +G T
Sbjct: 425 IADEAGYFSIGNVRPGEYNLYAWVPSFIGDYHNGTIVRVTSGCMIEMGDIVYEPPRDGPT 484

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVS 606
           LWEIG+PDR A+EF++PDP+P  VN++ ++H D+FRQYGLW++Y+++YP+ DLVYTVGVS
Sbjct: 485 LWEIGIPDRKASEFFIPDPDPTLVNRVLVHHQDRFRQYGLWKKYTDMYPNDDLVYTVGVS 544

Query: 607 DYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVND 666
           DY +DWFFA V RK +    +GTTWQ+ F L+N+D +A Y+LRVA+ASA+LAELQ+ +ND
Sbjct: 545 DYRRDWFFAHVPRK-KGDVHEGTTWQIIFNLENIDQKANYKLRVAIASATLAELQIRIND 604

Query: 667 PKA-KPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQA 711
            +A +P+F++GLIGRDNSIARHGIHG+Y LY VNIPGNRLV GDNTIF  QPR   PFQ 
Sbjct: 605 AEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNIPGNRLVQGDNTIFLKQPRCNGPFQG 664

[Close]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match: AT4G24430.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 825.9 bits (2132), Expect = 2.6e-239
Identity = 387/624 (62.02%), Postives = 480/624 (76.92%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSAS--ATGSFDVIKATDF 186
           V+VT+S PDG VTGI Y GVDNLLE  N++ NRGYWDLVW+   +   TG  + IK T F
Sbjct: 23  VKVTISKPDGFVTGISYQGVDNLLETHNEDFNRGYWDLVWSDEGTPGTTGKSERIKGTSF 82

Query: 187 EVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFN 246
           EV+VENE+ VE+SF+RKWD SL+  + P+ +DKRFIM +  +GFYSYAI++HL EWP FN
Sbjct: 83  EVVVENEELVEISFSRKWDSSLQDSIAPINVDKRFIMRKDVTGFYSYAIFEHLAEWPAFN 142

Query: 247 LGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLL---------- 306
           L +TR+ +KLRKD+F YMA+ADNRQR MPLP+DR   RGR LAYPEAVLL          
Sbjct: 143 LPQTRIVYKLRKDKFKYMAIADNRQRKMPLPEDRLGKRGRPLAYPEAVLLVHPVEDEFKG 202

Query: 307 -VDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVF 366
            VDDKY+YS +NKD  VHGWIS +  +G W I PSNE RSGG  KQNLTSHVGP +LA+F
Sbjct: 203 EVDDKYEYSSENKDLKVHGWISHNLDLGCWQIIPSNEFRSGGLSKQNLTSHVGPISLAMF 262

Query: 367 ISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYD-SSDALQLWEDGKSQASIEVQSWP 426
           +SAHY GED+V K+ AG++WKKVFGPVF YLN   D +SD L LW+D K+Q   EVQSWP
Sbjct: 263 LSAHYAGEDMVMKVKAGDSWKKVFGPVFTYLNCLPDKTSDPLSLWQDAKNQMLTEVQSWP 322

Query: 427 YSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQ 486
           Y FPASEDFP S++RG ISGRLLV D ++S+D++PANGAFVGLAPPG+VGSWQ ESKGYQ
Sbjct: 323 YDFPASEDFPVSDKRGCISGRLLVCDKFLSDDFLPANGAFVGLAPPGEVGSWQLESKGYQ 382

Query: 487 FWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINIT----------------E 546
           FW+ AD DGYF I+ +R G+YNL  +V G+IGDY+Y+ +INIT                +
Sbjct: 383 FWTEADSDGYFAINDIREGEYNLNGYVTGWIGDYQYEQLINITAGCDIDVGNIVYEPPRD 442

Query: 547 GATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTV 606
           G T+WEIG+PDRSAAEF+VPDPNP Y+NKLY+ HPD+FRQYGLWERY+ELYP  DLV+T+
Sbjct: 443 GPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIGHPDRFRQYGLWERYTELYPKEDLVFTI 502

Query: 607 GVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVG 666
           GVSDY KDWFFA VTRK  + T++ TTWQ+KF+L+NV    TY++R+ALA+A++AELQV 
Sbjct: 503 GVSDYKKDWFFAHVTRKMGDDTYQKTTWQIKFKLENVQKSCTYKIRIALATANVAELQVR 562

Query: 667 VND---PKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRST 717
           +ND    K  P+F++G+IG DN+IARHGIHG+Y LYNV++P  +LV GDNT+F TQ  +T
Sbjct: 563 MNDDDTEKTTPIFTTGVIGHDNAIARHGIHGIYRLYNVDVPSEKLVEGDNTLFLTQTMTT 622

[Close]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match: AT1G09880.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 782.3 bits (2019), Expect = 3.3e-226
Identity = 373/618 (60.36%), Postives = 463/618 (74.92%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLE-VLNDESNRGYWDLVWN----PSASATGSFDVIKA 186
           +Q+TLSNP+G VTGI+YNG+DN+L    N E +RGYWD+VWN     +    G+ D I+A
Sbjct: 6   LQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAKKTKGTLDRIEA 65

Query: 187 TDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWP 246
           T  EVI +N++++ELSFTR W+ S     VP+ IDKRF+ML+ SSGFYSYAI++ L+ WP
Sbjct: 66  TKMEVITQNDEKIELSFTRTWNTS-STTAVPVNIDKRFVMLQNSSGFYSYAIFERLQGWP 125

Query: 247 GFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLL------- 306
              L   RL FKL K +FHYMA++D+RQR MP+PDDR PPRG+ LAYPEAV L       
Sbjct: 126 AVELDNMRLVFKLNKKKFHYMAISDDRQRYMPVPDDRVPPRGQPLAYPEAVQLLDPIEPE 185

Query: 307 ----VDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTL 366
               VDDKY+YS ++KD  VHGWIST+  +GFW ITPSNE RS GP+KQ L SHVGPT L
Sbjct: 186 FKGEVDDKYEYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSAGPLKQFLGSHVGPTNL 245

Query: 367 AVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQS 426
           AVF S HY G DL+     GEAWKKVFGPVFIYLNS     D L LW + K+Q  IE + 
Sbjct: 246 AVFHSTHYVGADLIMSFKNGEAWKKVFGPVFIYLNSFPKGVDPLLLWHEAKNQTKIEEEK 305

Query: 427 WPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKG 486
           WPY+F AS+DFP S+QRG++SGRLLV+D ++S + IPANG++VGLA PGDVGSWQRE KG
Sbjct: 306 WPYNFTASDDFPASDQRGSVSGRLLVRDRFISSEDIPANGSYVGLAAPGDVGSWQRECKG 365

Query: 487 YQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINIT--------------- 546
           YQFWS+ADE+G F I++VR G YNLYA+ PGFIGDY  D++ +I+               
Sbjct: 366 YQFWSKADENGSFSINNVRSGRYNLYAFAPGFIGDYHNDTVFDISPGSKISLGDLVYEPP 425

Query: 547 -EGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVY 606
            +G+TLWEIGVPDRSAAEFY+PDPNP++VNKLYLNH DK+RQYGLWERYSELYPD D+VY
Sbjct: 426 RDGSTLWEIGVPDRSAAEFYIPDPNPSFVNKLYLNHSDKYRQYGLWERYSELYPDEDMVY 485

Query: 607 TVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQAT--YQLRVALASASLAE 666
            V + DY+K+WFF QVTRK  NG +KGTTWQ++F+ D+     T  ++LR+ALA++++AE
Sbjct: 486 NVDIDDYSKNWFFMQVTRKQANGGYKGTTWQIRFQFDDKMKNVTGNFKLRIALATSNVAE 545

Query: 667 LQVGVNDPKA-KPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPR 710
           LQV VND  A  P+F +  IGRDN+IARHGIHGLYWLY+VN+P   L  G+NTI+ TQ  
Sbjct: 546 LQVRVNDLSADPPLFRTEQIGRDNTIARHGIHGLYWLYSVNVPAASLHVGNNTIYLTQAL 605

[Close]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match: AT2G22620.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 711.4 bits (1835), Expect = 7.1e-205
Identity = 335/611 (54.83%), Postives = 433/611 (70.87%), Query Frame = 0 

Query: 127 VQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEV 186
           VQVT SNP+G++TGI+Y+G+DN+L+   D+  RGYWD+VW        + D ++ T FE+
Sbjct: 69  VQVTFSNPEGLITGIKYHGIDNVLDDKIDD--RGYWDVVWYEPEKKQKT-DKLEGTKFEI 128

Query: 187 IVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLG 246
           I +NE+Q+E+SFTR W +S  G LVPL +DKR+I+  G SG Y Y I + L+ WP  ++ 
Sbjct: 129 ITQNEEQIEISFTRTWTISRRGSLVPLNVDKRYIIRSGVSGLYMYGILERLEGWPDVDMD 188

Query: 247 ETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLL-----------V 306
           + R+ FKL   +F +MA++D+RQRSMP   DR     ++LAY EAVLL           V
Sbjct: 189 QIRIVFKLNPKKFDFMAISDDRQRSMPSMADRE--NSKSLAYKEAVLLTNPSNPMFKGEV 248

Query: 307 DDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFIS 366
           DDKY YS ++KD+ VHGWIS+DPP+GFW+ITPS+E R GGP+KQ+LTSH GP TL++F S
Sbjct: 249 DDKYMYSMEDKDNNVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTS 308

Query: 367 AHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSF 426
            HY G+++      GE WKKVFGPV  YLNS       L+LW D K Q + EV+SWPY F
Sbjct: 309 THYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWRDAKRQMAAEVKSWPYDF 368

Query: 427 PASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWS 486
             SED+P  +QRG + G+ L+KDSYVS   I    AFVGLAP G+ GSWQ ESKGYQFW+
Sbjct: 369 ITSEDYPLRHQRGTLEGQFLIKDSYVSRLKIYGKFAFVGLAPIGEAGSWQTESKGYQFWT 428

Query: 487 RADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINITEGA----------------T 546
           +AD  G F+I++VR G+Y+LYAW  GFIGDY+Y+  I IT G+                T
Sbjct: 429 KADRRGRFIIENVRAGNYSLYAWGSGFIGDYKYEQNITITPGSEMNVGPLVYEPPRNGPT 488

Query: 547 LWEIGVPDRSAAEFYVPDPNPNYVNKLYLNH-PDKFRQYGLWERYSELYPDADLVYTVGV 606
           LWEIGVPDR+A EFY+PDP P  +NKLY+N   D+FRQYGLW+RY++LYP  DLVYT+GV
Sbjct: 489 LWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTIGV 548

Query: 607 SDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYQLRVALASASLAELQVGVN 666
           SDY  DWFFA V R   N T++ TTWQ+ F L NV+    Y LR+ALASA+ +ELQ+ +N
Sbjct: 549 SDYRSDWFFAHVARNVGNDTYQPTTWQIIFNLKNVNRIGRYTLRIALASAADSELQIRIN 608

Query: 667 DPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQA 710
           DPK+  +F++G IG+DN+IARHGIHGLY LY++++ GN L  GDNTIF TQ RS +PFQ 
Sbjct: 609 DPKSDAIFTTGFIGKDNAIARHGIHGLYRLYSIDVAGNLLSVGDNTIFLTQTRSRTPFQG 668

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g01810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B8N5T61.0e-2224.31Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 /... [more]
Q5B5P11.5e-1323.01Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / AT... [more]
BLAST of Cp4.1LG07g01810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023537007.10.095.65probable rhamnogalacturonate lyase B isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_023001855.10.094.02rhamnogalacturonate lyase B-like isoform X2 [Cucurbita maxima][more]
XP_022951036.10.094.03probable rhamnogalacturonate lyase B isoform X2 [Cucurbita moschata][more]
KAG7020263.10.094.03rhiE [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023001852.10.092.38probable rhamnogalacturonate lyase B isoform X1 [Cucurbita maxima] >XP_023001853... [more]
BLAST of Cp4.1LG07g01810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KMB30.094.02Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV... [more]
A0A6J1GGG50.094.03Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111454003 PE=3 ... [more]
A0A6J1KHT00.092.38Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV... [more]
A0A6J1GGK00.092.39Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111454003 PE=3 ... [more]
A0A6J1BSU20.078.23Rhamnogalacturonan endolyase OS=Momordica charantia OX=3673 GN=LOC111005034 PE=3... [more]
BLAST of Cp4.1LG07g01810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09890.11.5e-26870.21Rhamnogalacturonate lyase family protein [more]
AT1G09910.18.6e-24363.89Rhamnogalacturonate lyase family protein [more]
AT4G24430.12.6e-23962.02Rhamnogalacturonate lyase family protein [more]
AT1G09880.13.3e-22660.36Rhamnogalacturonate lyase family protein [more]
AT2G22620.17.1e-20554.83Rhamnogalacturonate lyase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029413Rhamnogalacturonan lyase, domain IIPFAMPF14686fn3_3coord: 449..519
e-value: 1.1E-24
score: 86.0
IPR029413Rhamnogalacturonan lyase, domain IICDDcd10316RGL4_Mcoord: 426..519
e-value: 9.13117E-33
score: 119.661
IPR029411Rhamnogalacturonan lyase, domain IIIPFAMPF14683CBM-likecoord: 519..706
e-value: 3.5E-57
score: 193.0
IPR014718Glycoside hydrolase-type carbohydrate-bindingGENE3D2.70.98.10coord: 122..395
e-value: 3.4E-7
score: 31.9
NoneNo IPR availableGENE3D2.60.40.1120coord: 423..519
e-value: 1.8E-7
score: 33.2
NoneNo IPR availableGENE3D2.60.120.260coord: 520..707
e-value: 1.8E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR32018RHAMNOGALACTURONATE LYASE FAMILY PROTEINcoord: 127..710
NoneNo IPR availablePANTHERPTHR32018:SF8RHAMNOGALACTURONATE LYASE FAMILY PROTEINcoord: 127..710
NoneNo IPR availableCDDcd10320RGL4_Ncoord: 126..393
e-value: 1.73021E-71
score: 231.894
NoneNo IPR availableCDDcd10317RGL4_Ccoord: 521..707
e-value: 1.19865E-57
score: 190.95
IPR010325Rhamnogalacturonate lyasePFAMPF06045Rhamnogal_lyasecoord: 126..297
e-value: 7.5E-80
score: 267.3
IPR011013Galactose mutarotase-like domain superfamilySUPERFAMILY74650Galactose mutarotase-likecoord: 128..387
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 517..707
IPR013784Carbohydrate-binding-like foldSUPERFAMILY49452Starch-binding domain-likecoord: 424..519

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g01810.1Cp4.1LG07g01810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0102210 rhamnogalacturonan endolyase activity
molecular_function GO:0003824 catalytic activity