Cp4.1LG07g00930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g00930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WRKY domain-containing protein
Location	Cp4.1LG07: 392417 .. 392758 (-)
RNA-Seq Expression	Cp4.1LG07g00930
Synteny	Cp4.1LG07g00930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGCGATCCTCCGCCGAACTTCTCCACCGCCGATTCCTCCACTAATTGGACCAGCTCTTCACTCGCCTCTGCCTCCGTCGACGCTGATTACCTTCTCTCCGGCGATAGAGAAACCACTATCCTCACTGAATTCGGATGGAATTTCGACTCCGATGAAGTTCAGCCTTCTCGATTTCTCGACTCCGACCAGATCGCCACCGATGACAACGCCGATTTTGCCGGAACCTCCACCGGTAGTCTACAGAGCCCTGACGTTCCTGTTCCGCTTGCCTCCAATCCTTCATTGTCTTCGAGCTCGAGCGGAGAGCCGCCAGAGAAACAGCCTGAGATTCCGTGA

mRNA sequence

ATGGACCGCGATCCTCCGCCGAACTTCTCCACCGCCGATTCCTCCACTAATTGGACCAGCTCTTCACTCGCCTCTGCCTCCGTCGACGCTGATTACCTTCTCTCCGGCGATAGAGAAACCACTATCCTCACTGAATTCGGATGGAATTTCGACTCCGATGAAGTTCAGCCTTCTCGATTTCTCGACTCCGACCAGATCGCCACCGATGACAACGCCGATTTTGCCGGAACCTCCACCGGTAGTCTACAGAGCCCTGACGTTCCTGTTCCGCTTGCCTCCAATCCTTCATTGTCTTCGAGCTCGAGCGGAGAGCCGCCAGAGAAACAGCCTGAGATTCCGTGA

Coding sequence (CDS)

ATGGACCGCGATCCTCCGCCGAACTTCTCCACCGCCGATTCCTCCACTAATTGGACCAGCTCTTCACTCGCCTCTGCCTCCGTCGACGCTGATTACCTTCTCTCCGGCGATAGAGAAACCACTATCCTCACTGAATTCGGATGGAATTTCGACTCCGATGAAGTTCAGCCTTCTCGATTTCTCGACTCCGACCAGATCGCCACCGATGACAACGCCGATTTTGCCGGAACCTCCACCGGTAGTCTACAGAGCCCTGACGTTCCTGTTCCGCTTGCCTCCAATCCTTCATTGTCTTCGAGCTCGAGCGGAGAGCCGCCAGAGAAACAGCCTGAGATTCCGTGA

Protein sequence

MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRFLDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP

Homology

[Close]

BLAST of Cp4.1LG07g00930 vs. NCBI nr
Match: XP_023537046.1 (probable WRKY transcription factor 57 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217 bits (553), Expect = 1.18e-68
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP
Sbjct: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. NCBI nr
Match: KAG6585238.1 (putative WRKY transcription factor 57, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 7.81e-67
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGD ETTILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDSETTILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATDDNADFAGTST SLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP
Sbjct: 61  LDSDQIATDDNADFAGTSTASLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. NCBI nr
Match: XP_022951063.1 (probable WRKY transcription factor 57 [Cucurbita moschata] >XP_022951064.1 probable WRKY transcription factor 57 [Cucurbita moschata])

HSP 1 Score: 211 bits (538), Expect = 2.22e-66
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGD ETTILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDSETTILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATD NADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP
Sbjct: 61  LDSDQIATDYNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. NCBI nr
Match: XP_023002798.1 (probable WRKY transcription factor 57 [Cucurbita maxima] >XP_023002799.1 probable WRKY transcription factor 57 [Cucurbita maxima])

HSP 1 Score: 208 bits (529), Expect = 5.62e-65
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFST DSS+NWTSSSLASASVDADYLLSGDRET+ILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTNDSSSNWTSSSLASASVDADYLLSGDRETSILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGE PEKQPEIP
Sbjct: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGELPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. NCBI nr
Match: XP_022961702.1 (probable WRKY transcription factor 57 [Cucurbita moschata] >XP_022961703.1 probable WRKY transcription factor 57 [Cucurbita moschata])

HSP 1 Score: 117 bits (292), Expect = 3.43e-29
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 4   DPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRFLDS 63
           D PP+FSTADSST WT+   A  S D+ Y    DR++ +LTEFGWNF S + QP+RFLD 
Sbjct: 8   DSPPSFSTADSSTVWTN---ALPSADSFYFFPADRDSAVLTEFGWNFLSHDAQPTRFLD- 67

Query: 64  DQIATDDNADFAGTS------TGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
                 D  D  GTS      TG LQSPD PVP+ASNPS+SSSSSGEPPEK PEIP
Sbjct: 68  ------DKPDLPGTSALAVDETGGLQSPDAPVPVASNPSMSSSSSGEPPEKLPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL
Match: A0A6J1GGN1 (probable WRKY transcription factor 57 OS=Cucurbita moschata OX=3662 GN=LOC111454025 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.08e-66
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGD ETTILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDSETTILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATD NADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP
Sbjct: 61  LDSDQIATDYNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL
Match: A0A6J1KRH0 (probable WRKY transcription factor 57 OS=Cucurbita maxima OX=3661 GN=LOC111496552 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 2.72e-65
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRF 60
           MDRDPPPNFST DSS+NWTSSSLASASVDADYLLSGDRET+ILTEFGWNFDSDEVQPSRF
Sbjct: 1   MDRDPPPNFSTNDSSSNWTSSSLASASVDADYLLSGDRETSILTEFGWNFDSDEVQPSRF 60

Query: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
           LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGE PEKQPEIP
Sbjct: 61  LDSDQIATDDNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGELPEKQPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL
Match: A0A6J1HAV4 (probable WRKY transcription factor 57 OS=Cucurbita moschata OX=3662 GN=LOC111462394 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.66e-29
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 4   DPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRFLDS 63
           D PP+FSTADSST WT+   A  S D+ Y    DR++ +LTEFGWNF S + QP+RFLD 
Sbjct: 8   DSPPSFSTADSSTVWTN---ALPSADSFYFFPADRDSAVLTEFGWNFLSHDAQPTRFLD- 67

Query: 64  DQIATDDNADFAGTS------TGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
                 D  D  GTS      TG LQSPD PVP+ASNPS+SSSSSGEPPEK PEIP
Sbjct: 68  ------DKPDLPGTSALAVDETGGLQSPDAPVPVASNPSMSSSSSGEPPEKLPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL
Match: A0A6J1K4F6 (probable WRKY transcription factor 57 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492193 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.54e-28
Identity = 68/116 (58.62%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 4   DPPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRFLDS 63
           D PP+FSTADSST WT+   A  S D+ Y    DR++ +LTEFGWNF S + QP+RFLD 
Sbjct: 8   DSPPSFSTADSSTIWTN---ALPSADSFYFFPADRDSAVLTEFGWNFLSQDAQPTRFLD- 67

Query: 64  DQIATDDNADFAGTS------TGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIP 113
                 D  D  GTS      TG LQSPD PVP+AS PS+SSSSSGEPPEK PEIP
Sbjct: 68  ------DKPDLPGTSEPAVDETGGLQSPDAPVPVASIPSMSSSSSGEPPEKLPEIP 113

[Close]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL
Match: A0A5A7VBW9 (Putative WRKY transcription factor 57 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00580 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.68e-18
Identity = 58/124 (46.77%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   PPPNFSTADSSTNWTSSSLASASVDADYLLSGDRETTILTEFGWNFDSDEVQPSRFLDSD 64
           PPP FSTADSS         S S +A +    D ++TILT+FGWNF S + QPSRF DS 
Sbjct: 8   PPPPFSTADSS---------STSSNALFFFPPDSDSTILTQFGWNFHSLQPQPSRFHDSH 67

Query: 65  QIATDDNADFAGTSTGSLQSP----------------DVPVPLASNPSLSSSSSGEPPEK 112
            I    ++DF  TST +  +                 D P+PL SNPSLSSSSSG+PP+K
Sbjct: 68  PI----HSDFPATSTTTTTTTTITTTPPLIEDSAGLSDAPLPLPSNPSLSSSSSGDPPDK 118

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g00930 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g00930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537046.1	1.18e-68	100.00	probable WRKY transcription factor 57 [Cucurbita pepo subsp. pepo]	[more]
KAG6585238.1	7.81e-67	98.23	putative WRKY transcription factor 57, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022951063.1	2.22e-66	98.23	probable WRKY transcription factor 57 [Cucurbita moschata] >XP_022951064.1 proba...	[more]
XP_023002798.1	5.62e-65	96.46	probable WRKY transcription factor 57 [Cucurbita maxima] >XP_023002799.1 probabl...	[more]
XP_022961702.1	3.43e-29	59.48	probable WRKY transcription factor 57 [Cucurbita moschata] >XP_022961703.1 proba...	[more]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGN1	1.08e-66	98.23	probable WRKY transcription factor 57 OS=Cucurbita moschata OX=3662 GN=LOC111454...	[more]
A0A6J1KRH0	2.72e-65	96.46	probable WRKY transcription factor 57 OS=Cucurbita maxima OX=3661 GN=LOC11149655...	[more]
A0A6J1HAV4	1.66e-29	59.48	probable WRKY transcription factor 57 OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A6J1K4F6	2.54e-28	58.62	probable WRKY transcription factor 57 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7VBW9	6.68e-18	46.77	Putative WRKY transcription factor 57 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Cp4.1LG07g00930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g00930.1	Cp4.1LG07g00930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding