Cp4.1LG06g09720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g09720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRNA-binding protein 24 isoform X3
LocationCp4.1LG06: 7882618 .. 7886377 (-)
RNA-Seq ExpressionCp4.1LG06g09720
SyntenyCp4.1LG06g09720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATTTTATTTTATTTTATTTTTTATTTATAATTTGTTGCTGTCAAAGTTTTGCTTTCCCTTCCCTCCTTCCTTCACTTTCTCCTTTGTTCTCATCTCTGACCTAATTCTCTTCTTCTTCTTCCTCTTCACAAACAAAAACTTGAAAGATTTTGTTGGGTTTTGAAGATCAAACAACTTTTGTTTTGAAAATCGAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATAGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTTGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTAATCATCTTCTTCTAATTTCTCCATCTTGTTGTTCTTGTTCATGTTCTTCTTCCATTTACTCTTTTCCTTTTTCGATTTTAGGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCTAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGGTATATTCACGTTTCTATACTCAGATCTATTGATTTTGATATTGCATGATATTGTCTACTTTGAATATAAAGCTCTCGTGACTTTACTTTTAGTTTTATCGAGATAGTGTTTGTTACTGTGAGATCCCACCTCGGTTGGAGAGGAGAACGAAACACCCTTTATTAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAATACCTTAAGGGTAAGCTCGAAAGGGAAAGCCCAAAGAGAACAGTATCTACTAGCGGTCACTTTAAATACCCTTTATAAGGACAAGCAAACCTCTCTCTAGCAGATGCGTTTCAAAATCTTGAAGGTAAGCCCGAGATAGTGTCTGTTACTGTAAGATCTCACACTCTCGATAAGGGTTTAGAAACCTCTCTCTAGTAGACGCGTTTTAAAAGCTTTGAGGGTAAACTCTAAAAGGACAATATCTGCTAGCGGTGAGTTTAGATCGTTACAGTAAAGTGTATACTTACGATCATTTAGATGTTTGTTTAAGTGTTTGATTTTGTGTTTAAAGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCTCTCTACAACGTGACATGCCAACTCATATATTCACTTTAATTTATGACTAAGAATAAAGTTTTTATTTTTGCTTCATAATTACTCTAAATTAATTCATATCATTTCCTATATTCATGTAATGCATTAAATTCTCCTTTCCTTTTGTTCTTTCCATTCCTTTGTATTAATGCATGCATGGGATTGCATGGATTTGTGAATAATTGGGTAATTATTATTATTGTTGCTTGTTTAGGTACTCTTCGTACTCGCCCGACTACGCTTACCCCACGGTTTGTACAAACCTTTCTTGTTCTTCAGATTATTTTTAGTTTTGAGTATCATTGTTAGGAATGACGACTCTCCACGATCGTATGATATTGTCCACTTTGAGCTTAAGCTCTCGTGGGTTTGCTTTGGACTTTCTAAAAACCTCGTATCGATGGAGATATATTCCTTACGTATAAATCCATGATCATTCCTGTGAGATATCACATTGATTGGGGAGGAGAAACGAAACACCCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAAACATTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGAAAAATATCTGCTAGAGGTGTGCTTAAGCCGTTATAAATGGTATCAGAGCCAGACACTGGGCGATGTGTCAGGGAGGAGGTTGAGCTCCGAAGGGGGTGGACAATAGACAATGTGTCAGCATTCTTGCTGGCCACAAAGAGGGGTGGATTTGAATGGGTCCCACATTGATTGGAGAAGGGGATGAGTGCCAACAAGGACATTGGGTCTTGAAGGGAGTGGATTGTGAGATCCCACATTGGTTGAGGAGGAGAACGAGACACCCTTTATAAGGGTGTAGAAACCATTTCTTATCAAACCCGTTTTTAAAACCTTAAAGGGAAAACCCAGAAGGAAAAATCTCAAAAAGAACAATATCTGCTAGTGGTGTGCTTGACCGTTACAATTCCTTAAATTAGCCAATGTGAGATTGCATCCCGACAATCTTTAACCATCATGAAATTCACAAAGAATAGTTGAAGTAATGGAATGGAATAAATATTTAAGAAGAGAAAAGAAACAAAATAAATTTAAAGGGTTTTGAATAAGGACGGTAAAATTTTAATATTCCTTAGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAGTGAAAGTTAAAAGAGACCAAATCTGTGCTTCCTTCTCTTGTCGTTTGACCCGACAGTTTTTGTTTCTACATTTATTATTTTGTAACAGTAAATAACTTTTTTTACAGTTTTTTTTTTATGGTTTTATTGTTACGGTTTTTGTTACACGTTCTTTCATGCATGTAATCATGTAAGCTCAAACTTTAAAAAAAAAACAAAACAAAACAAAAGCTTTAAAATTAAAATAGTCGAGATTTCTACACCTTTATAAAAAAATGTTTCAGAGTCCAGTGTCCTTGTTTACACACCGCCTCGTGTCCTCAACTTTCTTGCTGACATATTGTCCCGTGTCTAGCATTGATGTCATCTATAACCGCCCAAGCCCATCGCTAGCAGATATTGTCCTCTTTTGAATTTTCATTCTGAACTCTCCCTCAAAGTTTTAAAACGGATTTGTTAAGAAGAGTTTCCACACTCTTATAAAGAATGTTTTGTTCTGCTTCTCAATGACGTGGGATCTGAGTTATGTTGAGTTGGAATTTTTTTTTGGATTTGGGTTGGTTAGATTGATGGCTCGATTAACCTAAATACAACTTACAACCGAACCCCAAGTTGGGTTGAGGTTGGGTTGACGGATTTTTTTAAATTATTTTAAAAAATTTGTTTATTTCCCTAGCACATTACATTAATAACTAAATTTTTATAAATTTAAAATATCAAACATTTATAAGCAACAATATATCAATAACATTAGTAAAAAAACGTCAAATATTTTTTGTTTCAAAAAATTTCACTTAAACGGAAAAAAAAATTATAATTCAACCCGACCTTTATTATATTATTATTTATATGAGGGGTTTTTTAATTAATTTCCAGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACTTTGCCATCAGGTTCGTCTCCCCGCTCTCGTCTCGTTGGATTAGTTTAA

mRNA sequence

ATATATTTTATTTTATTTTATTTTTTATTTATAATTTGTTGCTGTCAAAGTTTTGCTTTCCCTTCCCTCCTTCCTTCACTTTCTCCTTTGTTCTCATCTCTGACCTAATTCTCTTCTTCTTCTTCCTCTTCACAAACAAAAACTTGAAAGATTTTGTTGGGTTTTGAAGATCAAACAACTTTTGTTTTGAAAATCGAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATAGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTTGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCTAATTGCAATCTTGCTTCTCTCGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACTTTGCCATCAGGTTCGTCTCCCCGCTCTCGTCTCGTTGGATTAGTTTAA

Coding sequence (CDS)

ATGACTCCATCTAACATAGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTTGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCTAATTGCAATCTTGCTTCTCTCGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACTTTGCCATCAGGTTCGTCTCCCCGCTCTCGTCTCGTTGGATTAGTTTAA

Protein sequence

MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSPRSRLVGLV
Homology
[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-27
Identity = 90/236 (38.14%), Postives = 122/236 (51.69%), Query Frame = 0 

Query: 2   TPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+T K+ M ++F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAMRACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTG-FGGN 121
           VTF++  AA RAC D+ P+I+GRRANCNLAS       L G  R    ++S Q G   GN
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLAS-------LGGRLRKSPTMTSPQQGPKNGN 122

Query: 122 ------VGSAFHSTPTFP--------HYAIHQGIPYNLY---------GVEESVSLRGGQ 181
                 VG+  HS   +P            HQ +P+  Y            + V   GG 
Sbjct: 123 RATPPHVGN--HSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGT 182

Query: 182 TVEKSYYNVYGGATAQ-----YPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG 209
            +   Y  +     +Q     Y  +  G G ++ GAA+    FY  + + +    G
Sbjct: 183 YMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIG 229

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.2e-25
Identity = 81/192 (42.19%), Postives = 98/192 (51.04%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGS---AFHST 131
           RAC D  P+IDGR+AN NLA L  K               S QTGF   V     AF   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKP-------------RSIQTGFTIGVQQLHPAFIQR 126

Query: 132 P--TFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILS 191
           P    PHY   Q I      ++ SV +        S Y  Y  A+  Y  Y T       
Sbjct: 127 PFGLTPHYVYPQAI------IQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYDQYP 179

Query: 192 GAAAAAAAFYPY 199
            AA+ AA F  Y
Sbjct: 187 YAASPAAGFVGY 179

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-24
Identity = 85/219 (38.81%), Postives = 106/219 (48.40%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++ YFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 72  RACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGSAF----HS 131
           RAC D  P+IDGR+AN NLA L          G   RV+    T     +  AF    + 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYL----------GAKPRVMQPGFTFGVPQIHPAFIQRPYG 126

Query: 132 TPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILSG 191
            PT  HY   Q        +          T    Y +  G A AQY    T        
Sbjct: 127 IPT--HYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAAT-------A 186

Query: 192 AAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 227
           AAAAA   YPY      +   A G+   +G  GY +Q P
Sbjct: 187 AAAAAYEQYPY-----AASPAATGYVAAAG-YGYAMQQP 200

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 85/215 (39.53%), Postives = 105/215 (48.84%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++ YFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGSAFHSTPTF 131
           RAC D  P+IDGR+AN NLA L  K   +   G  F V            G   H    +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKP-RIMQPGFAFGVQQLHPALIQRPFGIPAHY--VY 126

Query: 132 PHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILSGAAAA 191
           P   +  G+      V   V           Y +  G A AQY           S AAAA
Sbjct: 127 PQAFVQPGV------VIPHVQPTAAAASTTPYIDYTGAAYAQY-----------SAAAAA 186

Query: 192 AAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 227
           AAA   Y Q+   +   A G+    G  GY VQ P
Sbjct: 187 AAAAAAYDQYPYAASPAAAGYVTAGG-YGYAVQQP 200

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-23
Identity = 85/215 (39.53%), Postives = 105/215 (48.84%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGSAFHSTPTF 131
           RAC D  P+IDGR+AN NLA L  K   +   G  F V            G   H    +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKP-RIMQPGFAFGVQQLHPALIQRPFGIPAHY--VY 126

Query: 132 PHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILSGAAAA 191
           P   +  G+      V   V           Y +  G A AQY           S AAAA
Sbjct: 127 PQAFVQPGV------VIPHVQPTAAAASTTPYIDYTGAAYAQY-----------SAAAAA 186

Query: 192 AAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 227
           AAA   Y Q+   +   A G+   +G   Y VQ P
Sbjct: 187 AAAAAAYDQYPYAASPAAAGYV-TTGGYSYAVQQP 200

[Close]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 487 bits (1253), Expect = 2.93e-172
Identity = 250/276 (90.58%), Postives = 250/276 (90.58%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGGRNFR 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGGRNFR
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGRNFR 120

Query: 121 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYG 180
           VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNVYG
Sbjct: 121 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNVYG 180

Query: 181 GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH 240
           GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH
Sbjct: 181 GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH 240

Query: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 273

[Close]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match: XP_023535743.1 (RNA-binding protein 38-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484 bits (1247), Expect = 2.01e-171
Identity = 249/275 (90.55%), Postives = 249/275 (90.55%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGGRNFR 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGGRNFR
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGRNFR 120

Query: 121 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYG 180
           VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNVYG
Sbjct: 121 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNVYG 180

Query: 181 GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH 240
           GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH
Sbjct: 181 GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH 240

Query: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 263
           LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 272

[Close]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 481 bits (1237), Expect = 8.65e-170
Identity = 249/278 (89.57%), Postives = 250/278 (89.93%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 275

[Close]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match: KAG6592286.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479 bits (1232), Expect = 4.82e-169
Identity = 248/277 (89.53%), Postives = 249/277 (89.89%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG-RNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG RNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVY 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNVY
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH 240
           GGATAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH
Sbjct: 181 GGATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH 240

Query: 241 HLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           HLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 HLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 274

[Close]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match: XP_022930180.1 (RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-binding protein 38 isoform X2 [Cucurbita maxima])

HSP 1 Score: 478 bits (1231), Expect = 5.92e-169
Identity = 248/277 (89.53%), Postives = 249/277 (89.89%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 263
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 274

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 481 bits (1237), Expect = 4.19e-170
Identity = 249/278 (89.57%), Postives = 250/278 (89.93%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 275

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 481 bits (1237), Expect = 4.19e-170
Identity = 249/278 (89.57%), Postives = 250/278 (89.93%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG 275

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match: A0A6J1ID09 (RNA-binding protein 38 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 2.86e-169
Identity = 248/277 (89.53%), Postives = 249/277 (89.89%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 263
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 274

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match: A0A6J1EW94 (RNA-binding protein 38 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 2.86e-169
Identity = 248/277 (89.53%), Postives = 249/277 (89.89%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL------------EKKKWELTGGG--RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL            EKKKWELTGGG  RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNV 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNV
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 240

Query: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 263
           HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS 274

[Close]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match: A0A6J1IF55 (RNA-binding protein 38 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 470 bits (1210), Expect = 3.78e-166
Identity = 242/268 (90.30%), Postives = 243/268 (90.67%), Query Frame = 0 

Query: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASL----EKKKWELTGGGRNFRVLSSFQTG 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASL     K      GGGRNFRVLSSFQTG
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVLSSFQTG 120

Query: 121 FGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPM 180
           FGGNVGSAFHSTPTFPHYAIHQGIPYNLYG     S         SYYNVYGGATAQYPM
Sbjct: 121 FGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS---SYSPDYAYPTSYYNVYGGATAQYPM 180

Query: 181 YGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAAL 240
           YGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAAL
Sbjct: 181 YGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAAL 240

Query: 241 NSTPTTFPQHYAAPPMSLPPTPPTLPSG 264
           NSTPTTFPQHYAAPPMSLPPTPPTLPSG
Sbjct: 241 NSTPTTFPQHYAAPPMSLPPTPPTLPSG 265

[Close]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 216.1 bits (549), Expect = 3.6e-56
Identity = 133/259 (51.35%), Postives = 164/259 (63.32%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASL----EKKKWELTG--GGRNFRVLSSFQTGFGGNVGSAF 131
           +ACVD APVIDGRRANCNLA+      K    + G  GGR  +V S F+T F G   +A 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPFKTHF-GTAATAI 122

Query: 132 HSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGIL 191
            S   F HY +    P+       S S+      + SYYNVYGGATAQ+PMYG+GP  + 
Sbjct: 123 PSPLPFSHYTLPYTNPFGF----SSYSMDYNYPTQ-SYYNVYGGATAQHPMYGSGP--MT 182

Query: 192 SGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTFP 251
             AAA AA FYPY QF EG+G             GY  + YP+H+  YSA   + P    
Sbjct: 183 GVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAPGGNYP---- 237

Query: 252 QHYAAPPMSLPPTPPTLPS 264
            H+   P+SL P+ P +PS
Sbjct: 243 -HHNGSPVSLAPS-PVIPS 237

[Close]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-56
Identity = 135/260 (51.92%), Postives = 164/260 (63.08%), Query Frame = 0 

Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASL----EKKKWELTG--GGRNFRVLSSFQTGFGGNVGSAF 131
           +ACVD APVIDGRRANCNLA+      K    + G  GGR  +V S F+T F G   +A 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPFKTHF-GTAATAI 122

Query: 132 HSTPTFPHYAIHQGIPY-NLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGI 191
            S   F HY     +PY N +G     S         SYYNVYGGATAQ+PMYG+GP  +
Sbjct: 123 PSPLPFSHYT----LPYTNPFGFS---SYSMDYNYPTSYYNVYGGATAQHPMYGSGP--M 182

Query: 192 LSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTF 251
              AAA AA FYPY QF EG+G             GY  + YP+H+  YSA   + P   
Sbjct: 183 TGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAPGGNYP--- 236

Query: 252 PQHYAAPPMSLPPTPPTLPS 264
             H+   P+SL P+ P +PS
Sbjct: 243 --HHNGSPVSLAPS-PVIPS 236

[Close]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-46
Identity = 125/242 (51.65%), Postives = 146/242 (60.33%), Query Frame = 0 

Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLEKKKWELT-----GGGR--NFRV-LSSFQTGFGGNVG 130
             ACVDA PVIDGRRANCNLASL  ++ + +     GGGR  N RV +S+ QTGFG    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127

Query: 131 SAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGAT-AQYPMYG--T 190
                 PTF HY     +P NL+G   S       +   + Y +YG  +  QY +YG   
Sbjct: 128 P---QPPTFTHY---PHLPLNLFGY--SPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRN 187

Query: 191 GPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNST 242
             GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+    S 
Sbjct: 188 SGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYNPHHYSP 229

[Close]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-46
Identity = 131/270 (48.52%), Postives = 155/270 (57.41%), Query Frame = 0 

Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLEKKKWELT-----GGGR--NFRV-LSSFQTGFGGNVG 130
             ACVDA PVIDGRRANCNLASL  ++ + +     GGGR  N RV +S+ QTGFG    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127

Query: 131 SAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGAT-AQYPMYG--T 190
                 PTF HY     +P NL+G   S       +   + Y +YG  +  QY +YG   
Sbjct: 128 P---QPPTFTHY---PHLPLNLFGY--SPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRN 187

Query: 191 GPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNST 250
             GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+      
Sbjct: 188 SGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYN------ 247

Query: 251 PTTFPQHYAAPPMSL-------PPTPPTLP 263
               P HY+ P  S+       P  PP +P
Sbjct: 248 ----PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-45
Identity = 130/263 (49.43%), Postives = 154/263 (58.56%), Query Frame = 0 

Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLEKKKWELT-----GGGR--NFRV-LSSFQTGFGGNVG 130
             ACVDA PVIDGRRANCNLASL  ++ + +     GGGR  N RV +S+ QTGFG    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127

Query: 131 SAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGAT-AQYPMYG--T 190
                 PTF HY     +P NL+G   S       +   + Y +YG  +  QY +YG   
Sbjct: 128 P---QPPTFTHY---PHLPLNLFGY--SPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRN 187

Query: 191 GPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNST 250
             GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+    S 
Sbjct: 188 SGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYNPHHYSP 247

Query: 251 PTTFPQHYAAPPMSLPPTPPTLP 263
           PT   Q  +   +S   T  +LP
Sbjct: 248 PTFSMQQGSRNRLSASTTSYSLP 250

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g09720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1S32.6e-2738.14Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S... [more]
Q5ZJX49.2e-2542.19RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1[more]
Q76LC64.6e-2438.81RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1[more]
Q9BX462.3e-2339.53RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1[more]
D3Z4I33.0e-2339.53RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1[more]
BLAST of Cp4.1LG06g09720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023535742.12.93e-17290.58RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023535743.12.01e-17190.55RNA-binding protein 38-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022930178.18.65e-17089.57RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi... [more]
KAG6592286.14.82e-16989.53putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022930180.15.92e-16989.53RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-bindi... [more]
BLAST of Cp4.1LG06g09720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IGG94.19e-17089.57RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE... [more]
A0A6J1EUB14.19e-17089.57RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ... [more]
A0A6J1ID092.86e-16989.53RNA-binding protein 38 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE... [more]
A0A6J1EW942.86e-16989.53RNA-binding protein 38 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ... [more]
A0A6J1IF553.78e-16690.30RNA-binding protein 38 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE... [more]
BLAST of Cp4.1LG06g09720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G33470.13.6e-5651.35RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G33470.26.1e-5651.92RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G22910.23.4e-4651.65RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G22910.14.4e-4648.52RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G22910.31.7e-4549.43RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..89
e-value: 9.9E-22
score: 88.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..73
e-value: 1.8E-15
score: 56.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..93
score: 16.551298
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..99
e-value: 2.3E-23
score: 84.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..275
NoneNo IPR availablePANTHERPTHR11176:SF16OS01G0876800 PROTEINcoord: 1..260
NoneNo IPR availableCDDcd12384RRM_RBM24_RBM38_likecoord: 16..91
e-value: 6.78451E-42
score: 136.591
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 1..260
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g09720.1Cp4.1LG06g09720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding