Cp4.1LG06g08290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g08290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Peptidylprolyl isomerase
Location	Cp4.1LG06: 5371429 .. 5378152 (+)
RNA-Seq Expression	Cp4.1LG06g08290
Synteny	Cp4.1LG06g08290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTATTAATTATACGAATATTTTTAAATTTTTTTAAAAAAATTTAAAATTTTAAAAAAAAATTAAATTTAAGAGTATTTTTTAAATCAATAATTAAACTTTGGAAAGTTTATGGATATTTTTTTAAAATATAATTTTTATTAATTTAACGGAAATACTTTAATTTAAAATTTTTAATTATATACTAAATTTTTAAAAGAATAAAAAATATTATTAAACTTGAACCCATATTTTAAAATACCCAAAAAAATTTAATTTTTATTAATAATATATTTAATTTTTTTAAAACATTTAAAAATATTCCTATTATTAGTATATGGAGGAATCTATAATTATACCCCATTTATAAAAATTAAAGTTAAATATATAATTTTTAAATATAGTACTAATTATTTTTTAAATTGTTAAAAAAAGTTAGAAAAATATTTAGGATATTATTTAAATTTTAAATTAAAAAATATATTTTTTTATTGATTTAGATATAATTTAATTAATTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTCCAACGTTCTTCGTCATAAATTTCACCATAGAACCCTCTCCTTTTCTTCCTCATCCATTAACGTCATCATCTTCACAACTTTTCAGGCTGTGCCATGGGAGTTCTCTCGTTCTGGAGCTCGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGGTATGCTCTTCCATGGCCGAATTTCTTTACTCCATTCGGATTCTGTTGAATTTTGTGTTTCTCTACACAGTAGTAGGTTTCCCTTTGCGTTTTGTAGCATTCATTGAAATATACTTTAGGTGTCCTGTGTTAAAATTTTATGTTGTGACTACGTGAGATCCGACGTTGGTTGGGGAGGAGAACGAAACATCCTTACAAGGGTGTGGAAACCTCTCCCTAGCAAACGCATTTTAGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAAGACAATATTTACTAGCGCGTGAGCTTGGGCCGTTACAAATGGTATAAGAGCCAGTCACCTGGCGATGTGCTAGTGAGGAGGTAGAGCCCTGAAGGGGGTGGACATGAGGTGATGTGCTAGCGAGGAGGCAGAGCCTTGAAGGGGGTGGACATGAGGCGATGTGCTAGGAGGAAGCTAGAAGGGGGTGGATTTGGCTAGGGTCCCAGATTGATTGGAGAAAGGAACGAGTGTCATTGAGGACGCTGGGCTCCGAAGGGGGATGGATTTGGCTGGGATCCCACATTGATTGGAGAAAGGAGCGAGTGCCATCGAGGACGCTGGGTCCCGAAGGGGGTGGATTGTGAGATCCCACATCGATTGGGTTGGAGAACGAAACACCGTTTGTAAGGGTGTGGAAACCTCTCCCTAGGAGACGCGTTTTAAAATCGCGAGGCTAATGGCGATACGTAACGGACCAAAGGAAACAATATCTGCTAGCGGTGGGCTTGGACTGTTACAAAGAGTATTAGAGCCAATTATTGGACAGCATGCCAGCGAGGACGTTGGGCCTCCAAAGTAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCTGTAGTAGACGTGTTTTAAAATCGTGAGGCTAATGGCGATACATAACGGGCCAAAACAAACAATATCTGCTAGCGGTGGCCTTGGACTGTTACAAATGGTATCAAAGCTAGTCACTGGGCAGTCTATCAGCGAGGATGCTTGGCTTCCAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGATGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGACTAACCGTGATACGTAACGTGCCAAAGCGGACAATATCTGCTATCGGTGCGTTTGAGTTATTACAAATGGTATCAGAGCCGGACATCGTGCGGTGTGCCAGTGAGGACGTTGGCTCCCAAAGGGGGTGGATTGTGAGACCTCACATTGGTTGGAGAGGGGAACGAAGCATTCCTTAGAAGGATGTGGAAACCTCTCTATAGTAAACACATTTTAAAACCTCGAGGGGAAGTCCATAAGGGAAAGCCCAAAGAGGACAATATTTGTTAGTGGCGGGATTAGACTATTACACTATTTTTCTTAAAATTTCGACCCGTGTCAAAATATAAGTCGTAACGTCTCTCTCCTCCTTTCAATCAGGATGATTGTTTAATGTTTCAAACTGTTCTTCAATCCAAGAACTCCAAACCTTAAATTCTGAGAATAGATATCTATATCAAACGATACTCACTTCTTGACAGCTTATGAATGGATGTTCTTGTAGCTTCCACAAAACCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATACGGTCAATCACTTAGACATTTTTTCTGTCAAACGATTTCCAAGAAGGCTGTTCGCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATCGACGTGCAAGAACCGGAAATAGTTCGGTATGTATTTCATTTGTAACTTTTTTCTTGAAATGTTCATATCATTTTCTTAACATCACAATGAAGAGGGCTGCATGACCATCCATCAAAAGTACTTCACATGTTCTCATTTGGAATTGTTGTTTGAATTTTGAAGCTTTCAGGACGCTAAAGCTCGACAGTGGAGTTCGGATTCAAGGTAGAATTTCTTTGTTTAAAATCTCAAGATTTAATAAATCTTTTTGTAATGACCCAGGCCCACCGCTAGTAGATATTGTCCTCTTTGCGCTTCCCCTTTCAGGCTTCCCCTCAAGGCTTTAAAACACGTCTACTAGGGGAAGGTTTCCACGCCCTTATAGAGGATGTTTTGTTCTCCTCTCCAACCAATGTAGGACATCACAATCCACTCCCCTTCGGGGCCCAGCGTCCTCGCTGGCACTCATTCCTTTCTCCAATCGATGTGAGACCACCACCAAATCCACCCCCTTTAGGGCCCAACGTCCTTACTAGCACACCACCTTGTGTCTATCCCCCTTCGAGAAACAGCAAGAAAGCTGACACATCATCCGGTGTCTGGCTCTGATACCATTTGTAACGACCCAGGCCCACCGCTAGCAGATATTGTCCTCTATAGGCTTTCCCTTTCAGGCTTCCCCTCAAAGCTTTAAAACGCGTATGGTAGGGGAAGGTTTCCATACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAAGTGTTTATAGATGAACATGTTTGGTTGTAATGTAGCAGGCTCGTTTTATGGCGTTTTAAATATGGTATAGATTTAGTTCCTTCTTCATACTGATTGTGATGAAAACTACATTATTTGTGTTCAATGATTGTTCTATATAATTCTTGAATATGAAAACAAATAAGGTCTATGATTGATGATTTCACTGTAGTAACATTTTTAGTTCCAATTAATAGAAGTTCTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGACTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATATTTCGTTCATAGGTAATGTATTTTTCTGGTGTTTTAGCTACTAACTATGCAAATTTGTTTATGGTTGGAGAGGGAACGAAGCATTCCTTGTAAGTGTGTGGAAAATCCCTAGCAGACGCGTTTTAAAAACCTTGAGGCAAAGCTCGAAAAGGAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGCTGTTGCAAATGGTATCAGAGCTAGACACCGAGCGGTGTGCCAGCAAGGATGTTGGGCCCCCAAGGGGGTAGGGATTGTGAGATTCTACATTGGTTGGAGAGGGGAACGAAACATTTCTGATATGAGTGTGGAAACCTCTCTCTAGTAGACCCGTTTTAAAAACTTTGAGGGGATACCCGAAAAAGAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCCAGACACCGAGCGGTATGCCAGTGGGGACACTGGGTCCCCAAGGGGGTGGATTATGAGATCTCACATTGGTTGGAGAGGGAAACGAAACATTTCTTATAAGGGTGTGGAAATCTCTCCCTAGCAAACGCGTTTTAAAACCTCGAGAGGAAGCCTGAAAGGAAGTTACAATGTAATCCATAAAGTACAAGAACTAAATTGTTACCATTGCCTCCGTTATCATATTCATTGTGAGATCTCACATTGGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACCTCGAGGGGAAGCCTAAAAGGAAGTAACAATGTAATCCATGAAGTACAAGGACTAAATCGTTCCCATTGCCTCTGTTATCATATTCACAGTACGATAGATCAATTCAGCGGAGAAAGCACACCAGTAATCCTGCCTTTGAAACAAAACCAGGTAATCTCTTCTTTTACATCAGTTCTTCGAGAAAACTATGGGGGCGATAAACGTTCGATAATTTTGAATAGATATTAATTATGGTCGTTCTATTTTTCGATGTGCAATGATCTGTTTACGAGTGTGTAATTGTCGATAGCGGATAGCTTCAGTTTATGCAGCCTATCACTAGAACTTTGCTGGTTTTTGGAAGATCCTCTGTTAGTTAGCTTGTATAATCTTCTCTTTTTAACAAACGCTTAGGTTGCTCGATCAGCTTTCGGGTTTTGTATCATTCAATGATCGGATCAGCTTTCGAGTATTGGCGTTTATTACTGATATTTGTTTCTTACAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTGTATGGATATTCAATCATCTTTACTCAGTTTGTTCTTATGCTTATCAAGCTGTTCATGGCTTTTATTATGCAGAAACCTCTTCAACTTCTTTGGATTAGCCTTGTATTTTAGGTTTCTATTGTCTTAACTTCTACCTTTTATGTCGCTTCGTTTGCTTCACGACTTACGGCTGAAATAGGAAACGAGAAACATAAACGTTACTAGACCACCTTTAATCTTGCGCATCTGTTAATGGGATATTTCTCATATGTGAGATCCCACGTCGGGTGGAATGAGAAATGAAGCATTCCTTATAAGGGTGCGGAAACCTTTGCCTAACAGACGCGTTTTAAAACCGTGAGGCTGATGACGATACGTAACGGGCCAAAATGGACAATATCTGCTAGACGTGGGCTTGAGTTGTTACAAATGGTATTAGAGTCATACACGGGACACTGTGTTAGTGAGGACGCTGGGCCCCCAAGGGGGTTAATTGTGAGATCTCATATCGATTGGAGAGGGGAACGCAACATTCCTTATAAGGGTGTGGAAACCTCTACCTAGTAGGGGCGTTGTAAAACCGTGAGGCTGACGATGATACGTAACAGGCCAAAATAGACATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAAATATCGGGCGGTGTGACAGCAAGGACACGTTAGGCCCCCAAGGAGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGGGAACAAAGCATTCTTATGTGGAAACCTCTGCCTAGTAGACACGTTTTAAAACCGTCAAGGAGGTCCTTTTCTTTCTTCGGACTGATGACTCGCTTGGCTGTATGGGCAGGTTGCCCCTCGCTGCTGCGTTCTGTTAGGCCATGGATTATAGGAACAAATGTAGTTGAATGAGACAGCAAGCGGGTTACACGTTCCACTGTGCCAAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCACGGAGCCCTTGACAAGCACTCCAAGACCTGCCAATGCTCATGAGGCGATACATAACGGGCTAAAAGGACAATATTTATTAATGGTGGGCTTGTGGTGTTACAAATGGTATCAGAGTCAGATATCGGGCGGTGTACCTGTATAGACACAAAGCCCCCAAAGGGGATGGATTGTGAAATCCTACATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACGTTTGCCTAGCAGACACGTTTTAAAACTGTAAACCTGACAGCGATATGTAACGGGTCAAAACGGACCACACCCTCTATTAACACAGAAATGCGTTTATTATTTGTTATCAGGGAAAAGAAGAGCACTTATCCCTCCCTCTGTGGGTTACATAAATGAGAATTTGAACCCAATTCCTGAAGAGGTAAAGCAAAGTTCTTTCTCTAATCATTCTTTTACTAGCATTAACACCATAGATTATCCATCTTAATCACTTGTGTTTCGTCGTATTATTTCTTAAGCACGACAACGTTGCTCGATAAAATTAAGTTCGCTTTGTTGCAGTTTGGCCCTCGGCGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTACAACTTTTGAAAGTTCAATGAATATCATTCTCTCGACTTAGAAAGTTCATTCGATGAGTGTTGATATTTGAAAATATGAGTAGAAAGTTCATTCATGGCGGGCTCACATCATCATTATGTGGTGTGTCCTTTGCCATTATTCGGCTGTAATCAGAGGCCGAAAGAACGTGTAATTGCTATTAAAAGACGGAAACGTTGATATTTTCTTTTTTGTATCTGAAAATAACCTACTGTCGATGATCAGAGCCTTGACTTTTTATATTATTAGTAAAGTACAGGAGCGTTTT

mRNA sequence

ATGCAAGTATTTTTTAAATCAATAATTAAACTTTGGAAATTCTCTCGTTCTGGAGCTCGTTTCGCTCTCCTTCCGCCCTTCCACAAAACCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATACGGTCAATCACTTAGACATTTTTTCTGTCAAACGATTTCCAAGAAGGCTGTTCGCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATCGACGTGCAAGAACCGGAAATAGTTCGGACGCTAAAGCTCGACAGTGGAAAGTTCTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGACTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATATTTCCGGAGAAAGCACACCAGTAATCCTGCCTTTGAAACAAAACCAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGCCCTCGGCGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTACAACTTTTGAAAGTTCAATGAATATCATTCTCTCGACTTAGAAAGTTCATTCGATGAGTGTTGATATTTGAAAATATGAGTAGAAAGTTCATTCATGGCGGGCTCACATCATCATTATGTGGTGTGTCCTTTGCCATTATTCGGCTGTAATCAGAGGCCGAAAGAACGTGTAATTGCTATTAAAAGACGGAAACGTTGATATTTTCTTTTTTGTATCTGAAAATAACCTACTGTCGATGATCAGAGCCTTGACTTTTTATATTATTAGTAAAGTACAGGAGCGTTTT

Coding sequence (CDS)

ATGCAAGTATTTTTTAAATCAATAATTAAACTTTGGAAATTCTCTCGTTCTGGAGCTCGTTTCGCTCTCCTTCCGCCCTTCCACAAAACCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATACGGTCAATCACTTAGACATTTTTTCTGTCAAACGATTTCCAAGAAGGCTGTTCGCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATCGACGTGCAAGAACCGGAAATAGTTCGGACGCTAAAGCTCGACAGTGGAAAGTTCTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGACTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATATTTCCGGAGAAAGCACACCAGTAATCCTGCCTTTGAAACAAAACCAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGCCCTCGGCGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTACAACTTTTGAAAGTTCAATGA

Protein sequence

MQVFFKSIIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIMSAGVQMDISGESTPVILPLKQNQIIEGLKEVLVGMRVGGIFGPRRSLLSHRNEPLIFEVQLLKVQ

Homology

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BLAST of Cp4.1LG06g08290 vs. ExPASy Swiss-Prot
Match: Q944B0 (Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP16-1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-21
Identity = 71/182 (39.01%), Postives = 94/182 (51.65%), Query Frame = 0


Query: 38  SISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPIL-LYANPSFGAPMIDVQEPEIVRTLKL 97
           S+S+   V    + +V   PRR+F Q  G   +L L   PS  AP+  ++EPE++RTLKL
Sbjct: 26  SVSRISRVGFSSVSAV-HVPRRMFMQLSGFGSVLTLLDFPSLAAPVPQMKEPEVIRTLKL 85

Query: 98  DSGKFLREMEQKHMKETWWSSIMSAGVQM-------------DISGESTPVILPLKQNQI 157
            SG   +E+ +   +E     ++                     SGES+PV L L +N +
Sbjct: 86  PSGVRYQEIIEGEGREAHEGDLVELNYVCRRANGYFVHSTVDQFSGESSPVKLILDENDV 145

Query: 158 IEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQLL 184
           IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QLL
Sbjct: 146 IEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQLL 205

[Close]

BLAST of Cp4.1LG06g08290 vs. NCBI nr
Match: XP_023534862.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (601), Expect = 1.16e-75
Identity = 136/212 (64.15%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++  W   RS +       FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS
Sbjct: 3   VLSFWSSFRSPSA-VKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM-------- 127
           YPILLYANPSFGAPMIDVQEPEIVRTLKLDSG  ++E+ +    E     ++        
Sbjct: 63  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCRR 122

Query: 128 SAGVQM-----DISGESTPVILPLKQNQIIEGLKEVLVGMRVGGI--------------- 184
           S G  +       SGESTPVILPLKQNQIIEGLKEVLVGMRVGG                
Sbjct: 123 SNGYFVHSTIDQFSGESTPVILPLKQNQIIEGLKEVLVGMRVGGKRRALIPPSVGYINEN 182

[Close]

BLAST of Cp4.1LG06g08290 vs. NCBI nr
Match: XP_023534863.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234 bits (598), Expect = 2.16e-75
Identity = 133/193 (68.91%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 27  FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQ 86
           FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQ
Sbjct: 8   FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQ 67

Query: 87  EPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM--------SAGVQM-----DISGESTP 146
           EPEIVRTLKLDSG  ++E+ +    E     ++        S G  +       SGESTP
Sbjct: 68  EPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCRRSNGYFVHSTIDQFSGESTP 127

Query: 147 VILPLKQNQIIEGLKEVLVGMRVGGI----------------------FGPRRSLLSHRN 184
           VILPLKQNQIIEGLKEVLVGMRVGG                       FGPRRSLLSHRN
Sbjct: 128 VILPLKQNQIIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRN 187

[Close]

BLAST of Cp4.1LG06g08290 vs. NCBI nr
Match: XP_022976011.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 227 bits (578), Expect = 3.63e-72
Identity = 130/212 (61.32%), Postives = 144/212 (67.92%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++  W   RS +     P FHKTI MADEVSISKHH VNH+D FSVKRFPRRLF+QFIGS
Sbjct: 3   VLSFWSLFRSPSA-VKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM-------- 127
           YPILLYANPSFGAPM+DVQEPEIVRTLKLDSG  ++E+ +    E     ++        
Sbjct: 63  YPILLYANPSFGAPMMDVQEPEIVRTLKLDSGVRIQEVFEGDGAEAHEGDLVEFNYVCRR 122

Query: 128 SAGVQM-----DISGESTPVILPLKQNQIIEGLKEVLVGMRVGGI--------------- 184
           S G  +       SGESTPVILPLK+NQIIEGLKEVLVGMRVGG                
Sbjct: 123 SNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSMGYINEN 182

[Close]

BLAST of Cp4.1LG06g08290 vs. NCBI nr
Match: XP_023534865.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225 bits (574), Expect = 5.67e-72
Identity = 131/199 (65.83%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++  W   RS +       FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS
Sbjct: 3   VLSFWSSFRSPSA-VKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIMSAGVQMDI 127
           YPILLYANPSFGAPMIDVQEPEIVR               +  K   WSS  S   Q   
Sbjct: 63  YPILLYANPSFGAPMIDVQEPEIVRF--------------QDAKARQWSSDSSTIDQF-- 122

Query: 128 SGESTPVILPLKQNQIIEGLKEVLVGMRVGGI----------------------FGPRRS 184
           SGESTPVILPLKQNQIIEGLKEVLVGMRVGG                       FGPRRS
Sbjct: 123 SGESTPVILPLKQNQIIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRS 182

[Close]

BLAST of Cp4.1LG06g08290 vs. NCBI nr
Match: XP_022937350.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 225 bits (573), Expect = 2.09e-71
Identity = 130/212 (61.32%), Postives = 142/212 (66.98%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++ LW   RS         FHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIGS
Sbjct: 3   VLSLWSLFRSPCA-VKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM-------- 127
           YPILLYANPSF APM+DVQEPEIVRTLKLDSG  ++E+ +    E     ++        
Sbjct: 63  YPILLYANPSFSAPMMDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCRR 122

Query: 128 SAGVQM-----DISGESTPVILPLKQNQIIEGLKEVLVGMRVGGI--------------- 184
           S G  +       SGESTPVILPLK+NQIIEGLKEVLVGMRVGG                
Sbjct: 123 SNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSVGYINEN 182

[Close]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL
Match: A0A6J1IFQ8 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1)

HSP 1 Score: 227 bits (578), Expect = 1.76e-72
Identity = 130/212 (61.32%), Postives = 144/212 (67.92%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++  W   RS +     P FHKTI MADEVSISKHH VNH+D FSVKRFPRRLF+QFIGS
Sbjct: 3   VLSFWSLFRSPSA-VKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM-------- 127
           YPILLYANPSFGAPM+DVQEPEIVRTLKLDSG  ++E+ +    E     ++        
Sbjct: 63  YPILLYANPSFGAPMMDVQEPEIVRTLKLDSGVRIQEVFEGDGAEAHEGDLVEFNYVCRR 122

Query: 128 SAGVQM-----DISGESTPVILPLKQNQIIEGLKEVLVGMRVGGI--------------- 184
           S G  +       SGESTPVILPLK+NQIIEGLKEVLVGMRVGG                
Sbjct: 123 SNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSMGYINEN 182

[Close]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL
Match: A0A6J1FGD1 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111443666 PE=4 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.01e-71
Identity = 130/212 (61.32%), Postives = 142/212 (66.98%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++ LW   RS         FHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIGS
Sbjct: 3   VLSLWSLFRSPCA-VKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM-------- 127
           YPILLYANPSF APM+DVQEPEIVRTLKLDSG  ++E+ +    E     ++        
Sbjct: 63  YPILLYANPSFSAPMMDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCRR 122

Query: 128 SAGVQM-----DISGESTPVILPLKQNQIIEGLKEVLVGMRVGGI--------------- 184
           S G  +       SGESTPVILPLK+NQIIEGLKEVLVGMRVGG                
Sbjct: 123 SNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSVGYINEN 182

[Close]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL
Match: A0A6J1IKV4 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 1.09e-70
Identity = 126/193 (65.28%), Postives = 137/193 (70.98%), Query Frame = 0


Query: 27  FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQ 86
           FHKTI MADEVSISKHH VNH+D FSVKRFPRRLF+QFIGSYPILLYANPSFGAPM+DVQ
Sbjct: 8   FHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQ 67

Query: 87  EPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM--------SAGVQM-----DISGESTP 146
           EPEIVRTLKLDSG  ++E+ +    E     ++        S G  +       SGESTP
Sbjct: 68  EPEIVRTLKLDSGVRIQEVFEGDGAEAHEGDLVEFNYVCRRSNGYFVHSTVDQFSGESTP 127

Query: 147 VILPLKQNQIIEGLKEVLVGMRVGGI----------------------FGPRRSLLSHRN 184
           VILPLK+NQIIEGLKEVLVGMRVGG                       FGPRRSLLSHRN
Sbjct: 128 VILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSMGYINENLNPIPEEFGPRRSLLSHRN 187

[Close]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL
Match: A0A6J1FA42 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111443666 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 1.09e-70
Identity = 126/193 (65.28%), Postives = 136/193 (70.47%), Query Frame = 0


Query: 27  FHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPILLYANPSFGAPMIDVQ 86
           FHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIGSYPILLYANPSF APM+DVQ
Sbjct: 8   FHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIGSYPILLYANPSFSAPMMDVQ 67

Query: 87  EPEIVRTLKLDSGKFLREMEQKHMKETWWSSIM--------SAGVQM-----DISGESTP 146
           EPEIVRTLKLDSG  ++E+ +    E     ++        S G  +       SGESTP
Sbjct: 68  EPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCRRSNGYFVHSTVDQFSGESTP 127

Query: 147 VILPLKQNQIIEGLKEVLVGMRVGGI----------------------FGPRRSLLSHRN 184
           VILPLK+NQIIEGLKEVLVGMRVGG                       FGPRRSLLSHRN
Sbjct: 128 VILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRN 187

[Close]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL
Match: A0A6J1IIB9 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 6.08e-69
Identity = 125/199 (62.81%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 8   IIKLWKFSRSGARFALLPPFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIGS 67
           ++  W   RS +     P FHKTI MADEVSISKHH VNH+D FSVKRFPRRLF+QFIGS
Sbjct: 3   VLSFWSLFRSPSA-VKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIGS 62

Query: 68  YPILLYANPSFGAPMIDVQEPEIVRTLKLDSGKFLREMEQKHMKETWWSSIMSAGVQMDI 127
           YPILLYANPSFGAPM+DVQEPEIVR               +  K   WSS  S   Q   
Sbjct: 63  YPILLYANPSFGAPMMDVQEPEIVRF--------------QDAKARQWSSDSSTVDQF-- 122

Query: 128 SGESTPVILPLKQNQIIEGLKEVLVGMRVGGI----------------------FGPRRS 184
           SGESTPVILPLK+NQIIEGLKEVLVGMRVGG                       FGPRRS
Sbjct: 123 SGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSMGYINENLNPIPEEFGPRRS 182

[Close]

BLAST of Cp4.1LG06g08290 vs. TAIR 10
Match: AT4G26555.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-23
Identity = 71/182 (39.01%), Postives = 94/182 (51.65%), Query Frame = 0


Query: 38  SISKHHTVNHLDIFSVKRFPRRLFAQFIGSYPIL-LYANPSFGAPMIDVQEPEIVRTLKL 97
           S+S+   V    + +V   PRR+F Q  G   +L L   PS  AP+  ++EPE++RTLKL
Sbjct: 26  SVSRISRVGFSSVSAV-HVPRRMFMQLSGFGSVLTLLDFPSLAAPVPQMKEPEVIRTLKL 85

Query: 98  DSGKFLREMEQKHMKETWWSSIMSAGVQM-------------DISGESTPVILPLKQNQI 157
            SG   +E+ +   +E     ++                     SGES+PV L L +N +
Sbjct: 86  PSGVRYQEIIEGEGREAHEGDLVELNYVCRRANGYFVHSTVDQFSGESSPVKLILDENDV 145

Query: 158 IEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQLL 184
           IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QLL
Sbjct: 146 IEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQLL 205

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q944B0	1.1e-21	39.01	Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Cp4.1LG06g08290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534862.1	1.16e-75	64.15	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]
XP_023534863.1	2.16e-75	68.91	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X2 [Cucurbit...	[more]
XP_022976011.1	3.63e-72	61.32	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]
XP_023534865.1	5.67e-72	65.83	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbit...	[more]
XP_022937350.1	2.09e-71	61.32	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]

BLAST of Cp4.1LG06g08290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IFQ8	1.76e-72	61.32	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1	[more]
A0A6J1FGD1	1.01e-71	61.32	Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111443666 PE=4 SV=1	[more]
A0A6J1IKV4	1.09e-70	65.28	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1	[more]
A0A6J1FA42	1.09e-70	65.28	Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111443666 PE=4 SV=1	[more]
A0A6J1IIB9	6.08e-69	62.81	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111476541 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g08290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26555.1	7.8e-23	39.01	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.50.40		coord: 112..184 e-value: 4.1E-5 score: 25.4
None	No IPR available	PANTHER	PTHR43811	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	coord: 127..158
None	No IPR available	PANTHER	PTHR43811	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	coord: 41..104
None	No IPR available	PANTHER	PTHR43811:SF26	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC	coord: 160..183
None	No IPR available	PANTHER	PTHR43811:SF26	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC	coord: 127..158 coord: 41..104
None	No IPR available	PANTHER	PTHR43811	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA	coord: 160..183
None	No IPR available	SUPERFAMILY	54534	FKBP-like	coord: 129..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08290.1	Cp4.1LG06g08290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity