Cp4.1LG06g08220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g08220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Farnesyl diphosphate synthase 2
Location	Cp4.1LG06: 5360144 .. 5360470 (+)
RNA-Seq Expression	Cp4.1LG06g08220
Synteny	Cp4.1LG06g08220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

mRNA sequence

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCATAAACCAGATCACAAGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCTTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Protein sequence

MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP

Homology

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (563), Expect = 1.05e-72
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
           MDHKPDH+APRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS
Sbjct: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60

Query: 61  CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108
           CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
Sbjct: 61  CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 4.34e-42
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   MDHKPDHKAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DH+APRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (315), Expect = 6.52e-35
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
           MDHKPDH+APRP  R++ +HH+K  FTDFDLED K+   +L S    S   K   +AK S
Sbjct: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60

Query: 61  CLCSPTTHIGSFRCRHHRHT-GMLRGRSVGSNLSELAHKSTDLM 103
           CLCSPTTHIGSFRCRHHR + G+LRG SVGSNLS+L  KS++ M
Sbjct: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFM 104

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 1.44e-27
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 27  TDFDLEDFKQGTNLLASSPSR-SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRG 86
           T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG
Sbjct: 4   TELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRG 63

Query: 87  RSVGSNLSELAHKSTDLMTSYSP 108
            SVGSNLS+LA K T++M  +SP
Sbjct: 64  GSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of Cp4.1LG06g08220 vs. NCBI nr
Match: KAF4362350.1 (hypothetical protein F8388_008234 [Cannabis sativa])

HSP 1 Score: 91.3 bits (225), Expect = 2.70e-21
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 22  HKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT 81
           +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+GSFRCRHHR  
Sbjct: 19  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 78

Query: 82  GMLRGRSVGSNLSELAHKSTDL 102
           GMLRG SVGSNL++L  KS+ +
Sbjct: 79  GMLRGGSVGSNLADLGRKSSSI 100

[Close]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.10e-42
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   MDHKPDHKAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DH+APRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 6.95e-28
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 27  TDFDLEDFKQGTNLLASSPSR-SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRG 86
           T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG
Sbjct: 4   TELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRG 63

Query: 87  RSVGSNLSELAHKSTDLMTSYSP 108
            SVGSNLS+LA K T++M  +SP
Sbjct: 64  GSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.31e-21
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 22  HKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT 81
           +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+GSFRCRHHR  
Sbjct: 19  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 78

Query: 82  GMLRGRSVGSNLSELAHKSTDL 102
           GMLRG SVGSNL++L  KS+ +
Sbjct: 79  GMLRGGSVGSNLADLGRKSSSI 100

[Close]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.46e-21
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1  MDHKPDHKAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + ++P+ I  NN N   K +  D +L + K+ T+LLAS P    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMNF--KLKIPDINLNELKKQTHLLAS-PRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 98
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

[Close]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.98e-21
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 22  HKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT 81
           +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+GSFRCRHHR  
Sbjct: 34  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 93

Query: 82  GMLRGRSVGSNLSELAHKSTDL 102
           GMLRG SVGSNL++L  KS+ +
Sbjct: 94  GMLRGGSVGSNLADLGRKSSSI 115

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 48  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA 97
           S+     SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 56 SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL 96
          S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of Cp4.1LG06g08220 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-05
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 55 SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL 93
          S  K  C+CSPTTH GSF+C+ HR   + R +SV +N+
Sbjct: 26 SITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08220 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g08220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024984.1	1.05e-72	99.07	hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN44385.1	4.34e-42	63.25	hypothetical protein Csa_015645 [Cucumis sativus]	[more]
KAG6607735.1	6.52e-35	61.54	hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0048240.1	1.44e-27	65.06	putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D...	[more]
KAF4362350.1	2.70e-21	53.66	hypothetical protein F8388_008234 [Cannabis sativa]	[more]

BLAST of Cp4.1LG06g08220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W3	2.10e-42	63.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
A0A5A7TYF3	6.95e-28	65.06	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A7J6EXD7	1.31e-21	53.66	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1	[more]
W9SBP1	1.46e-21	54.08	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
A0A7J6H8T3	1.98e-21	53.66	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g08220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	3.2e-08	57.69	serine-rich protein-related	[more]
AT5G55980.1	5.4e-08	60.00	serine-rich protein-related	[more]
AT1G67910.1	4.3e-05	53.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	4.3e-05	53.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G24577.1	9.5e-05	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..60
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 44..101
None	No IPR available	PANTHER	PTHR33132:SF48	BNACNNG68960D PROTEIN	coord: 44..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08220.1	Cp4.1LG06g08220.1	mRNA