Cp4.1LG06g08130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g08130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	sufE-like protein 1, chloroplastic/mitochondrial
Location	Cp4.1LG06: 5426137 .. 5429922 (+)
RNA-Seq Expression	Cp4.1LG06g08130
Synteny	Cp4.1LG06g08130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCAAAGTCGGAAGATAAAGGAAATCGCAGTTCTGATGTTCGAGGAAGTAGAGGGAAGAGAATTAAGGAGAAACTCACTTTAATTTGAAGGCTGTGTCGAAGGAGTTAGAAGGCATAGGCTCGTTTATAATCTGTTGCAAGAAGATTTCCTGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGAAGCCAATGGAGAAAAGGTTCGTCATCACAATTCACTTGAAAGAGTTTTTCCTTCAATTTTACTGTGATTTCTGAGGAGTATTTATGTTATAATCTTCATAATGTTAGGCTTAGAGGTTGAAGTTTTGGTGTCAATGAATCTGTAAACAATCTTTTCATAGGTAGAAAACAGAAAGAGAACAAAACTCATCATTTTCCAATGGAATTTGTGATTGATTCATTTCATAGGTAGAGAACAGATATAATGTATTTCTCTATCGTGTGGGTTTTGATTAACAAATTCTGCTAAAATTTCCTGAGATCTAAGTTGGCTTTTGTTCTTACTGCCTCCAAGCTCGTATGTACTTGTTCTTCATTGGAACTTGGGTTAGTATCTTATGCATTCTTTTACCGAATTATGGCAAAATCTAAAGCTCAGGGACCTTCTAGCCATTGAATTTGGGGTTTCTTCTCTGTCTAGTGGAACTGGTTCTGGACAGGGGACTGATTTTGATTAAATTGATGGATAAGAAGTATAAAAATGGAGGAAAAAAAAATCTGATTTCATTGAGTTCCATTCTGAACAATGTCAGAATGAATTATTATCCCATCAAACAACTAGAATCAGACATGAAAACACAATTTGAAATCTCAACTTCAGGAATTATCTTCCAATCTTTGCTTTCTCAGCCACTTCAGGTTTTACATTGTGCCTTGTTTAAAAAGAATTCATCAAGAAGATCAGTTGATGTTTCAATAGGAATTCTCAGTGTTCTCTTTATTTTCTGGTCATGTGAATCGCCTTCGGTTTAGATTTTACTAGGTTTTAGGGTATGGTATTTTCTTTTTATGTTTCAAGTTCTCTACAAGCCTAGAGTTGAGATGGCGTTTCTTATTTTTCCTTCCCTTTCTCATGGAAAATGTCTTTGATTTTAAGATTGAGCTATCTCGTCATGCACTCTCCATCCAGCGGTTGTTTTCGAGAGTGAGGGAGTCGATTTTTCCCACCAAGGCTCAATCACTAGGAGTATGTATTTTGCTGGTTATTCCCAAATGAGGTGCTTGATTTCCATGAACAAGTCAATAACTTCCAGAGCTACTCAAGATGGTCAGCTTGTTTTTAAATCAACTATAGTTGATCTTCCCCTTTGGTATTGATGCACTCACAGTTTGAAGGTAGAATGATCAGGATGTTATATTCGCTCTAATTTCAAACCCTTCCAGTAAAGAATTATCTAAACTTTGTATTTCATGCATGGTTTTCTTTTTGAAACATTCATTAGTGGACTTGCTTAATGATGGGAACTTTGATTGGATTAATTGATAATAAATGGTATAGTGGAGTTGGATTATCAGTCAAGGTAACAAATAGCAAGCGGTAAATCTAGATCCTTGTAAGGTTTGGATTCAATGGTAGCCATAGGTTATATAATATCTTTATAAAATTCCCAGCAGCAAATGTGGTAGATTGGACAGTGTTCTGTAGCATTAAGCTGGCCTAGAAATCAATAGTTATATAAAGGAAAACATACAAAAATGTTAGTTTGAAAAAAAAAGTTATTGGCAGAAAATCCTCAAGGGATATTTGGTTAATACTCACAAGTCACGCATATTTCCCCTTAGCAATTGATGATGAGTGCTGTAACTGTCGATGTATTTGTCCAATGTATCCGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTTCCCTCAAGGTCTTTAAAACACGTCTGCCAGGGAGAGGTTTCTACACCCTTATAAAAAATGTTTCGTTCTCCTCCTCAACCGATGTGGGATCTCACAAGTGCATTAGATCAGGAAAGAATAGCAGCGAAAAAAAATGAGGTTGTTATTACTCGTCAAGAACTAAAATGTCAAATTGATATTGCCAAAATACAGCAAGATCTGGCAGAATTGTTAAACTGAAGATTTTTCTTCATCAGTTGTGCTTCTGTAGTCTATATGTTGGTTGATCCAAGGCTCTTATGCGCTAGTTGTTAAAGAAGAATCACCTAAAAAGCTCACACACAACCCTAAAAATGGTGTAAACCATGTCAAACAAGATGAATGGTGTTCAACTGATATTTCAGATCTTTTCAGACTTATATCCATAACTGTGATTTGGACAATGCATATAGAGATATCATAGAAGGTGTGCAACATAATATTTCTGCTTCTTCACCTCTTGGTTCTGCAACTCCGAGCAACTAGAGCGCCAGTTGGCGGACTAGTCATCACCAACTCGCATCGGCTATGCAGCCAGTAAGAGTAATGGACGAAACCCAGAGAAGCTTTGACCTTGAAAGTTCCTCTGATGTTATAGACAATCTTGTTGTTCTGTACCTGTCGTCGAAGTACCAACCCGAAATTCTGTGGCAAGAAAACTAGACTGGATATCAAATGAACAGGTTGTAACCTCACTTCTTTTTTTCTTTGACTGAAGGGCTGGATTGCTTGAGTTGCTATGAGTCGATCCCCAAAGAAGAGCTCTATGTCTGCATTCTCATATCTCACATCGACTCTCTGGTTCGGGTTGGTGAAGTTTGCGAGAAGAGTGAAGTCTCCATTGAGATATTCAGGTGCATCAAAGTAGATAGTGCTGAGGCTTGCATTTGGTATGTCAAACACAGGATTTCTTGGTCTAACAACCAGGAAAATGATCAAAGTGGCAATTCCAAGGAAGATGAGAAGAAGACTAAAAAGTAGACACAGGAATGCAAAACACCATATAATCGGATTCGTTTGGCGTGGCCGAGCTTGCTGTAATAACTGTGGCTTACTATACTTACTAGAATCTATATGATTTGAATTCAGCAGTGGACTATTCGGTTTCATAGCTCGATTTTGCACAACTATTTGCTTCAAAGAAGCCATCTCTGCCTCTCTTGAAGATGAAGCAGCAGGTGCTTGAGAGACTGCAGCAGAGGCAGGGGACAGTATAGTTGTTGGTAGAGCGGCGGCTCTGGACAGCGGCGACCTTGTCGATGGAGATATAAAAGATGGCGGCGGCGGAAGAGGAGGTAGAGGAGGTTGAGGAGGCATCTGAGCAAGGCTGTATGAAGAATCCTCTGAATCAAGGAAGAAGATGAAAGGTGATATCTTTACCAAATTGTTTATATGAACTGTTAGGTGGTGATTGAAGTAACAAAAATGGGAGCTAAAGAAGCTTTTGAAAAAGGATGGTGGGTCCAATGAGCTGTGTTATTGATATTGGGAAAAGAAGAAGAAGGGAGTGTCCTAAAAGGTGAAATAAAGTTGAAACCAAATAGGTGTGTCTCTGTTTGAAATGAAGAACTTCAGCTTTTGGAATTGCAATTCCATTAACCAAAACTCCAAAAAGAGAGCCATTTATGTATTAATCTAATGTATTCCATGTAATCTTAGGGATTATATTGTATAGTTCTCTTATTTTGAAAAGGGTATGTTATACTCTTAATTTAGTACTTTTTTTTTGTTCTT

mRNA sequence

AAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCAAAGTCGGAAGATAAAGGAAATCGCAGTTCTGATGTTCGAGGAAGGCTGGATTGCTTGAGTTGCTATGAGTCGATCCCCAAAGAAGAGCTCTATGTCTGCATTCTCATATCTCACATCGACTCTCTGGTTCGGGTTGGTGAAGTTTGCGAGAAGAGTGAAGTCTCCATTGAGATATTCAGGTGCATCAAAGTAGATAGTGCTGAGGCTTGCATTTGGTATGTCAAACACAGGATTTCTTGGTCTAACAACCAGGAAAATGATCAAAGTGGCAATTCCAAGGAAGATGAGAAGAAGACTAAAAAGTAGACACAGGAATGCAAAACACCATATAATCGGATTCGTTTGGCGTGGCCGAGCTTGCTGTAATAACTGTGGCTTACTATACTTACTAGAATCTATATGATTTGAATTCAGCAGTGGACTATTCGGTTTCATAGCTCGATTTTGCACAACTATTTGCTTCAAAGAAGCCATCTCTGCCTCTCTTGAAGATGAAGCAGCAGGTGCTTGAGAGACTGCAGCAGAGGCAGGGGACAGTATAGTTGTTGGTAGAGCGGCGGCTCTGGACAGCGGCGACCTTGTCGATGGAGATATAAAAGATGGCGGCGGCGGAAGAGGAGGTAGAGGAGGTTGAGGAGGCATCTGAGCAAGGCTGTATGAAGAATCCTCTGAATCAAGGAAGAAGATGAAAGGTGATATCTTTACCAAATTGTTTATATGAACTGTTAGGTGGTGATTGAAGTAACAAAAATGGGAGCTAAAGAAGCTTTTGAAAAAGGATGGTGGGTCCAATGAGCTGTGTTATTGATATTGGGAAAAGAAGAAGAAGGGAGTGTCCTAAAAGGTGAAATAAAGTTGAAACCAAATAGGTGTGTCTCTGTTTGAAATGAAGAACTTCAGCTTTTGGAATTGCAATTCCATTAACCAAAACTCCAAAAAGAGAGCCATTTATGTATTAATCTAATGTATTCCATGTAATCTTAGGGATTATATTGTATAGTTCTCTTATTTTGAAAAGGGTATGTTATACTCTTAATTTAGTACTTTTTTTTTGTTCTT

Coding sequence (CDS)

AAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCAAAGTCGGAAGATAAAGGAAATCGCAGTTCTGATGTTCGAGGAAGGCTGGATTGCTTGAGTTGCTATGAGTCGATCCCCAAAGAAGAGCTCTATGTCTGCATTCTCATATCTCACATCGACTCTCTGGTTCGGGTTGGTGAAGTTTGCGAGAAGAGTGAAGTCTCCATTGAGATATTCAGGTGCATCAAAGTAGATAGTGCTGAGGCTTGCATTTGGTATGTCAAACACAGGATTTCTTGGTCTAACAACCAGGAAAATGATCAAAGTGGCAATTCCAAGGAAGATGAGAAGAAGACTAAAAAGTAG

Protein sequence

KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRGRLDCLSCYESIPKEELYVCILISHIDSLVRVGEVCEKSEVSIEIFRCIKVDSAEACIWYVKHRISWSNNQENDQSGNSKEDEKKTKK

Homology

[Close]

BLAST of Cp4.1LG06g08130 vs. NCBI nr
Match: KAG7024994.1 (hypothetical protein SDJN02_13814, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 7.57e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNR 51
          KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNR
Sbjct: 6  KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNR 56

[Close]

BLAST of Cp4.1LG06g08130 vs. NCBI nr
Match: XP_038897655.1 (sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897656.1 sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897658.1 sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 8.12e-15
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT DSVEKV++ESNTEKSVEDSK EDK N SSD+ G
Sbjct: 196 KKALALLVESEKGNGSAVSSSQTDDSVEKVEAESNTEKSVEDSKLEDKENHSSDILG 252

[Close]

BLAST of Cp4.1LG06g08130 vs. NCBI nr
Match: KAE8646035.1 (hypothetical protein Csa_016708 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.05e-13
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT DS EKVK ESNTEKSV DSK  DKG++SSDV G
Sbjct: 197 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLG 253

[Close]

BLAST of Cp4.1LG06g08130 vs. NCBI nr
Match: XP_004139770.1 (sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.85e-13
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT DS EKVK ESNTEKSV DSK  DKG++SSDV G
Sbjct: 197 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLG 253

[Close]

BLAST of Cp4.1LG06g08130 vs. NCBI nr
Match: TYJ98710.1 (sufE-like protein 1 [Cucumis melo var. makuwa] >TYK23198.1 sufE-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 3.76e-12
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+SSDV G
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLG 256

[Close]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL
Match: A0A0A0K8K1 (SufE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.78e-13
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT DS EKVK ESNTEKSV DSK  DKG++SSDV G
Sbjct: 247 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLG 303

[Close]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL
Match: A0A5D3BG00 (SufE-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002300 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.82e-12
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+SSDV G
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLG 256

[Close]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL
Match: A0A1S3BJ54 (LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490176 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.82e-12
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRSSDVRG 57
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+SSDV G
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLG 256

[Close]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL
Match: A0A6J1CDH0 (sufE-like protein 1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010451 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.23e-08
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNT--EKSVEDSKSEDKGNRSSDVRG 57
           KKALGLLVESEKGNGSA+ SS+T DSVEKVK +SNT  E  + DSKS + GN SS V G
Sbjct: 196 KKALGLLVESEKGNGSAIPSSKTDDSVEKVKLDSNTDSENPIGDSKSGNGGNDSSGVLG 254

[Close]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL
Match: A0A6J1FMC1 (sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446705 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.21e-07
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNT--EKSVEDSKSEDKGNRSSDVRG 57
           +KALGLLVESEKGNGSA+SSSQ  D+VEKV+S+S T  EK  E+SK  DKG+ +S V G
Sbjct: 225 RKALGLLVESEKGNGSAISSSQIDDAVEKVESDSKTDAEKPNEESKLGDKGSDNSSVLG 283

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08130 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g08130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024994.1	7.57e-20	100.00	hypothetical protein SDJN02_13814, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038897655.1	8.12e-15	84.21	sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_0388976...	[more]
KAE8646035.1	2.05e-13	82.46	hypothetical protein Csa_016708 [Cucumis sativus]	[more]
XP_004139770.1	2.85e-13	82.46	sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus]	[more]
TYJ98710.1	3.76e-12	80.70	sufE-like protein 1 [Cucumis melo var. makuwa] >TYK23198.1 sufE-like protein 1 [...	[more]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8K1	1.78e-13	82.46	SufE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 S...	[more]
A0A5D3BG00	1.82e-12	80.70	SufE-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A1S3BJ54	1.82e-12	80.70	LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis...	[more]
A0A6J1CDH0	3.23e-08	69.49	sufE-like protein 1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 ...	[more]
A0A6J1FMC1	2.21e-07	66.10	sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Cp4.1LG06g08130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08130.1	Cp4.1LG06g08130.1	mRNA