Cp4.1LG06g08040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g08040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	COP9 signalosome complex subunit 6
Location	Cp4.1LG06: 5544896 .. 5554518 (+)
RNA-Seq Expression	Cp4.1LG06g08040
Synteny	Cp4.1LG06g08040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTTTTATTTTTAACATTAATAATGTAAAATAATTTAAATAAATAAATAATTTTAAAAAATAGAAATATATTATATAAATTGAAAGTTTTAAGATGAAATTACAATATACATAAATGTGCACGAGTTAACTGTAAAGCTTCGAAGCGCACGGGAACTTTCTCTTCAGCTTCTTCCAGAAAAGTTTCGGAGATTGCCGAAAACAGAGCATTGATGATGGATGGGAATTGAAGAACGAAGTGGAAGATTTCGGTAAACAGTGTTGAATCCACTACTTTGTGTGTTCCATTCTCTCTGGTTTTGATTTCTAGGTCAAGCAAATCTTGGATCCTCGATCGTTTGTTCCTTGTTTTGTTGCAATCGATCATGGCGTCCTCTGGCAGCGGATTGACATTCAAGCTGCACCCTCTTGTGATTGTGAACATTTCCGATCACTACACTAGGGTTAAGTCTCAGATGAATCCTCCGTCATCTTGCTGCTCAGCTCCATCTCCTTGCGCCTTGAGTAATGACGCCGATGTAGCCGATTCTGTGGACCCTACCACTTCTCCTCCCGCACCTAGGGTTTACGGTTGTGTTGTTGGTGTTCAGAGGGGCCGCACCGTTGAGATCTTTAACAGCTTTGAGCTTCTTTATGACCCCAAAACTCAATCACTCGACCGCACTTTCCTTGAGAAGAAGCAAGAGCTCTGTTAGTAATTTCCGACATCTCTTTCATTTTTCTTTCGCTTTTTGGTTAGTGTTGATTTTGTTGTTTATGATGATTGAGTTGGTCTCTTATTTGGAACAGATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTGTGAGTTTCCATTTAAACTGCTGTCTTACTATCTTGGCACAGAGTTGTTTACATGGCTTTCACATTCTCAAGTATACTGCGCCTATTGAAATTTTAAACGGACTCTTAATTCCTATAGAATTTTATTTGCGCACCTGAGAATTGTGAGTCTTAGTTTCACCGGACTTCCGTAGTTATTAGATAGGTTTTCTTTTAGATTGGAGTCTGTTCTTTCTTAATTAGGGTTTGAATTCCTTTTGTAGGGATGAATTTTTGTATGTTCTTGTATTTGTTTTTCATTCTTCTTGATGTGATGAGAACTTGGTTTCTCATTAAAAAAACACATACCTGAGATTCAAAAGATGTCCAATTGATTTAGTATTAACTCTAATACTTCTTTCTGCCTCTCTCCCTGCGTACGTATGCGTGTGGATGCGCGTACAGATCTTCCTGCTCAATCGCTTCCTTGAAAAGACTCTCCAGACCCTTTACAGCGCTTCCATAGTCACCGCAAGTAGTTTTACTCCCTTCAAAGAATAACAATTTTCTCAACTTTTAGCCCAATTTCTTACTCCTTTTACTTAGAATCACACAATTTGAACTCCTATAATGCCTCTAATTTCAATAAGCTCATCCTACTTCGCCTTGAAAATACAATGAATGTATTTTTGGTGAAATGGTTTTGGAAATTTTAGTTGGAGCTTGATTCTTTGTGGCGAAGGATATCCTTTGTTCTCTCGGTTTATTAAATGTTGTATTAGGGATGGTTCAAATACCTACTTCTAGAAGGATTGTTCGGTGGGAGAGAAACCTTAGTATTCCTTGTTCCCTAGTCTTTACTACCTGTCAGAGAAGATGTTACACTTGATGTTCTCTATCTTGCCTTCCTCTGACAATTCTTCATTTTCTTTGTTGTTGTGCACTTTTTGATCGTGAGGCTTGTGAGATTGTCAATCTCCTATGCTTTTGGGAAGAAGGGATTCTCGGACTTGCCTTCCAAAGCTCTCGAGGGCGTTTCCCGTAGTTATTTGTTTGGATTCTTTGTGCCCCTTCTTCCCCTAAGGGTCTACGTGTTTCTCCCTTTAGAATGTTAAAATTCCTTANTTTTTTTTTTTTTGCATGGAAAGTTTTGCATGGGAGAGTGAGTACTCTTGATCTTATCTAGAGGCTTTCTTCCATGGTGTTTTGTTGTGTCTTTAATGGTCTGCCCTTTGTAGGAGAGAGGAAGAGGATCTTGACTATTTATTTGGGATTGTGTGTTTGTTACCTCCTTGTGGAACAAATTTTTTTAGGACTGTTGGGCTTGTGCTTGCTCGCAATAGAGGTTGTTGTTTGATATTTGAGGTGGTGCCCTTGAATTGTCCCTTTCGTGACAAAAGAAAGGGCTCTTTGGCAATCTCAATGTTTTTTACTTTGTTGTGGAACATTTGGCTGAATAGGAATAGTAGAATTTTTTCGTGGGGTTAAGCAATCTAGGGAGGACCTTAGGCACGTCTTTGATTTGATTCATCCATGTGGGCCACTGTTAATACAATTTTTTTTTGTAATTATTAGTTTAGTATGATTCTTTTGGATTGGAGCCCCTTGTTGCAATTGGGTGTGTGGGCTATTTTTTTTTTGGGCTTGTTTTTGTATTGCCCGTATTTCCTTTTTATCTATGTCAATGAAAGCTAGTTTCTCATAAAAGAAACTGATGAATGTATTTCCAGTATTTTTTATTAGGTTTCCTAACCTTAGATTATTGACAGCTTTTTGCCGAAGACAATCGCCTTTTTAGTAGTTCCCTCTTATCAAGAGGGTGTACAAAGTGTGACTTTCAACTAGCTCAATGCTCATCAAATTTAGATGGGAGGTCTACCGTGGAGAATGTATTTCTTGCGTTGTTATTTAAGTGTCGAATGAAAGAATGGTATTGTTAGGATCTATTGATATGTTCAGAGTATAGATAAGATTATGATCACTACACAAAGCTCCCTCCCTCCCTCCCTCCCCTTCTCAAACCTTAACCTTGGCCTCCCACCGCCACACCTCAGTCCTTTGGGGATTTGAGAATGGAACTAGGAAGCACCTTTCTCTTCTTTCTACCAATGCCTTAGGTAGTTTATCTTGTGGAAATTAGTAACTAGGTAATTGGTCTGAAGTTCTTATTTTTAGTTCTCTTGGCTCTCTGTGTGAGGGCAAAGGAATGTTTCATTTGTATTCCTACCATACCCTCTCTGAAAACTTTGAACCCTCAAACTAAATCTTCTTCTATCTCTCAGCTGTCCAGGGAAGAAAGAAAAATACATATTTATATTAAGTGGAAGGGGGAATTGGGTGGGGGCAAGGATGGAGAATATAATATTGTCCCCTGCCCCATTTATCTAACGGGGAAAAAATATTCCCCACTCCCCGTCTAAATGGGGGATCCCCTTCCCATTCGGGGTGGGGGCCCCGTAGATAAAATTGATATCTCTACTTGCAAGCTCAGAAAAAGTAATTGAAAGTCCAAAAGAACTAATCGCAATTGATTCACCGCTTGCAAGTCCTCTACTGAAGAAGCAAGTTAATCACACTTTCTCACACATTCCACCCAGCAACCCACCCAACAAACCTATTTACACTATTCTGCAAATCATCCGTGCATTCCACTACTCCACTATTCTAATTCCACTTAGTGAGCAAATCCAACAAGCCCTCACTACTAATTCATCTGGTACACCATTCGGACACACATTCCACTATTCCAACCAGCAATAGAGGAAGAACAAGGTCCTTTCAAATATTCTTGTAATAGAGGAAAAACAACCTCATCCTAACAATCACTCGCATAAGGTTGTGATATTCATAAATGAAGCAGAAACTTGAAGTAGATGTTGCAGTTTCATGTGTGTAGCCCATTTCCACTAGAAGTTTGAGCAGCAATTTTGGCACTCAACTGGTTGAGAATCCAGAATTTTAAGGAAGGTCCAAGTAGCAAGGAGGTCCATAATATAATATATCATACTTCAAATGGGAAATAGGATTTATTTTCTTCCCTTTTGATTATTTCACCATCATGTCAAGAAAAATCTCAAAACGTTCTTCCAATTGTCATCACAAATCATCAAATTCCGAGATTCATATTTGAAGTATTTAATAATGGAGGGAACCAAGGTGCTGGAGGAAGAAAAGGAGGGGATAGAACTAAGATCTCCAATTCCGTCAAGGCGGGACTCCAATTTCCGAGTGGGAGTATCGGATGGTACCTTAAGAAAAGCCGCTACTTGAGAAGTGAGCACTAGAGAGACACAACGACCGTGGAGGTACTCCAAGAGTGAGCATGAGAGAGACTAGCAACGTCCATGGAAGTGCTCCAAGCGGAGTGAGCATGAGAGAGACGAGCAATGCTTGTAGAAGTGCTCCAAGAGGAGTGCGCACGAGAGAGACAAGTAATGCCTATGGATGTGCTCCAAGAGGGATGAGCACGAGAGATGCAAGTAACGCCTGTGAAAGTGCTCTAAAGGGATAGCATGCATGAGTTATGTGTTCTCACAACTTCAACTGATAGATGTGCTAACAAAAGGACTTCATAGCTTACTACATCTTGAGTTAGTATCCAAGCTATGAATGAATGATATCTATTACTCAGCTTAGGAGGAGTGTCGAAGGATTAGCCTTAAGTTGGGAGATATTTGTGTAATCCCATTAAGTATGGGAAGTAGACGACCTCCCTAATCTATCTCTATTATTACTTAGTATCTAGGGGTTTATTTAAATTTATTGTTACTTGCTATCTAGGGGTTTAGTTAGGCTTTTTGTATTATATAAAAGGCACATGTACCTCTTTAAAAATTAATAAGAAAAACAACAAGCTAATTTAGACCTGCAACATATATGACCGATGATTCTAGTTTGTGAAGGTCACTCAAAAGTTTTGTAATTTGGCACTAAGATTTCTAGTTTTAGGTATGTTTATTCTAATAGGAACTCCCTATTCTACCTTTTCTGATTGGTTAATGGTGAAAAAAGCAAGCAAACATTCAAATGCCTTTAAAATCACAAGTTCATAGAATGAGAGGGCATTGGTGATAGGGTTCATCCCCTTGCTTGATGACTTTTCCTGGAGGCTATGCAAAAGAGTTTTGCTGCAGTAGTATTATAACCCTTTCCCTTGAGGGTTGGGGGGTTGACAGGAGTTAGGGGTGGGCTTAATGAAAGTAGTGTCATGCCACTCTTTTAGCATCCATCTTACAGAGAAGTTTCTAGTTTACTGGCCGATGTTTTCCAGTCTTTACTCTTTGGAAATTTATTTCTTTACTAGAGTTCAGAATATGTTCACATATATATATATATATATATATATATTTTCCTTTTTCTTTGTCTTTTATGACAAGGTGCCACATTGAATATTATGATATGATAAAAAACTTCTGAAGGCCAGCCTTTGTCTAGTTCTATTCTCTCAAAGATATTTTTATAATATGCGTGTTCTCTAACTCTGTTCAAAGGCAATTGAAGGTTCTTTGTAATCTTCCTAGCCTTCTTTGGGAGGATGGGTAGCTTAGTTTATGTATTAGCATTCAATGTTGAAATTCAATTTCTTACTTGAACAAGAGAAAGTATATAGTTTGATAGATGTAATTGTATCTGTTTTCTTGGATGGGAAATTAGAATATGGTAATGGATACAATTCTACTTTTGTTAATTTTGATGAGCTTTCTGACTTAACAGTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCAGTCACGATTTATGAGAGTGGTAATATTTCTTGTTTCTTTTCTTCTTCTTTGCATGGTTTTTGTCTGCAGTGTGTTATCAATAAATTTCTTTGGTTATATGATCATTTGTCTTCATCATTCTTATGTCAATTCTCAGGTATATCATCCATGATTTCCTTGGTGTTGAATATTAGTGCGCATAGTTTGGTTTTCATGTACTCAGGAATTGTTATCTTATTCTGAAACCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATCTTTTGGCATTCAAACTATCATGTTGGGAAGCATCAAGAAGTCTATAACTTTTCTCTTGGATGGTCACAAGTTCAAGGGATAGTAACAGAGTTATTGGCAATTGATCCATTCTGTGTGAAGTTTCAACCAAAAGAAATTGGAAAGTATTCCAAGCTTTAGTAAGCTGTTTTCTGGGGAACTGTTAGGAAAGAACTATCCGTATATTGCCAAGAGGAAAATTCTGGAATGCTGATGATATGGTATTTGTCTTTGGGCTATAATACTTCTAAGATAAAAAATATATATTTGGTGTATAATATGGATTATATTTGAGAAGAGAATGTGAAACTTTGACTTTTTAAATTATGAGGTCTTTTTAAATGCCTGGCATACAAATTTGTTGCATTTATCACCCAATCCACCCAATTTCACCTTCAGGGGGACATTTGTTCAAAACTTGAAACATTTTCATCTTGTCCTCAATTTAGAGATGTCACATAGAAAACAACAAACAACATATTGCATGTGGCAGGTCACAAGGGTGTGCGCAGTCACGGCATTTACTGTCTAAATTGATTGTTAGATTTTGATATAGAGGGGACAGGCAAGATAATTATGAGTAATTATGAGTAAAAAATAAAAAATTTGGGCTCTTAGAAAGCTATTTTAACCAAATGCCTTCTAAGGGTGATTGTCATGAGGTGGCCTAAGTGGACTTAGGTTTTGTTTTTGTGCACCCCAATGAAAATTACTTGTCTTGCTCTTAAATTACTCGTTACCACAATATTCCCATGGTAAAATTCCACTAGAAAAAGATTGAGAAAAAAATTGTTTGCATGGTGGTATTAACTCTTGTTTTTTGTTTGTGATTTCTACAACTATAGAGCTACATGTTATTGAAGGGATTCCTCAGCTAATTTTTGTTCGTTCAAGTTACACCATAGAGGTTTGTTTGCTTGGTCTCTCCTTGAGTCCTTCAAACTTGTTGCAATTCCGGTTATTGAGTTTCTCGCAAATTTTCCTGTTCTTACTCTTTAAAGACAGTAGAAGCTGAGAGAATTTCTGTTGATCATGTTGCGCATTTGAAACCATCTGACGGAGGCTCTGCTGCTACTCAACGTGAGTGATCCAATACCTCTTTGTATTTCAATCGGGGGTTAAACCTCGTTATTTCTTACTGCCAGAAAGAAAATTATTATGATTTGATATGTTATTGATATGTTTATAATGAGAGAAATTTTGTCTTCAATTTAGTGGCTGCTCACCTTGCGGGCATTCACAGTGCCATCAAAATGCTAAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTATTTTCTTTTCTGTACTATGCATAAAAATGTTTATGATGAAAAATTTTAGGGTATAAAAGGCCAGGGTGGTTATTCCTTTCCTTTTTATCAGTTGTGGTTAGGCTCTGATTTCTGATGATTGTCAGAACACGAGTGCTACATTTAGTGGTTCTAACGAGCTTGTGAATTCTTCCTGAAACTTGTCATTAAATGGCTCAATTTGAGATTTTTTCTATTCTGATTAAATGGCTCAATTTGAGATTGATATTTTCTATCTGTTATTCTTTGTATCAGGGGATGTTCCCATGGAGAGTTCCTTACTAAGGCAAGTGTCAAGTTTGCTCAGAAGATTGCCGGTTACTGAATCTATAAAGTTTCAAGACGATTTCTTGATGGTGAGTGCTATCGCGCATCTCACATGTTATTTCCCTGGCCCTGGTTTTTCCTGCAGTTAAAATTTAAATGTTTGCACCAAAAATTTAGACATTGCTTTGATTCTGTGACTAGTTATTCTTACTTCCATAATGTCCCTCCTTTCAGGACTATAATGACACAATGTTGATTACATATCTAGCTATGTCCACTAATTGCTCAAGGTATGATATTTCTGATCATATTGTATACTTTAGATGTGGAATACTCTGTATGTGGCTGCTAACTAGATTAGAATCACAAACATATGCTCAGTATCATATGATCTCGAAAAATAGAATCGATACCCTGGAAATGCCAAGTGCGTGGTAAACAAAGTACGTTTTTTAGAGAGCAGTATTTGTAAACATTTCTACCCATTTTGACTTTTTCAGAGCTTATTTGATATCAAATTTAAACATTTTTTTTTTCATTCTAATTGTCAATTTAAGGAAATTTACTATTTCCCCAACGACGATCTCACAAACAAAAAGCTGTCGTCTCAAATTCATTTCCCACATATTTACTCGTCACATCATTGGTTTAAGTGGATTTTTTAGTTACTAAAATGTTTCTTTTTCGACTTATGCTAGTCAAATTGAAAATTTATCAATTATCTCATTTCCATATGTATATTTTCTTCATTCCAAGTATGTTTGAATTTGGAAGGGAGAAACTTACGTTCTAGATTGCATGTTGAGTGTACTTGAGTATGTCTATATTGAATGAATGTTCAATGTGGATGCACGCTCATACCCTTAGTGTTGGTAGCTTGTATAATTTTTCTAATGTTATCAAGCATTACGTAGTTGGGATCTTGTCCCTAAAATGCGTCCATGCATGTGTACATGTAGAGTCTGCTTTTGCAAATATGTACGCTGTACATTTACCTCTTCCAACTGATATTTGCTTTTACATTTATAAAAGTTCAAAACTCCTTCCTTTTAGTGAAAAAAAAAAAGGTTGATTCTTCTTCGGCCCTTCCCTATTTACCGAGTGAAAGAAAAACGAACAAGAATGAGGGAAGACTATATATAAGCTGATCCTCTACTAATGTAACTAAGGGGCAGCATTCTTAATTGGCCAATTTCAAGTTATCTGGTTGATGGATAAGTTAACTGTACTTCTTTTTGGAGCATTTGTGCTTCTTTCTCCTTGGTTTTGCATGCATACCAGTAATTATCAAACATTCCTTTGAGAGTATACTACCATTGTGAGAATGTCGAGCACTAAGTTGATAGTATATTACCCTATGCGTTGTCCTAGCATTAATTCTTGTATTATCTGTTCGCACTGTTCTTTTTCCTCTCCTAACCTCACACCCAACACTAACTTTCCAGTATAATGAACGAGCTGATCGAAAAGTTCAACACTGCATACGACCGACATAGTCGAAGAGGTGGCCGAACAGTTTTTATATAAAACCCCAACTGTCAACAGAAAGTTCAGGTACTTCAATGATACTGCTAGGATTTGAGTGGTTCTGAAAGCATGACATAGGAATTACTATCTCTTTTGTTTTGATTTTTTGCTCTTAATTCCTATGTATGGATGCTGTAGAAGTGAAAAATGGTTTGAACATGCATGATTTCCCTCCCTTTCCCTCTACATAAGGCCATCTGTTACACATATGAGGACACAGTTTAGCTCTAGAGGATGCAATATGTAATTCGAGAGAGATTAATGGGCAAGCCCTCCTCAAAAGGGTAGACTAGTTGAGTCGACTTTACTTCCTTAAATCATCCTTTGATACTTCCCCCAGTTTTAAGATGCATATTACTCTCCACCTATCTACAGTCAGATCTTATGATGGAGAAGTATTTTTCTTTGTGAGTTGTGTAAAAAATCTCGTATCAGTTTTTATCGTAAACTTTCGGTTTTATTACCGTGGACCTTATATACTTAAACAAGCGTGTAGCAACTTCTGCCCTTGTTATTTTCAGTTAATTTACTTGCTAATTAACGACTACTTATTGGTTTAAACCTTGTATGTA

mRNA sequence

ATGTTGAAAAGTTTCGGAGATTGCCGAAAACAGAGCATTGATGATGGATGGGAATTGAAGAACGAAGTGGAAGATTTCGGTAAACAGTCAAGCAAATCTTGGATCCTCGATCGTTTGTTCCTTGTTTTGTTGCAATCGATCATGGCGTCCTCTGGCAGCGGATTGACATTCAAGCTGCACCCTCTTGTGATTGTGAACATTTCCGATCACTACACTAGGGTTAAGTCTCAGATGAATCCTCCGTCATCTTGCTGCTCAGCTCCATCTCCTTGCGCCTTGAGTAATGACGCCGATGTAGCCGATTCTGTGGACCCTACCACTTCTCCTCCCGCACCTAGGGTTTACGGTTGTGTTGTTGGTGTTCAGAGGGGCCGCACCGTTGAGATCTTTAACAGCTTTGAGCTTCTTTATGACCCCAAAACTCAATCACTCGACCGCACTTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCAGTCACGATTTATGAGAGTGAGCTACATGTTATTGAAGGGATTCCTCAGCTAATTTTTGTTCGTTCAAGTTACACCATAGAGACAGTAGAAGCTGAGAGAATTTCTGTTGATCATGTTGCGCATTTGAAACCATCTGACGGAGGCTCTGCTGCTACTCAACTGGCTGCTCACCTTGCGGGCATTCACAGTGCCATCAAAATGCTAAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGGGATGTTCCCATGGAGAGTTCCTTACTAAGGCAAGTGTCAAGTTTGCTCAGAAGATTGCCGGTTACTGAATCTATAAAGTTTCAAGACGATTTCTTGATGGACTATAATGACACAATGTTGATTACATATCTAGCTATGTCCACTAATTGCTCAAGTATAATGAACGAGCTGATCGAAAAGTTCAACACTGCATACGACCGACATAGTCGAAGAGGTGGCCGAACAGTTTTTATATAAAACCCCAACTGTCAACAGAAAGTTCAGAAGTGAAAAATGGTTTGAACATGCATGATTTCCCTCCCTTTCCCTCTACATAAGGCCATCTGTTACACATATGAGGACACAGTTTAGCTCTAGAGGATGCAATATGTAATTCGAGAGAGATTAATGGGCAAGCCCTCCTCAAAAGGGTAGACTAGTTGAGTCGACTTTACTTCCTTAAATCATCCTTTGATACTTCCCCCAGTTTTAAGATGCATATTACTCTCCACCTATCTACAGTCAGATCTTATGATGGAGAAGTATTTTTCTTTGTGAGTTGTGTAAAAAATCTCGTATCAGTTTTTATCGTAAACTTTCGGTTTTATTACCGTGGACCTTATATACTTAAACAAGCGTGTAGCAACTTCTGCCCTTGTTATTTTCAGTTAATTTACTTGCTAATTAACGACTACTTATTGGTTTAAACCTTGTATGTA

Coding sequence (CDS)

ATGTTGAAAAGTTTCGGAGATTGCCGAAAACAGAGCATTGATGATGGATGGGAATTGAAGAACGAAGTGGAAGATTTCGGTAAACAGTCAAGCAAATCTTGGATCCTCGATCGTTTGTTCCTTGTTTTGTTGCAATCGATCATGGCGTCCTCTGGCAGCGGATTGACATTCAAGCTGCACCCTCTTGTGATTGTGAACATTTCCGATCACTACACTAGGGTTAAGTCTCAGATGAATCCTCCGTCATCTTGCTGCTCAGCTCCATCTCCTTGCGCCTTGAGTAATGACGCCGATGTAGCCGATTCTGTGGACCCTACCACTTCTCCTCCCGCACCTAGGGTTTACGGTTGTGTTGTTGGTGTTCAGAGGGGCCGCACCGTTGAGATCTTTAACAGCTTTGAGCTTCTTTATGACCCCAAAACTCAATCACTCGACCGCACTTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCAGTCACGATTTATGAGAGTGAGCTACATGTTATTGAAGGGATTCCTCAGCTAATTTTTGTTCGTTCAAGTTACACCATAGAGACAGTAGAAGCTGAGAGAATTTCTGTTGATCATGTTGCGCATTTGAAACCATCTGACGGAGGCTCTGCTGCTACTCAACTGGCTGCTCACCTTGCGGGCATTCACAGTGCCATCAAAATGCTAAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGGGATGTTCCCATGGAGAGTTCCTTACTAAGGCAAGTGTCAAGTTTGCTCAGAAGATTGCCGGTTACTGAATCTATAAAGTTTCAAGACGATTTCTTGATGGACTATAATGACACAATGTTGATTACATATCTAGCTATGTCCACTAATTGCTCAAGTATAATGAACGAGCTGATCGAAAAGTTCAACACTGCATACGACCGACATAGTCGAAGAGGTGGCCGAACAGTTTTTATATAA

Protein sequence

MLKSFGDCRKQSIDDGWELKNEVEDFGKQSSKSWILDRLFLVLLQSIMASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIMNELIEKFNTAYDRHSRRGGRTVFI

Homology

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot
Match: Q8W206 (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=1 SV=2)

HSP 1 Score: 498.0 bits (1281), Expect = 9.0e-140
Identity = 253/324 (78.09%), Postives = 282/324 (87.04%), Query Frame = 0


Query: 50  SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSP 109
           SS SGLTFKLHPLVIVNISDHYTRVK+Q+NPP+S C++      SN+ +     +     
Sbjct: 4   SSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHG---SNNGEAMFQQN----- 63

Query: 110 PAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGWY 169
             PRVYGCV+GVQRGRTVEIFNSFELLYDP TQ+LDR+FLEKKQELYKKVFP FYILGWY
Sbjct: 64  --PRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWY 123

Query: 170 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 229
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INH QKDLPVTIYESELHVI+GIPQLIF
Sbjct: 124 STGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIF 183

Query: 230 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 289
             +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+  L
Sbjct: 184 AHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNL 243

Query: 290 LAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIM 349
            AMQ GD   ++S+LRQVSSLLRRLP  ES +FQD+FLM+YND +LITYLAM TNCSS M
Sbjct: 244 AAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNM 303

Query: 350 NELIEKFNTAYDRHSRRGGRTVFI 374
           NE+++KFNTAYDR++RRGGRT F+
Sbjct: 304 NEMVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot
Match: Q8W1P0 (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=1 SV=2)

HSP 1 Score: 487.6 bits (1254), Expect = 1.2e-136
Identity = 242/324 (74.69%), Postives = 282/324 (87.04%), Query Frame = 0


Query: 50  SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSP 109
           SS SGLTFKLHPLV++NISDH+TRVK+Q+NPP+      + CA  N ++ AD++      
Sbjct: 4   SSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPA------ASCATGNGSNNADAM----LL 63

Query: 110 PAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGWY 169
             PRVYGCV+G+QRGRTVEIFNSFEL++DP   +LDR+FLEKKQELYKKVFP FY+LGWY
Sbjct: 64  QNPRVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWY 123

Query: 170 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 229
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INHAQKDLPVTIYESE HVI+GIPQ IF
Sbjct: 124 STGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIF 183

Query: 230 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 289
           V +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+ ++
Sbjct: 184 VHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHI 243

Query: 290 LAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIM 349
           +AMQ GD P E+S+LRQVSSLLR LP  ES KF ++FLM+YND +L++YLAM TNC+S M
Sbjct: 244 VAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNM 303

Query: 350 NELIEKFNTAYDRHSRRGGRTVFI 374
           NE+++KFNTAYD+HSRRGGRT F+
Sbjct: 304 NEVVDKFNTAYDKHSRRGGRTAFM 317

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot
Match: Q6ZKM2 (COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN6 PE=1 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 3.8e-130
Identity = 239/326 (73.31%), Postives = 274/326 (84.05%), Query Frame = 0


Query: 49  ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTS 108
           ASS SGLTFKLHPLVIVN+SDH+TRVK+Q     + CS           D A S      
Sbjct: 21  ASSSSGLTFKLHPLVIVNVSDHHTRVKAQ-----AACS----------GDGASSAAAGGQ 80

Query: 109 PPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGW 168
           P  PRV+GCV+GVQRGRTVEIFNSFEL+ DP + +LDR FLEKKQELYKKVFP FY+LGW
Sbjct: 81  P--PRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 140

Query: 169 YSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLI 228
           YSTGSD  ++DM IHKALMDINESPVY+LLNP+IN +QKDLPVTIYESELHVI+G PQLI
Sbjct: 141 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLI 200

Query: 229 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSY 288
           FVR++YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSR+R++H Y
Sbjct: 201 FVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQY 260

Query: 289 LLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSI 348
           L++MQ GD+P+++SLLRQVSSL+RRLP  ES KFQDDFLM+YNDT+L+TYLAM TNCSS 
Sbjct: 261 LVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSST 320

Query: 349 MNELIEKFNTAYDRH-SRRGGRTVFI 374
           MNEL+EKFN  Y+R  +RRGGR  F+
Sbjct: 321 MNELVEKFNATYERSTARRGGRGAFM 329

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot
Match: Q54C92 (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 7.5e-62
Identity = 132/320 (41.25%), Postives = 196/320 (61.25%), Query Frame = 0


Query: 49  ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTS 108
           +++ SGL   LHPLV++NISDH+TR K Q N   +C                        
Sbjct: 20  SANSSGLEVDLHPLVLINISDHFTRTKVQSNYQDNC------------------------ 79

Query: 109 PPAPRVYGCVVGVQRGRTVEIFNSFELLYD--PKTQSLDRTFLEKKQELYKKVFPHFYIL 168
               RV G ++GVQ GR VEI NSFE++Y    K   LD  +L KK   Y+++FP + +L
Sbjct: 80  ----RVIGVILGVQNGRNVEICNSFEMVYATVDKQLVLDIEYLRKK---YEQLFPLYDLL 139

Query: 169 GWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQ 228
           GWYSTGS   + D+ +HK + + NESP+Y++L+   +   KDLPV IYESELH++   P 
Sbjct: 140 GWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPT 199

Query: 229 LIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILH 288
            IFV++ Y I+T EAERI V+H+A + PS  GS  + L +HL  +H+AI MLN R++ L 
Sbjct: 200 TIFVKTPYKIQTGEAERIGVNHIAKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALS 259

Query: 289 SYLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCS 348
            YL A++   +P E ++LR+ SSL  +LP  ++  F+  +L +YND +L+TYLA  T  S
Sbjct: 260 DYLQAVKEKRLPYEQNILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTS 305

Query: 349 SIMNELIEKFNTAYDRHSRR 367
           + +N+ I+K+  + ++ S+R
Sbjct: 320 ASLNDTIDKYLVSNEKQSKR 305

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot
Match: Q6NUC2 (COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-56
Identity = 125/322 (38.82%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 44  LQSIMASSGSG-LTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADS 103
           L S+MA   +G +T  LHPLVI+NISDH+ R++SQ   P                     
Sbjct: 18  LPSVMAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPM-------------------- 77

Query: 104 VDPTTSPPAPRVYGCVVGVQRGRTVEIFNSFELL--YDPKTQSLDRTFLEKKQELYKKVF 163
                     +V G ++G Q GR +E+ NSFELL   + +  ++++ +   K+E +K+VF
Sbjct: 78  ----------QVIGALIGKQEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVF 137

Query: 164 PHFYILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHV 223
                LGWY+TG     SD+H+HK + +I ESP+++ LNP   H   DLPV++YES + +
Sbjct: 138 KDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHT--DLPVSVYESVIDI 197

Query: 224 IEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNS 283
           + G   ++    SYT+ T EAERI VDHVA +  +  G  +T +A HL   HSAIKML+S
Sbjct: 198 VNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHS 257

Query: 284 RIRILHSYLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLA 343
           R+R++  Y+ A + G+VP    +LR+ S+L   LPV  + KF+ DF    ND  L++YL 
Sbjct: 258 RVRLILEYVRAAEGGEVPFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLG 306

Query: 344 MSTNCSSIMNELIEKFNTAYDR 363
             T   + MN+ + KFN  YDR
Sbjct: 318 TITKTCNTMNQFVNKFNILYDR 306

[Close]

BLAST of Cp4.1LG06g08040 vs. NCBI nr
Match: XP_022936414.1 (COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_023536062.1 COP9 signalosome complex subunit 6a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 643 bits (1658), Expect = 1.29e-231
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. NCBI nr
Match: KAG7025007.1 (COP9 signalosome complex subunit 6a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 640 bits (1650), Expect = 2.14e-230
Identity = 325/326 (99.69%), Postives = 325/326 (99.69%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMN PSSCCSAPSPCALSNDADVADSVDPTT
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNTPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. NCBI nr
Match: XP_022976289.1 (COP9 signalosome complex subunit 6a-like [Cucurbita maxima] >XP_022976291.1 COP9 signalosome complex subunit 6a-like [Cucurbita maxima])

HSP 1 Score: 639 bits (1648), Expect = 4.32e-230
Identity = 325/326 (99.69%), Postives = 325/326 (99.69%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVD TT
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDLTT 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. NCBI nr
Match: XP_038897789.1 (COP9 signalosome complex subunit 6a-like [Benincasa hispida])

HSP 1 Score: 616 bits (1589), Expect = 4.22e-221
Identity = 311/326 (95.40%), Postives = 319/326 (97.85%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSAPSPCALSN +DVADS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGSDVADSADPST 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGD+P+E+SLLRQVSSLLRRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           +MNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 VMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. NCBI nr
Match: XP_008447803.1 (PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo])

HSP 1 Score: 614 bits (1583), Expect = 3.46e-220
Identity = 309/326 (94.79%), Postives = 317/326 (97.24%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSAPSPCALSN AD  DS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPP PRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGD+P+E+SLLRQVSSL+RRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           +MNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 VMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL
Match: A0A6J1FDK7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041 PE=3 SV=1)

HSP 1 Score: 643 bits (1658), Expect = 6.26e-232
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL
Match: A0A6J1IN37 (COP9 signalosome complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111476730 PE=3 SV=1)

HSP 1 Score: 639 bits (1648), Expect = 2.09e-230
Identity = 325/326 (99.69%), Postives = 325/326 (99.69%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVD TT
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDLTT 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL
Match: A0A1S3BI92 (COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 SV=1)

HSP 1 Score: 614 bits (1583), Expect = 1.68e-220
Identity = 309/326 (94.79%), Postives = 317/326 (97.24%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSAPSPCALSN AD  DS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPP PRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGD+P+E+SLLRQVSSL+RRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           +MNELIEKFNTAYDRHSRRGGRTVFI
Sbjct: 301 VMNELIEKFNTAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL
Match: A0A6J1CEF0 (COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010462 PE=3 SV=1)

HSP 1 Score: 605 bits (1560), Expect = 5.35e-217
Identity = 307/326 (94.17%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQ NPPS   SAPSPCALSN AD ADS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQTNPPSLTSSAPSPCALSNGADSADSADPST 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SP APRVYGCVVGVQRGRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPSAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDA+ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGD+P+E+SLLRQVSSLLRRLPVTES KFQDDFLM+YNDT+LI+YLAMSTNCSS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTLLISYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
           IMNELIEKFNTAYDRH RRGGRTVFI
Sbjct: 301 IMNELIEKFNTAYDRHGRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL
Match: A0A6J1FKS7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157 PE=3 SV=1)

HSP 1 Score: 599 bits (1545), Expect = 1.03e-214
Identity = 303/326 (92.94%), Postives = 314/326 (96.32%), Query Frame = 0


Query: 48  MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 107
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS   S+PSPCALSN ADVADS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSSSSPSPCALSNGADVADSADPST 60

Query: 108 SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 167
           SPPAPRVYGCVVGVQ+GRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQKGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 168 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 227
           WYSTGSDA+ESDMHIHKALMDINESPVYVLL+PSINHAQKDLPVTIYESELH+IEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLDPSINHAQKDLPVTIYESELHLIEGIPQL 180

Query: 228 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 287
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 288 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 347
           YLLAMQNGD+P+E+SLLRQVSSLLRRLPV ES KF+DDFL +Y DTMLITYLAMSTNCSS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVIESEKFRDDFLTEYTDTMLITYLAMSTNCSS 300

Query: 348 IMNELIEKFNTAYDRHSRRGGRTVFI 373
            MNELIEKFN AYDRHSRRGGRTVFI
Sbjct: 301 AMNELIEKFNIAYDRHSRRGGRTVFI 326

[Close]

BLAST of Cp4.1LG06g08040 vs. TAIR 10
Match: AT5G56280.1 (COP9 signalosome subunit 6A )

HSP 1 Score: 498.0 bits (1281), Expect = 6.4e-141
Identity = 253/324 (78.09%), Postives = 282/324 (87.04%), Query Frame = 0


Query: 50  SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSP 109
           SS SGLTFKLHPLVIVNISDHYTRVK+Q+NPP+S C++      SN+ +     +     
Sbjct: 4   SSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHG---SNNGEAMFQQN----- 63

Query: 110 PAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGWY 169
             PRVYGCV+GVQRGRTVEIFNSFELLYDP TQ+LDR+FLEKKQELYKKVFP FYILGWY
Sbjct: 64  --PRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWY 123

Query: 170 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 229
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INH QKDLPVTIYESELHVI+GIPQLIF
Sbjct: 124 STGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIF 183

Query: 230 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 289
             +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+  L
Sbjct: 184 AHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNL 243

Query: 290 LAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIM 349
            AMQ GD   ++S+LRQVSSLLRRLP  ES +FQD+FLM+YND +LITYLAM TNCSS M
Sbjct: 244 AAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNM 303

Query: 350 NELIEKFNTAYDRHSRRGGRTVFI 374
           NE+++KFNTAYDR++RRGGRT F+
Sbjct: 304 NEMVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of Cp4.1LG06g08040 vs. TAIR 10
Match: AT4G26430.1 (COP9 signalosome subunit 6B )

HSP 1 Score: 487.6 bits (1254), Expect = 8.6e-138
Identity = 242/324 (74.69%), Postives = 282/324 (87.04%), Query Frame = 0


Query: 50  SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSP 109
           SS SGLTFKLHPLV++NISDH+TRVK+Q+NPP+      + CA  N ++ AD++      
Sbjct: 4   SSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPA------ASCATGNGSNNADAM----LL 63

Query: 110 PAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILGWY 169
             PRVYGCV+G+QRGRTVEIFNSFEL++DP   +LDR+FLEKKQELYKKVFP FY+LGWY
Sbjct: 64  QNPRVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWY 123

Query: 170 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 229
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INHAQKDLPVTIYESE HVI+GIPQ IF
Sbjct: 124 STGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIF 183

Query: 230 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 289
           V +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+ ++
Sbjct: 184 VHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHI 243

Query: 290 LAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIM 349
           +AMQ GD P E+S+LRQVSSLLR LP  ES KF ++FLM+YND +L++YLAM TNC+S M
Sbjct: 244 VAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNM 303

Query: 350 NELIEKFNTAYDRHSRRGGRTVFI 374
           NE+++KFNTAYD+HSRRGGRT F+
Sbjct: 304 NEVVDKFNTAYDKHSRRGGRTAFM 317

[Close]

BLAST of Cp4.1LG06g08040 vs. TAIR 10
Match: AT5G05780.1 (RP non-ATPase subunit 8A )

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-19
Identity = 81/307 (26.38%), Postives = 138/307 (44.95%), Query Frame = 0


Query: 59  LHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSPPAPRVYGCV 118
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDSSKRVVGVL 78

Query: 119 VGVQRGRTVEIFNSFELLY-----DPKTQSLDRTFLEKKQELYKKVFPHFYILGWYSTGS 178
           +G      V++ NS+ + +     DP    LD  + E    ++K++    +++GWYSTG 
Sbjct: 79  LGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGP 138

Query: 179 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI---PQLIFV 238
              E+D+ +H        +PV V+++  +   +  +P   Y +   V E      Q +FV
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFV 198

Query: 239 RSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 298
             S  I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + SYL
Sbjct: 199 HVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRSYL 258

Query: 299 LAMQNGDVPMESSL---LRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCS 354
             +  G +P+   +   L+ V +LL  L V E +K    F +  ND ML+ YL+      
Sbjct: 259 DLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVK---AFSVKTNDMMLVIYLSSLIRSV 284

[Close]

BLAST of Cp4.1LG06g08040 vs. TAIR 10
Match: AT5G05780.2 (RP non-ATPase subunit 8A )

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-19
Identity = 79/304 (25.99%), Postives = 136/304 (44.74%), Query Frame = 0


Query: 59  LHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSPPAPRVYGCV 118
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDSSKRVVGVL 78

Query: 119 VGVQRGRTVEIFNSFELLY-----DPKTQSLDRTFLEKKQELYKKVFPHFYILGWYSTGS 178
           +G      V++ NS+ + +     DP    LD  + E    ++K++    +++GWYSTG 
Sbjct: 79  LGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGP 138

Query: 179 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSS 238
              E+D+ +H        +PV V+++  +   +  +P   Y +         Q +FV  S
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEENATQKSQKVFVHVS 198

Query: 239 YTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAM 298
             I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + SYL  +
Sbjct: 199 TEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRSYLDLV 258

Query: 299 QNGDVPMESSL---LRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSSIM 354
             G +P+   +   L+ V +LL  L V E +K    F +  ND ML+ YL+        +
Sbjct: 259 IEGKLPLNHEILYHLQDVFNLLPNLNVNELVK---AFSVKTNDMMLVIYLSSLIRSVIAL 281

[Close]

BLAST of Cp4.1LG06g08040 vs. TAIR 10
Match: AT3G11270.1 (Mov34/MPN/PAD-1 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-18
Identity = 82/307 (26.71%), Postives = 139/307 (45.28%), Query Frame = 0


Query: 59  LHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTTSPPAPRVYGCV 118
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDTSKRVVGVL 78

Query: 119 VGVQRGRTVEIFNSFELLY--DPKTQS---LDRTFLEKKQELYKKVFPHFYILGWYSTGS 178
           +G     TV++ NS+ + +  D K  S   LD  + E    ++K++    +I+GWYSTG 
Sbjct: 79  LGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGP 138

Query: 179 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI---PQLIFV 238
              E+D+ +H        +PV V+++  +   +  +P   Y +   V E      Q +FV
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQQVFV 198

Query: 239 RSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 298
                I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + +YL
Sbjct: 199 HVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRTYL 258

Query: 299 LAMQNGDVPMESSL---LRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCS 354
             +  G +P+   +   L+ V +LL  L V E +K    F +  ND ML+ YL+      
Sbjct: 259 DLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVK---AFAVKTNDMMLVIYLSSLIRSV 284

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W206	9.0e-140	78.09	COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=...	[more]
Q8W1P0	1.2e-136	74.69	COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=...	[more]
Q6ZKM2	3.8e-130	73.31	COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q54C92	7.5e-62	41.25	COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 ...	[more]
Q6NUC2	1.2e-56	38.82	COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1	[more]

BLAST of Cp4.1LG06g08040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936414.1	1.29e-231	100.00	COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 CO...	[more]
KAG7025007.1	2.14e-230	99.69	COP9 signalosome complex subunit 6a [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022976289.1	4.32e-230	99.69	COP9 signalosome complex subunit 6a-like [Cucurbita maxima] >XP_022976291.1 COP9...	[more]
XP_038897789.1	4.22e-221	95.40	COP9 signalosome complex subunit 6a-like [Benincasa hispida]	[more]
XP_008447803.1	3.46e-220	94.79	PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PR...	[more]

BLAST of Cp4.1LG06g08040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDK7	6.26e-232	100.00	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041...	[more]
A0A6J1IN37	2.09e-230	99.69	COP9 signalosome complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111476730 P...	[more]
A0A1S3BI92	1.68e-220	94.79	COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 ...	[more]
A0A6J1CEF0	5.35e-217	94.17	COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC11101046...	[more]
A0A6J1FKS7	1.03e-214	92.94	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157...	[more]

BLAST of Cp4.1LG06g08040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56280.1	6.4e-141	78.09	COP9 signalosome subunit 6A	[more]
AT4G26430.1	8.6e-138	74.69	COP9 signalosome subunit 6B	[more]
AT5G05780.1	2.1e-19	26.38	RP non-ATPase subunit 8A	[more]
AT5G05780.2	2.8e-19	25.99	RP non-ATPase subunit 8A	[more]
AT3G11270.1	1.8e-18	26.71	Mov34/MPN/PAD-1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	SMART	SM00232	pad1_6	coord: 56..219 e-value: 0.0015 score: 26.5
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 53..192 e-value: 3.5E-25 score: 88.3
IPR024969	Rpn11/EIF3F, C-terminal	PFAM	PF13012	MitMem_reg	coord: 240..354 e-value: 1.7E-23 score: 83.1
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 43..254 e-value: 6.0E-61 score: 206.9
None	No IPR available	PANTHER	PTHR10540:SF24	COP9 SIGNALOSOME COMPLEX SUBUNIT 6A	coord: 49..373
None	No IPR available	PANTHER	PTHR10540	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	coord: 49..373
IPR037518	MPN domain	PROSITE	PS50249	MPN	coord: 92..220 score: 18.75602
IPR033859	COP9 signalosome subunit 6	CDD	cd08063	MPN_CSN6	coord: 55..369 e-value: 2.41382E-135 score: 385.838

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08040.1	Cp4.1LG06g08040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
biological_process	GO:1990641	response to iron ion starvation
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0070122	isopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0005515	protein binding