Cp4.1LG06g07060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g07060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNAC domain protein
LocationCp4.1LG06: 4411373 .. 4411681 (+)
RNA-Seq ExpressionCp4.1LG06g07060
SyntenyCp4.1LG06g07060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACAATTTTCCAGTCTCAGCCCCAGCCTGCTCGGAGGCCCTCCCTCGCCGCCGCCGCCGCTGCCGCCGGCAGAGAACCCAGCCGGAGTATTAGATCCACTTGCAGGAGCTTTAGTTTTAGTGGGATGGTTAGGAGTGGCCGGAATGTGATGACGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCAGCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

mRNA sequence

ATGCCTACAATTTTCCAGTCTCAGCCCCAGCCTGCTCGGAGGCCCTCCCTCGCCGCCGCCGCCGCTGCCGCCGGCAGAGAACCCAGCCGGAGTATTAGATCCACTTGCAGGAGCTTTAGTTTTAGTGGGATGGTTAGGAGTGGCCGGAATGTGATGACGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCAGCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

Coding sequence (CDS)

ATGCCTACAATTTTCCAGTCTCAGCCCCAGCCTGCTCGGAGGCCCTCCCTCGCCGCCGCCGCCGCTGCCGCCGGCAGAGAACCCAGCCGGAGTATTAGATCCACTTGCAGGAGCTTTAGTTTTAGTGGGATGGTTAGGAGTGGCCGGAATGTGATGACGGCTGGTGGAGATAAGTTCCGGCGGAATCAAGGGAGGAGAGAGGTTTTGAGAAGGGCGTTGATGCCTCCCAGCCGGAAACCCACTCTCCGGTGGCTGAATTTCCGTCCAACTCCTAGTCGGCTTTCCAATATGTCTATGGCGGAAGCTTAA

Protein sequence

MPTIFQSQPQPARRPSLAAAAAAAGREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA
Homology
[Close]
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (456), Expect = 1.30e-56
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFR 60
           MPTIFQSQPQP RRPSLAAAA   GREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFR
Sbjct: 1   MPTIFQSQPQPDRRPSLAAAA---GREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFR 60

Query: 61  RNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA 102
           RNQGRREVLRRALMPP+RKPTLRWLNFRPTPSRLSNMSMAEA
Sbjct: 61  RNQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 99

[Close]
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 139 bits (350), Expect = 1.83e-40
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDK 60
           MPTIFQSQP P R PS+A      GREP  +R++RSTCRSFSF GMVR GRN+M   GD+
Sbjct: 1   MPTIFQSQPPPRRTPSVA------GREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDR 60

Query: 61  FRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA 102
            RRNQG REVLRRALMPPSR+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61  CRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 9.62e-40
Identity = 76/103 (73.79%), Postives = 84/103 (81.55%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDK 60
           MPTIFQSQP P R PS+A      GREP  +R++RSTCRSFSF GMVR GRN+M   GD+
Sbjct: 1   MPTIFQSQPPPRRTPSVA------GREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDR 60

Query: 61  FRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAE 101
            RRNQG REVLRRALMPPSR+PTLRW+NFRPTPSRLS MSMAE
Sbjct: 61  CRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97

[Close]
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 1.75e-38
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDK 60
           MPTIFQSQP P R PS+A      GRE   +R++RSTCRS SF GMVR GRN+M   GD+
Sbjct: 1   MPTIFQSQPPPRRSPSVA------GREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDR 60

Query: 61  FRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA 102
            RRNQG REVLRRALMPPSR+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61  CRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 1.90e-35
Identity = 74/100 (74.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFR 60
           MPTIFQSQ QPA RPS A A    GR  SRS+RS CRS SF G+ R GRNV TA GDK R
Sbjct: 1   MPTIFQSQQQPASRPSHAGAVREGGR--SRSLRSNCRSLSFGGVGRGGRNV-TAAGDKLR 60

Query: 61  RNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMA 100
           R QGRRE+LRRAL PP+R+PTLRWLNFR TPSRLSNMSMA
Sbjct: 61  RLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 8.87e-41
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDK 60
           MPTIFQSQP P R PS+A      GREP  +R++RSTCRSFSF GMVR GRN+M   GD+
Sbjct: 1   MPTIFQSQPPPRRTPSVA------GREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDR 60

Query: 61  FRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA 102
            RRNQG REVLRRALMPPSR+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61  CRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 8.49e-39
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0 

Query: 1   MPTIFQSQPQPARRPSLAAAAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDK 60
           MPTIFQSQP P R PS+A      GRE   +R++RSTCRS SF GMVR GRN+M   GD+
Sbjct: 1   MPTIFQSQPPPRRSPSVA------GREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDR 60

Query: 61  FRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPSRLSNMSMAEA 102
            RRNQG REVLRRALMPPSR+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61  CRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.00e-15
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 33  RSTCRSFSFSGMVRSGRNVMTAGGDKFRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPS 92
           RSTC   +  G VR  ++      DK RRNQ   E+LRRAL PP+R+ TLRW NF+PTPS
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPS 100

Query: 93  RLSNMSMA 100
           RLSNMSMA
Sbjct: 101 RLSNMSMA 108

[Close]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.00e-15
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 33  RSTCRSFSFSGMVRSGRNVMTAGGDKFRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPS 92
           RSTC   +  G VR  ++      DK RRNQ   E+LRRAL PP+R+ TLRW NF+PTPS
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPS 100

Query: 93  RLSNMSMA 100
           RLSNMSMA
Sbjct: 101 RLSNMSMA 108

[Close]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.01e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 33  RSTCRSFSFSGMVRSGRNVMTAGGDKFRRNQGRREVLRRALMPPSRKPTLRWLNFRPTPS 92
           RSTC   +  G VR  ++      D+ RR+Q  RE+LRRAL PP+R+ TLRW NF+PTPS
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYLVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPS 100

Query: 93  RLSNMSMA 100
           RLSNMSMA
Sbjct: 101 RLSNMSMA 108

[Close]
BLAST of Cp4.1LG06g07060 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 0 

Query: 32  IRSTCRSFSFSGMVRSGRNVMTAGGDK---FRRNQGRREVLRRALMPPSRKPTLRWLNFR 91
           +R  C      G  +  R+      D+    + + G REVLRRAL PP R+  LRWLNFR
Sbjct: 35  VRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVLRRALTPPIRRMNLRWLNFR 94

Query: 92  PTPSRLSNMS 99
           PTPSRL  MS
Sbjct: 95  PTPSRLCKMS 104

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g07060 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g07060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024857.11.30e-5695.10hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_011652880.11.83e-4073.08uncharacterized protein LOC105435142 [Cucumis sativus][more]
KGN60027.29.62e-4073.79hypothetical protein Csa_001878 [Cucumis sativus][more]
KAA0036871.11.75e-3871.15uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9... [more]
KAG6607862.11.90e-3574.00hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG06g07060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD238.87e-4173.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1[more]
A0A5A7T5L78.49e-3971.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9N1L21.00e-1558.82Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ... [more]
A0A4U5P5901.00e-1558.82Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1[more]
A0A6N2MHB82.01e-1557.35Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=... [more]
BLAST of Cp4.1LG06g07060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15518.13.0e-0845.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g07060.1Cp4.1LG06g07060.1mRNA