Cp4.1LG06g06950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RMA3-like
Location	Cp4.1LG06: 4327532 .. 4328302 (+)
RNA-Seq Expression	Cp4.1LG06g06950
Synteny	Cp4.1LG06g06950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAAACCATTCCGTGCATGAGTCTGGACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACCGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATTCGCTCGCCCTCACACCCACACCCGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCTTATAGCGACGTTGCTTCATATGCACCTTCTTATCTCGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATCGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGGAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTATTGTTTTGA

mRNA sequence

ATGGAACAAAACCATTCCGTGCATGAGTCTGGACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACCGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATTCGCTCGCCCTCACACCCACACCCGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCTTATAGCGACGTTGCTTCATATGCACCTTCTTATCTCGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATCGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGGAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTATTGTTTTGA

Coding sequence (CDS)

ATGGAACAAAACCATTCCGTGCATGAGTCTGGACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACCGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATTCGCTCGCCCTCACACCCACACCCGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCTTATAGCGACGTTGCTTCATATGCACCTTCTTATCTCGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATCGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGGAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTATTGTTTTGA

Protein sequence

MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF

Homology

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-46
Identity = 120/258 (46.51%), Postives = 153/258 (59.30%), Query Frame = 0


Query: 8   HESGHDVSLKQNWRSV----SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHV 67
           H++G     K N  +       + +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHV
Sbjct: 15  HDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV 74

Query: 68  QISSDEPENTQ-NCPVCKASITPSSLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPS 127
           Q+SS   +  Q NCPVCK++IT +SLVPLYGRG S+  S     K+  L   +PRRP PS
Sbjct: 75  QLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPS 134

Query: 128 MNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYH-QQYFPQAYSDVASYAPSYLG 187
               P   +AS+L+PS Q            H    P +H  QY P+ ++   S   + L 
Sbjct: 135 ALRNP-ITSASSLNPSLQ------------HQTLSPSFHNHQYSPRGFTTTES---TDLA 194

Query: 188 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 247
           NAV+ S L P IGMFG+ V+TRIFG          T+ N+I     S   ++ MQ +KSL
Sbjct: 195 NAVMMSFLYPVIGMFGDLVYTRIFG----------TFTNTIAQPYQS---QRMMQREKSL 243

Query: 248 NRVSIFLFCCFIICLLLF 257
           NRVSIF  CC I+CLLLF
Sbjct: 255 NRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-39
Identity = 104/261 (39.85%), Postives = 141/261 (54.02%), Query Frame = 0


Query: 12  HDVSLKQNWRS----VSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS 71
           HD  L + W+S    V E+ +G F+CNICLD   +PV+TLCGHLYCWPCIY W++ Q  S
Sbjct: 17  HDTPLGK-WKSMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVS 76

Query: 72  DEPENTQ--NCPVCKASITPSSLVPLYGR-GTSNSDSESKKSHLGMAVPRRPPPSMNAPP 131
            E  + Q   CPVCKA ++  +L+PLYGR G S   SE K  +LG+ +P+RPP       
Sbjct: 77  SENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGH 136

Query: 132 HSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITS 191
                +  +PSQ L              Q   Y QQ          +  P+Y G+ + + 
Sbjct: 137 FLLPTTDSNPSQLL--------------QRRGYQQQ--------SQTRQPAYQGSYMSSP 196

Query: 192 LLNP--------TIGMFGETVFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLD 251
           +L+P           M GE  + RIFG+    +  YP +YN +I  + S RMRRQ  Q D
Sbjct: 197 MLSPGGATANMLQHSMIGEVAYARIFGNSSTTMYTYPNSYNLAI--SSSPRMRRQLSQAD 252

Query: 252 KSLNRVSIFLFCCFIICLLLF 257
           +SL R+  FLFCCF+ CL+LF
Sbjct: 257 RSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-36
Identity = 101/239 (42.26%), Postives = 141/239 (59.00%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP---SMNAPPHSNAASALHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP      +  P    A++ L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVF 203
           H N   SP            + Y+P +   ++S + SY      +++L+P + M GE V 
Sbjct: 161 HFN---SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEMVA 220

Query: 204 TRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 257
           TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLLF
Sbjct: 221 TRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 77/238 (32.35%), Postives = 105/238 (44.12%), Query Frame = 0


Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAASALHPSQQL 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP                      
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRP---------------------- 133

Query: 146 HPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVF 205
                           P+Y  +   Q   +  S    Y        + +P +G+  E V+
Sbjct: 134 --------------TGPVYDLRGVGQRLGEGESQRYMY-------RMPDPVMGVVCEMVY 193

Query: 206 TRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 257
            R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 RRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 22  SVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKA 81
           S ++D +  FECNICLD+A D VV+LCGHL+CWPC+  WL      D   N Q CPVCK+
Sbjct: 15  SSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWL------DTRPNNQVCPVCKS 74

Query: 82  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAA 130
           +I  + +VP+YGRG  +SD   K       VP RP    + PP  + A
Sbjct: 75  AIDGNKVVPIYGRGGDSSDPRKK-------VPPRPKGQRSEPPPQSFA 109

[Close]

BLAST of Cp4.1LG06g06950 vs. NCBI nr
Match: XP_023535125.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528 bits (1360), Expect = 2.30e-189
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNA 180
           NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNA
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNA 180

Query: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240
           VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR
Sbjct: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240

Query: 241 VSIFLFCCFIICLLLF 256
           VSIFLFCCFIICLLLF
Sbjct: 241 VSIFLFCCFIICLLLF 256

[Close]

BLAST of Cp4.1LG06g06950 vs. NCBI nr
Match: XP_022976563.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima])

HSP 1 Score: 519 bits (1336), Expect = 1.05e-185
Identity = 252/256 (98.44%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNA 180
           N PPHSNAASALH SQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAY+DVASYAPSYLGNA
Sbjct: 121 NTPPHSNAASALHHSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYTDVASYAPSYLGNA 180

Query: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240
           VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR
Sbjct: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240

Query: 241 VSIFLFCCFIICLLLF 256
           VSIFLFCCFIICLLLF
Sbjct: 241 VSIFLFCCFIICLLLF 256

[Close]

BLAST of Cp4.1LG06g06950 vs. NCBI nr
Match: KAG7024839.1 (E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513 bits (1320), Expect = 3.11e-183
Identity = 252/258 (97.67%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQH--PIYHQQYFPQAYSDVASYAPSYLG 180
           NA PHSNAASALHPSQQLHPNYIRS SHPHPHQH  PIYHQQYFPQAYSD+ASYAPSYLG
Sbjct: 121 NALPHSNAASALHPSQQLHPNYIRSSSHPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 256
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 258

[Close]

BLAST of Cp4.1LG06g06950 vs. NCBI nr
Match: XP_022937391.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata])

HSP 1 Score: 512 bits (1318), Expect = 7.83e-183
Identity = 252/264 (95.45%), Postives = 253/264 (95.83%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRG SNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPH--------QHPIYHQQYFPQAYSDVASY 180
           NAPPHSNAASALHPSQQLHPNYIRS SHPHPH        QHPIYHQQYFPQAYSD+ASY
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRSSSHPHPHPHPHQHQHQHPIYHQQYFPQAYSDIASY 180

Query: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240
           APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM
Sbjct: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240

Query: 241 QLDKSLNRVSIFLFCCFIICLLLF 256
           QLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QLDKSLNRVSIFLFCCFIICLLLF 264

[Close]

BLAST of Cp4.1LG06g06950 vs. NCBI nr
Match: KAG6591967.1 (E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 511 bits (1315), Expect = 1.80e-182
Identity = 251/258 (97.29%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRS--PSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLG 180
           NA PHSNAASALHPSQQLHPNYIRS  P HPH HQHPIYHQQYFPQAYSD+ASYAPSYLG
Sbjct: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 256
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 258

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL
Match: A0A6J1IMJ1 (E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita maxima OX=3661 GN=LOC111476921 PE=4 SV=1)

HSP 1 Score: 519 bits (1336), Expect = 5.09e-186
Identity = 252/256 (98.44%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNA 180
           N PPHSNAASALH SQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAY+DVASYAPSYLGNA
Sbjct: 121 NTPPHSNAASALHHSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYTDVASYAPSYLGNA 180

Query: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240
           VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR
Sbjct: 181 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 240

Query: 241 VSIFLFCCFIICLLLF 256
           VSIFLFCCFIICLLLF
Sbjct: 241 VSIFLFCCFIICLLLF 256

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL
Match: A0A6J1FA79 (E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita moschata OX=3662 GN=LOC111443695 PE=4 SV=1)

HSP 1 Score: 512 bits (1318), Expect = 3.79e-183
Identity = 252/264 (95.45%), Postives = 253/264 (95.83%), Query Frame = 0


Query: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRG SNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NAPPHSNAASALHPSQQLHPNYIRSPSHPHPH--------QHPIYHQQYFPQAYSDVASY 180
           NAPPHSNAASALHPSQQLHPNYIRS SHPHPH        QHPIYHQQYFPQAYSD+ASY
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRSSSHPHPHPHPHQHQHQHPIYHQQYFPQAYSDIASY 180

Query: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240
           APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM
Sbjct: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240

Query: 241 QLDKSLNRVSIFLFCCFIICLLLF 256
           QLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QLDKSLNRVSIFLFCCFIICLLLF 264

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL
Match: A0A5A7VD79 (E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003900 PE=4 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 2.19e-156
Identity = 225/266 (84.59%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEQNHSVHE----SGHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    S  DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTESTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVA 180
           AVPRRPPPSMN PP SN++SA +PSQ+LH NYIRSPS      HPIYHQQYFPQAY + A
Sbjct: 121 AVPRRPPPSMNTPPPSNSSSASYPSQELHSNYIRSPS------HPIYHQQYFPQAYGNFA 180

Query: 181 SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQ 240
           SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP YNNSI+GN S+RMRRQ
Sbjct: 181 SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMRRQ 240

Query: 241 EMQLDKSLNRVSIFLFCCFIICLLLF 256
           EMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 EMQLDKSLNRVSIFLFCCFIICLLLF 260

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL
Match: A0A1S3BTX0 (E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 2.19e-156
Identity = 225/266 (84.59%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEQNHSVHE----SGHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    S  DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTESTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVA 180
           AVPRRPPPSMN PP SN++SA +PSQ+LH NYIRSPS      HPIYHQQYFPQAY + A
Sbjct: 121 AVPRRPPPSMNTPPPSNSSSASYPSQELHSNYIRSPS------HPIYHQQYFPQAYGNFA 180

Query: 181 SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQ 240
           SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP YNNSI+GN S+RMRRQ
Sbjct: 181 SYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMRRQ 240

Query: 241 EMQLDKSLNRVSIFLFCCFIICLLLF 256
           EMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 EMQLDKSLNRVSIFLFCCFIICLLLF 260

[Close]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL
Match: A0A0A0KZN0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 PE=4 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 1.78e-153
Identity = 223/267 (83.52%), Postives = 236/267 (88.39%), Query Frame = 0


Query: 1   MEQNHSVHE----SGHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    S  DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQA-YSDV 180
           AVPRRPPPSMN P HSN++S L+PSQ+LH NYIRSPS      HPIYHQQYFPQA Y + 
Sbjct: 121 AVPRRPPPSMNTPSHSNSSSTLYPSQELHSNYIRSPS------HPIYHQQYFPQATYGNF 180

Query: 181 ASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRR 240
           ASY+PSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPY  YNNSI+GN S+RMRR
Sbjct: 181 ASYSPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYSPYNNSISGNASTRMRR 240

Query: 241 QEMQLDKSLNRVSIFLFCCFIICLLLF 256
           QEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QEMQLDKSLNRVSIFLFCCFIICLLLF 261

[Close]

BLAST of Cp4.1LG06g06950 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 188.3 bits (477), Expect = 7.4e-48
Identity = 120/258 (46.51%), Postives = 153/258 (59.30%), Query Frame = 0


Query: 8   HESGHDVSLKQNWRSV----SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHV 67
           H++G     K N  +       + +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHV
Sbjct: 15  HDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV 74

Query: 68  QISSDEPENTQ-NCPVCKASITPSSLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPS 127
           Q+SS   +  Q NCPVCK++IT +SLVPLYGRG S+  S     K+  L   +PRRP PS
Sbjct: 75  QLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPS 134

Query: 128 MNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYH-QQYFPQAYSDVASYAPSYLG 187
               P   +AS+L+PS Q            H    P +H  QY P+ ++   S   + L 
Sbjct: 135 ALRNP-ITSASSLNPSLQ------------HQTLSPSFHNHQYSPRGFTTTES---TDLA 194

Query: 188 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 247
           NAV+ S L P IGMFG+ V+TRIFG          T+ N+I     S   ++ MQ +KSL
Sbjct: 195 NAVMMSFLYPVIGMFGDLVYTRIFG----------TFTNTIAQPYQS---QRMMQREKSL 243

Query: 248 NRVSIFLFCCFIICLLLF 257
           NRVSIF  CC I+CLLLF
Sbjct: 255 NRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Cp4.1LG06g06950 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-38
Identity = 101/239 (42.26%), Postives = 141/239 (59.00%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP---SMNAPPHSNAASALHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP      +  P    A++ L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVF 203
           H N   SP            + Y+P +   ++S + SY      +++L+P + M GE V 
Sbjct: 161 HFN---SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEMVA 220

Query: 204 TRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 257
           TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLLF
Sbjct: 221 TRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Cp4.1LG06g06950 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-38
Identity = 101/239 (42.26%), Postives = 141/239 (59.00%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP---SMNAPPHSNAASALHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP      +  P    A++ L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVF 203
           H N   SP            + Y+P +   ++S + SY      +++L+P + M GE V 
Sbjct: 161 HFN---SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEMVA 220

Query: 204 TRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 257
           TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLLF
Sbjct: 221 TRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Cp4.1LG06g06950 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26
Identity = 77/238 (32.35%), Postives = 105/238 (44.12%), Query Frame = 0


Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAASALHPSQQL 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP                      
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRP---------------------- 133

Query: 146 HPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVF 205
                           P+Y  +   Q   +  S    Y        + +P +G+  E V+
Sbjct: 134 --------------TGPVYDLRGVGQRLGEGESQRYMY-------RMPDPVMGVVCEMVY 193

Query: 206 TRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 257
            R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 RRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Cp4.1LG06g06950 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.2e-25
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 13  DVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPEN 72
           DV    +    + + +  FECNICLD A DP+VTLCGHL+CWPC+Y WLH+   S     
Sbjct: 3   DVPSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS----- 62

Query: 73  TQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPP---PSMNAPPHSNAA 132
            ++CPVCKA I    LVPLYGRG S++D  S KS  G+ VP RP    P    PP  N  
Sbjct: 63  -KDCPVCKAVIEEDRLVPLYGRGKSSADPRS-KSIPGLEVPNRPSGQRPETAQPPDPNHG 119

Query: 133 SALH 134
            A H
Sbjct: 123 FAHH 119

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUK7	1.0e-46	46.51	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
Q6R567	2.1e-39	39.85	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	1.3e-36	42.26	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	3.9e-25	32.35	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q09463	1.4e-19	46.30	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]

BLAST of Cp4.1LG06g06950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535125.1	2.30e-189	100.00	E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976563.1	1.05e-185	98.44	E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima]	[more]
KAG7024839.1	3.11e-183	97.67	E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022937391.1	7.83e-183	95.45	E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata]	[more]
KAG6591967.1	1.80e-182	97.29	E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Cp4.1LG06g06950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IMJ1	5.09e-186	98.44	E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita maxima OX=3661 GN=LOC11147692...	[more]
A0A6J1FA79	3.79e-183	95.45	E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita moschata OX=3662 GN=LOC111443...	[more]
A0A5A7VD79	2.19e-156	84.59	E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BTX0	2.19e-156	84.59	E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV...	[more]
A0A0A0KZN0	1.78e-153	83.52	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 P...	[more]

BLAST of Cp4.1LG06g06950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	7.4e-48	46.51	RING membrane-anchor 3	[more]
AT4G03510.1	9.1e-38	42.26	RING membrane-anchor 1	[more]
AT4G03510.2	9.1e-38	42.26	RING membrane-anchor 1	[more]
AT4G28270.1	2.7e-26	32.35	RING membrane-anchor 2	[more]
AT1G19310.1	5.2e-25	48.39	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 33..79 e-value: 1.2E-9 score: 48.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 33..80 score: 12.489278
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 13..107 e-value: 1.7E-16 score: 61.8
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 33..77 e-value: 3.6E-8 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..133
None	No IPR available	PANTHER	PTHR12313:SF69	E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE	coord: 4..256
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 31..81 e-value: 3.40219E-24 score: 89.6707
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 25..92
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 4..256
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 48..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06950.1	Cp4.1LG06g06950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity