Cp4.1LG06g06270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transmembrane protein
Location	Cp4.1LG06: 3971623 .. 3974278 (+)
RNA-Seq Expression	Cp4.1LG06g06270
Synteny	Cp4.1LG06g06270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTTACCGTCGCAATAATACTAATTTCAACGTCCCCAGATCGAAAGTCTGTAAAGTTCCTCGCCGGAGAAGCGTCATCCCCGCCGTCAACCAGTGTTCAGGTGTGTGAAAATCTCCTTTTCATCTCTTCTCCTTCTAGCTTCACTTCCTCTCTGTCTGCGATCAATTTAATTTTGTTTTCTTCAATCATCTATCTGCCTTCGATTTTCAGCAAATAGGAGTGATTATCTCGCACTGTGTTCTTAATCATCGTTACTCATAAAATTTGATCGTTGTGGCTTCGATGTCAATTAAGGTGATGCTAGTTGAGGAATGAGTGCAAATCGAAATGTAGGTTTGTGGTTTGGGCTTTTAGAGCCTTCGCTATTGATAATTTGTTGAGGACGGAAGTTTGACCTAGAACTACTAATTCTTCGTCGATTTTTATCCATTTTGTATGAAAAGATGGAACTGGTGTTTTACTGTATGTGTACCATTGATGAATTCCCGACTGCAAACTGTTCTGGATATCCATTTTTTCTTGAAAACCTATGAATTATTTTGAGGTTAGAATAGTGTAAGATCCCAAACTACGGCCAGTAGATATTGTCCCGGTCAGCCTCATGGTTTTAGTAGTACACACTTTTACTCTCTTATAAGTAATGTCTCTCCAACCGAGGTGGGATTTCACAATCCACCCTCTTAGGGGCCAGCGTTGTTGCTGGCACACTGCCCATCGGTAGCAAAACCCTTATAAGGAATGTCTCTCCAACTGATGTGGGAATTCACAATCCACTCTCTTAGGGGCTAGCGTTGTCGCTGGCACACTGCCCACCGCTAGCAGAACCCTTATAAGGAATGCCTCTTCAGCCGATGTGGGATGTCACAATTCACCTCCCTTGGGGCCAGCGTCCTCATTGTTACACTGCCCACTGCTAGTAGAACCCTTATAAGGAATGTCTCTCCAACCGATGTGGAATCTCACAATCCACCTTTTGGGGGTCAGCGTCCTCGCTGACACACTACCCACCGCTAGCAGAACCCTTATAAAAATGTCTCTCCAATCGATATGGGATCTCACAATCCACCCTTCTTGGGGGCCTAGTGTCCTTGCTAACACACCGTCCACCGCTAGCAAAGCCCTTACGAGGAATGCCTCTCCAACCGATGTAGGATCTCACACATAGCCCACCGCTAGTAGATATTGTCCGCTTTGGCCCATTACATATCGTCATCAGCTTCATAGTTTTAAAATGCGTCTACTAAAGAGAGGTTTCCACATCCTTATTAGGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTTAACTATTTGCTGTTTTTGTGTATATAAATTACAGGGTCAAGTTGTCCAAATTCCATTACCAATCAATATGGATTATTTTGGACAACCATATATGTAAATTCCAGTAGAATTTCCTGGGATGATGATCCTTTCAAGCGTGCTAATTATCAGATTTTTTGGTGCTTGACTTTTGATATCCATATGGTTGAGAGCTAATTTTGTTGCTGTTTTTCATTAGTAACTGAGGAAGAGCTATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCCGTTTCAAAGTAAGCTCTCTCCTCCTACCTTTTCTCTTACACTGCTTGAAAATGAAGAATTTCTCTAGACTCTTATCTTATTAGCATCATCTTGTTGTGCAAATAAATCCCAAATTGCTTATCATAAAATTTGGGCAAATTTTTCCTAAACCCTGGGAGAATCCCTTGGAGGCAGAAATTTTGTTCGAAATGTTGTGTCGAATGTCTTTTAACTTTTTGGTAGCCATGGTTTTAAATTTTAGTGAGTATGACCATTCGAGCACCGTGTGAGATTCCACATCGGTGGGAGAGGGGAACGAAACATATTCTATAAGGGTGTGGAAACATCTCCCTAGCAGACGCATTTTAAAACCGTGAGGTTGACAACGATACGTAACGGACCAAAGTGGACAATATCTGCTAGCGGTAAACTTGGACTATTATACACCATGTTTCGTTTTTATTTATTTATTTATTTATTTTTTGTTCTTTCAACTGGTTTTCTCTTGAGATTTGATTGATTATTGTGCATTCCACAGTGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACGAATCTGAGTCCCTTTCTTGATATCATTGCTTACACGGTTGTATCAGATGAATATCTTTGTGGCATGGCCCTTGGCTGATTTGTTACAGCCTTCTTTCTTCAAACCCACAGTGACACTGAATGAGTTATGGTTTCACGAGAACTGTCTTGACTTTGTTGTTGATCGAATTGATCATAACATATATTGATCATATATGATATGAATCAAGACATCTCAATAATACAATATGAACTTGAAGGAAGTTGTGAAGAATGTTATTCAAATTAACTCAAGATCAAGTCAAGTTCTATTAAAGTTAAATTCAAGTTGTAATCGAATCAAGTCTCATTTTTGCAACAAA

mRNA sequence

TAGTTTACCGTCGCAATAATACTAATTTCAACGTCCCCAGATCGAAAGTCTGTAAAGTTCCTCGCCGGAGAAGCGTCATCCCCGCCGTCAACCAGTGTTCAGTAACTGAGGAAGAGCTATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCCGTTTCAAATGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACGAATCTGAGTCCCTTTCTTGATATCATTGCTTACACGGTTGTATCAGATGAATATCTTTGTGGCATGGCCCTTGGCTGATTTGTTACAGCCTTCTTTCTTCAAACCCACAGTGACACTGAATGAGTTATGGTTTCACGAGAACTGTCTTGACTTTGTTGTTGATCGAATTGATCATAACATATATTGATCATATATGATATGAATCAAGACATCTCAATAATACAATATGAACTTGAAGGAAGTTGTGAAGAATGTTATTCAAATTAACTCAAGATCAAGTCAAGTTCTATTAAAGTTAAATTCAAGTTGTAATCGAATCAAGTCTCATTTTTGCAACAAA

Coding sequence (CDS)

ATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCCGTTTCAAATGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACGAATCTGAGTCCCTTTCTTGA

Protein sequence

MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEAQNSAAEASVNESESLS

Homology

[Close]

BLAST of Cp4.1LG06g06270 vs. NCBI nr
Match: XP_022937150.1 (uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 uncharacterized protein LOC111797732 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178 bits (451), Expect = 4.63e-56
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94
          ISACEREHAERQMKLLEAQNSAAEASVNESESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Cp4.1LG06g06270 vs. NCBI nr
Match: XP_022976612.1 (uncharacterized protein LOC111476955 [Cucurbita maxima])

HSP 1 Score: 177 bits (450), Expect = 6.57e-56
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94
          +SACEREHAERQMKLLEAQNSAAEASVNESESLS
Sbjct: 61 VSACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Cp4.1LG06g06270 vs. NCBI nr
Match: KAG6591905.1 (hypothetical protein SDJN03_14251, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024778.1 hypothetical protein SDJN02_13596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177 bits (448), Expect = 1.33e-55
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94
          ISACEREHAERQMKLLEAQNSAAEASVN+SESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSESLS 94

[Close]

BLAST of Cp4.1LG06g06270 vs. NCBI nr
Match: XP_022138625.1 (uncharacterized protein LOC111009737 [Momordica charantia])

HSP 1 Score: 166 bits (420), Expect = 2.48e-51
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS E VKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSHENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESES 92
          ISACEREHAERQMKLLEAQNSAA+ASV +SES
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASVADSES 92

[Close]

BLAST of Cp4.1LG06g06270 vs. NCBI nr
Match: XP_038899123.1 (uncharacterized protein LOC120086511 [Benincasa hispida] >XP_038899124.1 uncharacterized protein LOC120086511 [Benincasa hispida] >XP_038899125.1 uncharacterized protein LOC120086511 [Benincasa hispida])

HSP 1 Score: 166 bits (419), Expect = 3.64e-51
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQE VKH+EECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLE-AQNSAAEASVNESES 92
          ISACEREHAERQMKLLE AQNSAAEAS+N+SES
Sbjct: 61 ISACEREHAERQMKLLEEAQNSAAEASLNDSES 93

[Close]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL
Match: A0A6J1FFR1 (uncharacterized protein LOC111443534 OS=Cucurbita moschata OX=3662 GN=LOC111443534 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 2.24e-56
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94
          ISACEREHAERQMKLLEAQNSAAEASVNESESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL
Match: A0A6J1IG79 (uncharacterized protein LOC111476955 OS=Cucurbita maxima OX=3661 GN=LOC111476955 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 3.18e-56
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94
          +SACEREHAERQMKLLEAQNSAAEASVNESESLS
Sbjct: 61 VSACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL
Match: A0A6J1C9Z5 (uncharacterized protein LOC111009737 OS=Momordica charantia OX=3673 GN=LOC111009737 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.20e-51
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS E VKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSHENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESES 92
          ISACEREHAERQMKLLEAQNSAA+ASV +SES
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASVADSES 92

[Close]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL
Match: A0A6A1UYF7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G010698 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 2.43e-51
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG QE VKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGDQETVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNE 89
          ISACEREHAERQMKLLEAQNSAA+AS+NE
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASLNE 89

[Close]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL
Match: A0A0B2PI48 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_038894 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 1.16e-49
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG +E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNESE 91
          ISACEREHAERQMKLLEAQN+AAE S+ E+E
Sbjct: 61 ISACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Cp4.1LG06g06270 vs. TAIR 10
Match: AT1G21930.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-34
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQE VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVN----ESESLS 95
          +S CEREHAE QMKLL+   +A   + N    ES S+S
Sbjct: 61 VSQCEREHAEHQMKLLQDSQNATTTTTNTETEESSSMS 98

[Close]

BLAST of Cp4.1LG06g06270 vs. TAIR 10
Match: AT3G42150.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-32
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQ+ VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLL-EAQNSAAEASVNESES 93
          +S CEREHAE Q KLL ++QN+    +   +E+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

[Close]

BLAST of Cp4.1LG06g06270 vs. TAIR 10
Match: AT3G42150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 42 Blast hits to 42 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-32
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQ+ VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLL-EAQNSAAEASVNESES 93
          +S CEREHAE Q KLL ++QN+    +   +E+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

[Close]

BLAST of Cp4.1LG06g06270 vs. TAIR 10
Match: AT3G42150.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-32
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQ+ VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLL-EAQNSAAEASVNESES 93
          +S CEREHAE Q KLL ++QN+    +   +E+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06270 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g06270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937150.1	4.63e-56	100.00	uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 unchar...	[more]
XP_022976612.1	6.57e-56	98.94	uncharacterized protein LOC111476955 [Cucurbita maxima]	[more]
KAG6591905.1	1.33e-55	98.94	hypothetical protein SDJN03_14251, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022138625.1	2.48e-51	94.57	uncharacterized protein LOC111009737 [Momordica charantia]	[more]
XP_038899123.1	3.64e-51	94.62	uncharacterized protein LOC120086511 [Benincasa hispida] >XP_038899124.1 unchara...	[more]

BLAST of Cp4.1LG06g06270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFR1	2.24e-56	100.00	uncharacterized protein LOC111443534 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1IG79	3.18e-56	98.94	uncharacterized protein LOC111476955 OS=Cucurbita maxima OX=3661 GN=LOC111476955...	[more]
A0A6J1C9Z5	1.20e-51	94.57	uncharacterized protein LOC111009737 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6A1UYF7	2.43e-51	95.51	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G010698 PE=4 SV=1	[more]
A0A0B2PI48	1.16e-49	90.11	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_038894 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g06270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21930.1	6.5e-34	74.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G42150.2	3.6e-32	73.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42150.1	3.6e-32	73.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42150.3	3.6e-32	73.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..93
None	No IPR available	PANTHER	PTHR35691	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR35691:SF1	EXPRESSED PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06270.1	Cp4.1LG06g06270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane