Cp4.1LG06g06070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g06070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 3769363 .. 3770653 (-)
RNA-Seq ExpressionCp4.1LG06g06070
SyntenyCp4.1LG06g06070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGGTCCACAAGAACATTTTCCCATTTGAGCAATGCAAAATGGGGCAAATGTGCACTTTCAATGGTGCCCTTAAAAGGTACTAAGTTCCCCATAAAATGGATGCATAGAATTTCCCATGCGCACTTCCAATGGTGCCCATAAAGTACTTCCATATCTTCCATGAAATGATTATTATTGTGCATTTTTTTAGTTCCAATGGACATTGATGGAATAGGGTATAGAAGAGATTGAAAAAAAGGAGAACTTTTCCTCTATTGAAGGAGATTTCATTTAGTGTAAATTACTTTCTTTAACTTCTTTACTTTAGAATCATACATCTAATCTTATAATTTGACTGATATACCCAATACTTTCTTCCATTAAAGAATAGAATGAAGGGATTAAAAGGTAAAAAAAAGGTGGGGAAAGTAATAAATTTCAAATAGATGAAACTTTCCATGTGAATACTCTAATTTCCTTAAGGAAATAGGAAAAGTTACAGTCTTCGGATTGAAACGTGTGAATCTGTTGGATTCACCATTTACAGACTCTCCTTCATGGGGTCCTTACTTTACTACTTACTCAACAGTTAAAAAAAAAAGAGAGAAATTTAACCATTACAAAAGTTACTGAAGCTATAAGAGAGAAGTGCAGTAGGGATTGCATTTATGGGTGTTGTTTTGTGGTCGTTCTTGTTCAGCAGCGTAGTAATAATTTAATGACGAAGGTAAATTTTGAATTGAATTAGTAGATGGTTTGAAAAGGCTTAATTGACTTGGAATCTTGAATAACTCCAGCTACAGATCCAGATGCTGCTGCAATGGTGATTATGAGGCAAGCCAAGCTGAGAATTTGGAGGCTGACCCATCTTGTGCTCCATTTTGGGATCTTCATTTGTGCAATGTACATTTCAACAGGGAAGTAGACAGTGAGAGGCCAAAATCCCAAGGCTCCGAGAAGTCCGACGATGTCGTTGAAGAACGGGAGGAGCATCGAGATGATAGTGGTGATGATCACGAAGATTGTCCTCCAAACTAACCTGAAGAGGTTGAGTTTCAAGGAGCGAAAGCCTGGGATTGGGATACTGATGTCTTCGTTGATGAATTGACTATCTGGGAATCGGTTTGACGCGAATTTCTCGATGAAAGCAAAGAGCGGTTGGCAAAAAACTTGATACGCACCGACAAGATGGACAACAATGGCTACGTTCGCTATGTCGAGAAGCCAAAACGGGTTGTAGAAGCCGAAACCAGTGAGGAGATTGCCAGGAGCAAAGTCTCCAAAGGCTGCATAACCCATACACCCACACA

mRNA sequence

GATGGTCCACAAGAACATTTTCCCATTTGAGCAATGCAAAATGGGGCAAATGTGCACTTTCAATGGTGCCCTTAAAAGCTACAGATCCAGATGCTGCTGCAATGGTGATTATGAGGCAAGCCAAGCTGAGAATTTGGAGGCTGACCCATCTTGTGCTCCATTTTGGGATCTTCATTTGTGCAATGTACATTTCAACAGGGAAGTAGACAGTGAGAGGCCAAAATCCCAAGGCTCCGAGAAGTCCGACGATGTCGTTGAAGAACGGGAGGAGCATCGAGATGATAGTGGTGATGATCACGAAGATTGTCCTCCAAACTAACCTGAAGAGGTTGAGTTTCAAGGAGCGAAAGCCTGGGATTGGGATACTGATGTCTTCGTTGATGAATTGACTATCTGGGAATCGGTTTGACGCGAATTTCTCGATGAAAGCAAAGAGCGGTTGGCAAAAAACTTGATACGCACCGACAAGATGGACAACAATGGCTACGTTCGCTATGTCGAGAAGCCAAAACGGGTTGTAGAAGCCGAAACCAGTGAGGAGATTGCCAGGAGCAAAGTCTCCAAAGGCTGCATAACCCATACACCCACACA

Coding sequence (CDS)

ATGGTCCACAAGAACATTTTCCCATTTGAGCAATGCAAAATGGGGCAAATGTGCACTTTCAATGGTGCCCTTAAAAGCTACAGATCCAGATGCTGCTGCAATGGTGATTATGAGGCAAGCCAAGCTGAGAATTTGGAGGCTGACCCATCTTGTGCTCCATTTTGGGATCTTCATTTGTGCAATGTACATTTCAACAGGGAAGTAGACAGTGAGAGGCCAAAATCCCAAGGCTCCGAGAAGTCCGACGATGTCGTTGAAGAACGGGAGGAGCATCGAGATGATAGTGGTGATGATCACGAAGATTGTCCTCCAAACTAA

Protein sequence

MVHKNIFPFEQCKMGQMCTFNGALKSYRSRCCCNGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRDDSGDDHEDCPPN
Homology
BLAST of Cp4.1LG06g06070 vs. NCBI nr
Match: BAS75576.1 (Os01g0882900, partial [Oryza sativa Japonica Group])

HSP 1 Score: 62.4 bits (150), Expect = 1.14e-08
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 34 NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEH 91
          +GD EA+ AE+L+A P CAP W L L +VH + EVD ERP+S+ +E++D VVEE ++H
Sbjct: 21 DGDDEAADAEHLQAHPPCAPPWHLLLHHVHLHGEVDGERPESERAEEADHVVEEGQQH 78

BLAST of Cp4.1LG06g06070 vs. NCBI nr
Match: KAB8084618.1 (hypothetical protein EE612_007205, partial [Oryza sativa])

HSP 1 Score: 61.2 bits (147), Expect = 2.92e-08
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 34 NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEH 91
          +GD EA+ AE+L+A P CAP W L L +VH + EVD ERP+S+ ++++D VVEE ++H
Sbjct: 21 DGDDEAADAEHLQAHPPCAPPWHLLLHHVHLHGEVDGERPESERADEADHVVEEGQQH 78

BLAST of Cp4.1LG06g06070 vs. NCBI nr
Match: KAB8114528.1 (hypothetical protein EE612_053998, partial [Oryza sativa])

HSP 1 Score: 55.8 bits (133), Expect = 2.38e-06
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 34  NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRD 93
           +GD EA  AE+LEA+P  AP     L +VH + EVD ERP+  G+E+   V EEREEH  
Sbjct: 22  DGDDEAGGAEDLEAEPPRAPSPHAALRDVHLDGEVDGERPERDGAEEPHHVAEEREEHGH 81

Query: 94  DSGDDHE 100
           D G  HE
Sbjct: 82  DGGGAHE 88

BLAST of Cp4.1LG06g06070 vs. NCBI nr
Match: BAT78679.1 (hypothetical protein VIGAN_02139000 [Vigna angularis var. angularis])

HSP 1 Score: 52.4 bits (124), Expect = 3.32e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 35 GDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEH 91
          G  +AS+AE LEADP  AP W   L N+HF+ E+ S+ PKS+ S K   V+EE E+H
Sbjct: 33 GHQKASKAECLEADPFRAPLWYSLLSNIHFHWEIHSKGPKSKCSNKPSYVIEEWEQH 89

BLAST of Cp4.1LG06g06070 vs. NCBI nr
Match: BAT13040.1 (Os11g0195650, partial [Oryza sativa Japonica Group])

HSP 1 Score: 54.7 bits (130), Expect = 5.15e-06
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 34 NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRD 93
          +GD EA  AE+LEA+P  AP     L +VH + EVD ERP+  G+E+   V EEREEH  
Sbjct: 22 DGDDEAGGAEDLEAEPPRAPSPHAALRDVHLDGEVDGERPERDGAEEPHHVAEEREEHGH 81

Query: 94 DSG 96
          D G
Sbjct: 82 DGG 84

BLAST of Cp4.1LG06g06070 vs. ExPASy TrEMBL
Match: A0A0P0VB87 (Os01g0882900 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0882900 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.54e-09
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 34 NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEH 91
          +GD EA+ AE+L+A P CAP W L L +VH + EVD ERP+S+ +E++D VVEE ++H
Sbjct: 21 DGDDEAADAEHLQAHPPCAPPWHLLLHHVHLHGEVDGERPESERAEEADHVVEEGQQH 78

BLAST of Cp4.1LG06g06070 vs. ExPASy TrEMBL
Match: A0A0S3RDM5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G139000 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.61e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 35 GDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEH 91
          G  +AS+AE LEADP  AP W   L N+HF+ E+ S+ PKS+ S K   V+EE E+H
Sbjct: 33 GHQKASKAECLEADPFRAPLWYSLLSNIHFHWEIHSKGPKSKCSNKPSYVIEEWEQH 89

BLAST of Cp4.1LG06g06070 vs. ExPASy TrEMBL
Match: A0A0P0Y029 (Os11g0195650 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0195650 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.49e-06
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 34 NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRD 93
          +GD EA  AE+LEA+P  AP     L +VH + EVD ERP+  G+E+   V EEREEH  
Sbjct: 22 DGDDEAGGAEDLEAEPPRAPSPHAALRDVHLDGEVDGERPERDGAEEPHHVAEEREEHGH 81

Query: 94 DSG 96
          D G
Sbjct: 82 DGG 84

BLAST of Cp4.1LG06g06070 vs. ExPASy TrEMBL
Match: A0A0P0WML0 (Os05g0424100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0424100 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.24e-05
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 34  NGDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRD 93
           +GD EA +AE L+A P  AP     L +VH +REVD ERP+   +E+   VVEER++HR 
Sbjct: 21  DGDGEAGEAEQLQAHPPRAPPRYPLLHDVHLHREVDGERPEPHRAEEPHHVVEERQQHRH 80

Query: 94  DSGDDHEDCPP 104
                HE  PP
Sbjct: 81  HRRRHHERRPP 91

BLAST of Cp4.1LG06g06070 vs. ExPASy TrEMBL
Match: A0A0P0X247 (Os07g0134101 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0134101 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.32e-04
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 35 GDYEASQAENLEADPSCAPFWDLHLCNVHFNREVDSERPKSQGSEKSDDVVEEREEHRDD 94
          GD EA +AE++   P      DL L +VH + EVD ERP+  G++++++VVEE E H  D
Sbjct: 18 GDDEAGEAEHVHPRPRRRESPDLGLRHVHLDGEVDGERPEGDGADEAEEVVEEGERHGGD 77

Query: 95 SG 96
           G
Sbjct: 78 GG 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
BAS75576.11.14e-0853.45Os01g0882900, partial [Oryza sativa Japonica Group][more]
KAB8084618.12.92e-0851.72hypothetical protein EE612_007205, partial [Oryza sativa][more]
KAB8114528.12.38e-0650.75hypothetical protein EE612_053998, partial [Oryza sativa][more]
BAT78679.13.32e-0650.88hypothetical protein VIGAN_02139000 [Vigna angularis var. angularis][more]
BAT13040.15.15e-0650.79Os11g0195650, partial [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
A0A0P0VB875.54e-0953.45Os01g0882900 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
A0A0S3RDM51.61e-0650.88Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G... [more]
A0A0P0Y0292.49e-0650.79Os11g0195650 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11... [more]
A0A0P0WML01.24e-0546.48Os05g0424100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os05... [more]
A0A0P0X2474.32e-0443.55Os07g0134101 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0134101 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g06070.1Cp4.1LG06g06070.1mRNA