Cp4.1LG06g05800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g05800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SR45-like
Location	Cp4.1LG06: 3514196 .. 3521072 (-)
RNA-Seq Expression	Cp4.1LG06g05800
Synteny	Cp4.1LG06g05800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCCATTCGGTTCCGTACGAATACGTTTCGACCATTTCTGTGTCGCTTTTCTCTTCAATATCTCTAAATCCCAAACGAGACGGGTTTAAGTTAGGGTTTCAAATTTCGCTCTGCAGCTATTGCCGGCCATGGCTAAACCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCGTACTCCGGCTCTGGTTCCCGCTCCAGTTCCCGCTCGCGTTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAAGTCCATTTCCTCGTCTTCGTCTCTGTCTCGAAGCGGTACTTCTCGAAGCCGAAGCCCCCCTCCTCAAAGAAAGAGGTTCGTCTTTCTTTTGAGCTTGCATTTTTCGTTCTGAGGTCTTGCATTTGGTGCTTATTGGTTGTCAGTGTGAGAGGAAGTATCGGAATTAGGTATTCTATGCTTGGGAGGTTGGTCGATTATGCATTTTCTTTTTTGTCGCTGTTGATTGGTTTTTCTTGTATTTATTCGAAGGCATGTTTTGGAATCATTACGTTATCGAGAAACAGACGCGCTCCATATACCAAAAACCGTTTTTATGCGGTCATTGTATATCGCTATCACATCTTCATTTGTTTTTCAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGTAATAATACCTCGCCTACAGTTAAATCCAACTTCTCATTTTTTATCATCTTATTGACATTTAGGCTCTTCATTATTTGTTCATGGCATGCATTTTCCGATAAGCCTCTTACATTTATACTTTGGCGCGGTTTTTTATCCCCGCCTTTTGTTAAAGACTGCTTCCGAGCCTCTTCAATGGTTGTTTTTCTGCTGTTTGTTTAGTAAGTTACAAATTATGGATGACAAGGGAACAATTTCGCTTTCAAAAGAAGGTCAGAGTCTAAACCAAAGGAGTTAAAAGAATCCAATTGGTCAAAAGTGTAGAGAGACCATAAGATTTATAAAGGAAGTGCATTTACCCAAAGACGTTGTTTGGAAGTAAATTTGCTTAAAATAATGATCAAAAGTGTTGTACTTATCTTGAAAGAGATTATGGTTACGTTCATTCCATGTTGTCCACAAAAAAATCCGAAATGCATCCAAAGAACTCCCCCCCTCCCAAAAGAAAAATGGAACCTTCTTTCGATGAAAATCTGTCCATATCTCTCCTCAAAGAGGATGCGGATCTGTTTCGAACAAACTGAAAAACAAAGAAGATAAGATTTTGATGTATTTACCTCTTAAAAATCTGTCTATACTGTTTTTTGAACTTAAATATGGTTTAATATATTATTTTTTTATTTTATTCTAAGAAGCTCATTATTCCTTATCATTTAGTCAATTAAAACATGGTTTGATTTAAATCCTTAACTATTTAACGAAGCATTAAAAAAATCTTTGAATTCAATAATTTTACGGAACTGTAGTGTAACTATTGCATTATTTTAACTTTTAATCATTTTTTGCCCTTGTTGAACTCAAATGTGATAAAGAATGTTCTATTAGCTTTAATTATCTTGCAACTAAATTTTATCTTAGTAATCTATAATCACTTGCAAATGTATATGTAATTGACTATTTAAAAGCTGACATTTGCATTTTTTTAATACCAATATTTTCTTTAGTCATGCATCTGTATTATCAGCGATTTACATATAATTCTTTCATTTTGTGATATTTTCCTTGCCTGTCAGTTGTATTTATATAATTTGCTTATCACGCTGTCAATTGATTTCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGCCATTTAAAAGAAATCTTCAGTATGGTTTTTCACTCGCTTTATTTAGCATTTAAACAATTTTTCTGTTGGATAAATGCACTTATTTCTTCAGATCGTTCTTTTTTTAAAAGTTACAAGTAAAATTCATCAATTAAAACCGAAGAGTAAGAGAAAAGAAAATCTTATTTCAACCTTCAATCACATTATGTGAAAGATACAACACTTTGACTTCATGAACCTAGTATTTTGTCTTACAAAAAAAGACTTTGTGTAAACGTATGTATTTATGTATTAGATTCAATTCAACCTAGCCTGTTTATTGGTAATGATCATTGACCGTGTTGTTTTGTCCTCAATAATTGAGTAATTTGTCTTATCAATTACTCTTCATCACGGCATGCTCATTCCTTCCTTTCCTCTCGACTGTTTTGAAATTATAGACAGTTCATTTTCATGAATTTTTTATCCTCATTCAATTGAAGTGATCCCCTTAAATACGATTTTCCCTCCAAAAGTCTCCATCTATTTAGTTAGGATTGATGATATTGGATTGAATAGGTAATTTGTTATTTTATAAAAAAATTGTAACTCTTATGAATTTCCTTTTTTTTTTCTTTTTCTTGATACCCTTTAGGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTGAGTCCTTACCATGCATATTGTATTTGAAGAACTTTTTCTTGAATAATATATTGATGCATCTGTTTTAATATTTACAGGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGTATGTTTTTCTTAAATGTTCAAGTACTTGAAGTACATCTATTGATAATTTCTCATAACTGGGAAATGATTGTGATGGTTGGCTGAATGTAGGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGAATGACATGAAAAGACAGAGAGAACGTATAATTGTTTTTGCCTATTATTCTATTCTATTTTTCATGAGGATATATTATTTTAGTGATTTATGTCTGGTTTGTCACATCAGCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCAAGGCGACATAGATCTCCTCCAAGGTTGACCATCATCCCCCCACTCTTCAACCCCCCAGCCTCACACACACACACAATCTATCTCCTTTCCTGTAAATAGTGGGAGCATTAACATTGTTTAACTTCGGTTGAATAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGGTATTACACATTTGACTGTTCTGAGATATCGTAGTATTTTTTCTTGCAGTTTATTTGAATGGTACACAGACATGTTTATTGTTTCTAACTTCACAAATCTTCATATAATGACAAGGTGAACTATTTATGACTTACTGCACGTGTTAAGTTTAATCTTATTGTTTCTGAGTTAGAGTAAACGTCTGGAGAGTAGTGAATTATGCAGGACCATATGTTAATATCAATTTTTATTTTGAGCTTTTGATTTTAGAGTGTGTTTCTTTTATTTTTAGATTTCCAGCTACATCAGGTATTTTGTAGAATAAAAATTGCATCAGGTTTTGTTTAGTTGTGCGGTTTTTGTTTGCCATTGATCATTTTGTTATGCCTAGACACAGGTAACTGTGGTTTTTGGGTGATCCGAGCAAATTCAAAATAATGCTATTTCAGACTTAGAATGAAGTAGCAATCTGAGTTACTCTTGATGTATTTAAAACTAATTATGGTACAAAGGTGTTCCTGTAGTTTAATCTTAGGCATTAGAAGAATGGTGACTGGGGGCATGATTACTTTCTAATGTTTGAGAAGTTTAAGCATTTAAGCATGGCAGTGGGAGCTTTTAATTGCTTGTTCACTATGGTTGACCCATGGTTTTTACTTGAAAATGATGTAGTCTGACTCAGTGGTCTCAGTTATGTTTTTGCTTAGGTATATGAGCATTACTTAACTAAATTGTGTTTCTTTCAGTACACCGCCTCGCCGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCGATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCGCGGAGGTAACTTGATGCCTAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTAAAGAAAAAATATTAGTATCTATGGATGCCCAATGAACTTTTTTTTCATGATCAACTCCCTTCTAAAGAAAAATTATTTCATATTGTTTGCTTGTCCACTCTGTTTGTGGTGCATAAATTAAATGATGAAGTAGACACAGAAGTCCCAACCATTGGCATCGATCAAGAAAGGATAATAGTCATAATAAACCATTTCTGAACAGCCCCAAGTGAGGGCTATGAAACAAGTTCAAAGATTCTCATGTTCTAGTTTTCCATCATAGCACGTTGCTAGTACTGAGCCAAAGAATTATATTGGTGTAGGAAGCTAGTAAAATTGTTGTAAAGTCTGTTGTTTTCTCACTTTATTGGAGTATTTGCTATCCAAATCGTTTTAGAAAACACTCGAGTAATTGCTCTAGATTTTGTTCATAAGATGTTTGAATCGAGATTTGGAAATCAAATGACCGATTTTCAGCATTCCATGTTCTAGAGTCTTTCCTTTGGGTCCTGAGGGGTCCTTTCGATCTAGACAATTGGGGCCAGACATTCCAGGGAAGCAAATCTAAAGTTGAGCATTCACAAGGTGTCCTTTAATAATTGTGATAACGTCTAAGATGCTCTTGGCTAAAGTTAGTTGCCACTTGCCAGGCCAAGTTTCTTCCAAAAGAAGCAAACGTTGACAGATGTATAAGCTTCTTTTCAATTGCAGTTTTTTTTAAGCAAACTTTGACAGATTTCTGGTGTTGTGGTCTTGGGATTTCATATTACAACAATGCTTAGAAACTAAGCTTTAAACGATCTCAAGTTCCTATTTCTTACCTGAAACTTTGTATAGGAAATAATAACCTCCAAATTCCCCAAAAAGGTATGTGCGTAGTTGCCTATTAGTGGATAACATTTGTTTTGTATAGTTAGCTTTTAGAAAGGATGCGAATAATGTGCATCTGTAGTCATATTGCATGTTCCATTTGTAGGGATTTTGGTGTGAGAAGTCTTCTTCAATGGCAGGAAAGATCTTATTGTAATGTTTGGTCCGTTGTTAAATTCTATGTTTCTCTTTGAACTTTGGCTAGTTGGTCAATTTGTAATTACTCGCTAGATCATATTTTATTGGAGTGAGACCCCCTTTTTGTAGCTTGTTGCTTGCTTCATATTTCTTCTGGCCTTTTGTTTTGTATGTCCGTGTATTCTTATGGTTCTCTCTATACAGAGGTCGGCCTGCAGCTGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTTTGCTGTGATTGATCTTGCCATTTTTTTTCACCGCTCTGGGTTTATTATTGTTCGTTCTTCCTTGCATCCCGAGCGCCTTCATTGTTCTCTATTTTAAATTACAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGTAACTCTGTGCATTTGATATTCCAAAAATGTTAGGAATTTTCGATATTCTTGTAGGCCAGTTTGCTGCCCAGTTTAAATCACTTGACTTTTCCATGGACTTTTGCCGTTTCTTTTTAACTAAAGACGAGTGTGTTTCCAAACCCATAAACCCACAGAGAACCACTGCAATTGGATTATTCTATATATCGAGCTTACAGATACCGAGTATAACAAGTCTGGAATGACTTCTGAAAGAAAGTACTTAAATACTTTTGAAGTGTTTTTAAGTTACGTTGTGAGATCCTATATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGGCGTGGAAACCTCTCTCTAGTAGACGTGTGGAAACTTCTCTTAAAACCATGAAGGCTGATGACAATATGTAACGGGCCAAAGTAGACAATATCTACTAGCGGTAGGCTTAGGCTGTTGTTACAAATAACATAAGAGCTAGACACCCGACGGTGTGCGGCCCCGAAGGGGAGTGGATTGTTAGATCCCACATTGGTTGGAGAGAAAAACGAAACATTCCTTATAAAAGCATGGAAACCTCTTCTTAATAGATGCTTTATAAAATCGTGAGGCTGATGGGTTGAAGCAGACAATATCAACTAACAATGGACTTGGGCCGTTACATATGTGCTCTTGATCATCTAACCAAACATCCATTAATTCTCTCTTAATCATATTATTACAAGCATTATTATAATATACATACATATTTAATTATGTTGTGCGATCGTTTGGTGTACAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAAGAAAGAACTCTACACATTTTGCGCCCTCTCACTCCCTAATTCTCTCTTGTTCTATCTGTGTATTCCAAAAGATGCGACATTTTTTCCCCACACCTGGTGAAGAGCCGAGCCTTCTTGTAGTGAAAATATTTGTGGATTAAATGCCATTTTGGGCTTGTCAGCAGTAGTTAGTTTCCTGTCACTATTGAATCAAAACATTTTGATATCCATGCTTCTAACTGCACTCTGTTGTATTATTACATTTCTTCTACTATACAAAGGCTCAGACGTCGAGTTCTCCCATTTCTTATTCGTTTTAGAGACATCCCCTTGTATTT

mRNA sequence

TGGTCCATTCGGTTCCGTACGAATACGTTTCGACCATTTCTGTGTCGCTTTTCTCTTCAATATCTCTAAATCCCAAACGAGACGGGTTTAAGTTAGGGTTTCAAATTTCGCTCTGCAGCTATTGCCGGCCATGGCTAAACCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCGTACTCCGGCTCTGGTTCCCGCTCCAGTTCCCGCTCGCGTTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAAGTCCATTTCCTCGTCTTCGTCTCTGTCTCGAAGCGGTACTTCTCGAAGCCGAAGCCCCCCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGCCATTTAAAAGAAATCTTCAGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCAAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGCCGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCGATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCGCGGAGAGGTCGGCCTGCAGCTGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAAGAAAGAACTCTACACATTTTGCGCCCTCTCACTCCCTAATTCTCTCTTGTTCTATCTGTGTATTCCAAAAGATGCGACATTTTTTCCCCACACCTGGTGAAGAGCCGAGCCTTCTTGTAGTGAAAATATTTGTGGATTAAATGCCATTTTGGGCTTGTCAGCAGTAGTTAGTTTCCTGTCACTATTGAATCAAAACATTTTGATATCCATGCTTCTAACTGCACTCTGTTGTATTATTACATTTCTTCTACTATACAAAGGCTCAGACGTCGAGTTCTCCCATTTCTTATTCGTTTTAGAGACATCCCCTTGTATTT

Coding sequence (CDS)

ATGGCTAAACCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCGTACTCCGGCTCTGGTTCCCGCTCCAGTTCCCGCTCGCGTTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAAGTCCATTTCCTCGTCTTCGTCTCTGTCTCGAAGCGGTACTTCTCGAAGCCGAAGCCCCCCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGCCATTTAAAAGAAATCTTCAGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCAAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGCCGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCGATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCGCGGAGAGGTCGGCCTGCAGCTGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAA

Protein sequence

MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSRSGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP

Homology

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot
Match: Q9SEE9 (Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-109
Identity = 289/420 (68.81%), Postives = 331/420 (78.81%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRS+S+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S +S SRSPP + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
            HLKEIF NFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRRGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 413
           PR+GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 PRKGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot
Match: Q28E41 (RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=rnps1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-19
Identity = 110/261 (42.15%), Postives = 141/261 (54.02%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSRSGTS 64
           +R RRS  SGS SSSRSRS S S S S S S S S S S S S S+S SSSSS S S +S
Sbjct: 64  ARKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSSAS-SRSGSSSSSRSSSSSS 123

Query: 65  RSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLK 124
            S SP P R+  ++  RR+R+     KR     ++ SP      +HI  L+RNV + H+ 
Sbjct: 124 SSGSPSPSRRR-HDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHIL 183

Query: 125 EIFSNFGEVVHVELAMDR-TVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
           EIFS +G++  +++ +DR   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 184 EIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAV 243

Query: 185 LPQRQKIPTPPRTVA---TAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 244
           L      P P R +    + P+R  P P           M R+  P  RR+  SPRRRSP
Sbjct: 244 L-----TPWPMRAMPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSP 303

Query: 245 IARRGGSPRRQPDSPRRRPES 262
           + RR  SP R+    R    S
Sbjct: 304 VRRRSRSPARRRHRSRSSSNS 307

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot
Match: Q3KPW1 (RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnps1-b PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-19
Identity = 108/261 (41.38%), Postives = 140/261 (53.64%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSRSGTS 64
           ++ RRS  SGS SSSRSRS S S S S S S S S S S + SRS   SSSSS S S +S
Sbjct: 39  AKKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSASSRSG--SSSSSRSSSSSS 98

Query: 65  RSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLK 124
            S SP P R+  ++  RR+R+     KR     ++ SP      +HI  L+RNV + H+ 
Sbjct: 99  SSGSPSPSRRR-HDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHIL 158

Query: 125 EIFSNFGEVVHVELAMDR-TVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
           EIFS +G++  +++ +DR   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 159 EIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAV 218

Query: 185 LPQRQKIPTPPRTVA---TAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 244
           L      P P R +    + P+R  P P           M R+  P  RR+  SPRRRSP
Sbjct: 219 L-----TPWPMRAMPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSP 278

Query: 245 IARRGGSPRRQPDSPRRRPES 262
           + RR  SP R+    R    S
Sbjct: 279 VRRRSRSPARRRHRSRSSSNS 281

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot
Match: Q5XG24 (RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnps1-a PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-19
Identity = 107/258 (41.47%), Postives = 138/258 (53.49%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSRSGTS 64
           ++ RRS  SGS SSS SRS S S S S S S S S S S + SRS   SSSSS S S +S
Sbjct: 39  AKKRRSGSSGSSSSSHSRSSSSSSSSSGSSSGSSSGSSSSASSRSG--SSSSSRSSSSSS 98

Query: 65  RSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLK 124
            S SP P R+  ++  RR+R+     KR     ++ SP      +HI  L+RNV + H+ 
Sbjct: 99  SSGSPSPSRRR-HDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHIL 158

Query: 125 EIFSNFGEVVHVELAMDR-TVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
           EIFS +G++  +++ +DR   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 159 EIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAV 218

Query: 185 LPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIAR 244
           L      P P R   + P+R  P P           M R+  P  RR+  SPRRRSP+ R
Sbjct: 219 LTPWPMRPMPRR--FSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRR 278

Query: 245 RGGSPRRQPDSPRRRPES 262
           R  SP R+    R    S
Sbjct: 279 RSRSPARRRHRSRSSSNS 281

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot
Match: Q15287 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-19
Identity = 107/258 (41.47%), Postives = 143/258 (55.43%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSRSGTS 64
           +R RRS  SGS SS+RSRS S S S SS+ + S S S S S S S+S SSS+S S S +S
Sbjct: 62  TRKRRSASSGS-SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSS 121

Query: 65  RSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGHLK 124
            S SP P R+  ++  RR+R+   P KR     ++ SP  +   +HI  L+RNV + H+ 
Sbjct: 122 SSGSPSPSRRR-HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 181

Query: 125 EIFSNFGEVVHVELAMDRT-VNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
           EIFS +G++  +++ ++R   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 182 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 241

Query: 185 LPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIAR 244
           L      P PP    + P+R  P P           M R+  P  RR+  SPRRRSP+ R
Sbjct: 242 L---APWPRPPPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRR 301

Query: 245 RGGSPRRQPDSPRRRPES 262
           R  SP R+    R    S
Sbjct: 302 RSRSPGRRRHRSRSSSNS 303

[Close]

BLAST of Cp4.1LG06g05800 vs. NCBI nr
Match: XP_023536426.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 702 bits (1811), Expect = 7.43e-253
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Cp4.1LG06g05800 vs. NCBI nr
Match: KAG6591837.1 (Serine/arginine-rich splicing factor SR45, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 691 bits (1784), Expect = 9.62e-249
Identity = 407/412 (98.79%), Postives = 410/412 (99.51%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGS SSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSP PQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQP+SPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPNSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Cp4.1LG06g05800 vs. NCBI nr
Match: XP_022936958.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita moschata])

HSP 1 Score: 685 bits (1768), Expect = 2.53e-246
Identity = 406/412 (98.54%), Postives = 408/412 (99.03%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSS RSRSYSGSGSRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSS-RSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSP PQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRG RSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGCRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRS SYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSPSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG06g05800 vs. NCBI nr
Match: XP_022976788.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita maxima])

HSP 1 Score: 681 bits (1756), Expect = 1.77e-244
Identity = 403/412 (97.82%), Postives = 406/412 (98.54%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGTSRSRSP PQRKSPNETARRTRAS P AKRISPPPRKPSPVRESLVLHID LSRNVHE
Sbjct: 61  SGTSRSRSPAPQRKSPNETARRTRASSPLAKRISPPPRKPSPVRESLVLHIDPLSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATA KRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATASKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRR+SRSPIRRPARSRSRSSSPRRG+
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRKSRSPIRRPARSRSRSSSPRRGQ 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRSSSYSASPSPRKVPRRV RSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVYRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Cp4.1LG06g05800 vs. NCBI nr
Match: KAG7024701.1 (RNA-binding protein with serine-rich domain 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 672 bits (1735), Expect = 2.15e-241
Identity = 401/412 (97.33%), Postives = 403/412 (97.82%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGS SSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSP PQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 405

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL
Match: A0A6J1FEP9 (serine/arginine-rich splicing factor SR45-like OS=Cucurbita moschata OX=3662 GN=LOC111443390 PE=4 SV=1)

HSP 1 Score: 685 bits (1768), Expect = 1.23e-246
Identity = 406/412 (98.54%), Postives = 408/412 (99.03%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSS RSRSYSGSGSRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSS-RSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSP PQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRG RSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGCRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRS SYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSPSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL
Match: A0A6J1IN70 (serine/arginine-rich splicing factor SR45-like OS=Cucurbita maxima OX=3661 GN=LOC111477064 PE=4 SV=1)

HSP 1 Score: 681 bits (1756), Expect = 8.56e-245
Identity = 403/412 (97.82%), Postives = 406/412 (98.54%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGTSRSRSP PQRKSPNETARRTRAS P AKRISPPPRKPSPVRESLVLHID LSRNVHE
Sbjct: 61  SGTSRSRSPAPQRKSPNETARRTRASSPLAKRISPPPRKPSPVRESLVLHIDPLSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATA KRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATASKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRR+SRSPIRRPARSRSRSSSPRRG+
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRKSRSPIRRPARSRSRSSSPRRGQ 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           PAAAGRRGRSSSYSASPSPRKVPRRV RSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVYRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL
Match: A0A0A0KZM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV=1)

HSP 1 Score: 652 bits (1681), Expect = 2.91e-233
Identity = 388/419 (92.60%), Postives = 401/419 (95.70%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGS SSSRSRS+SGS SRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSASSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSPPPQRKSP ETARR+RASPPPAKR SPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHL+EIFSNFGEVV+VELAMDRTVNLPKGYGYVEFKTR DAEKAQ++MDGAQIDGNVIR 
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQK+PTPPRTVAT PKRDGPKPENVG DAEK+DMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEKDDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESP-------PRRRPASPMRGGRSPSPLARRHR 300
           +ARRGGSPRRQPDSPRRRP+SPPRRR+ESP       PRRRPASPMRGGRSPSPLARRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPDSPPRRRIESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360
           SPPRPSPRRIR SPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 SSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
            SPRRGRP AAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL
Match: A0A1S3CPA3 (serine/arginine-rich splicing factor SR45 OS=Cucumis melo OX=3656 GN=LOC103503047 PE=4 SV=1)

HSP 1 Score: 644 bits (1660), Expect = 4.58e-230
Identity = 386/419 (92.12%), Postives = 399/419 (95.23%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRS+SGS SRSSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSR+PPPQRKSP ETARR+RASPPPAKR SPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRTPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHL+EIFSNFGEVV+VELAMDRTVNLPKGYGYVEFKTR DAEKAQ++MDGAQIDGNVIR 
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQK+PTPPRTVAT  KRDGPKPENVG DAEK+DMKRQRE SPRRK PSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVSKRDGPKPENVGPDAEKDDMKRQRESSPRRKLPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESP-------PRRRPASPMRGGRSPSPLARRHR 300
           +ARRGGSPRRQPDSPRRRPESPPRRR+ESP       PRRRPASPMRGGRSPSPLARRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPESPPRRRVESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360
           SPPRPSPRRIR SPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 SSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
            SPRRGRP AAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL
Match: A0A6J1FJN7 (serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445960 PE=4 SV=1)

HSP 1 Score: 624 bits (1610), Expect = 1.34e-222
Identity = 376/412 (91.26%), Postives = 388/412 (94.17%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRSPPS SGSSSRSRSYSGS SRSSSRSRSRS SVS S SRS  ISSSSS SR
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRS--ISSSSSPSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S +SRSRSPPPQRKS  ETARRTRASPPPAKR SPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SASSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           GHL+EIFSNFGEVV+VELAMDRTVNLPKGYGYVEFKTR DAEKAQ++MDGAQIDGNVIR 
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQK+ +PPRT A A KRDGPKPENVGADAEK+D+KRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           +ARRGGSPRRQPDSPRRRPESPPRRR++SPPRRRPASPMRGGRSPSPL RRHRSPPRPSP
Sbjct: 241 VARRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIR SPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRP RSRSRS SPRRGR
Sbjct: 301 RRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412
           P AAGRRGRSSSYSASPSPRKV RRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Cp4.1LG06g05800 vs. TAIR 10
Match: AT1G16610.1 (arginine/serine-rich 45 )

HSP 1 Score: 398.3 bits (1022), Expect = 7.6e-111
Identity = 289/420 (68.81%), Postives = 331/420 (78.81%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRS+S+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S +S SRSPP + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
            HLKEIF NFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRRGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 413
           PR+GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 PRKGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Cp4.1LG06g05800 vs. TAIR 10
Match: AT1G16610.2 (arginine/serine-rich 45 )

HSP 1 Score: 391.7 bits (1005), Expect = 7.1e-109
Identity = 285/418 (68.18%), Postives = 327/418 (78.23%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRS+S+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S +S SRSPP + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
            HLKEIF NFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   R+    PR +  SPRRRSP
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRR----PRER-LSPRRRSP 240

Query: 241 IARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRP 300
           + RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPPR 
Sbjct: 241 LPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG 300

Query: 301 SPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPR 360
           SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S SPR
Sbjct: 301 SPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPR 360

Query: 361 RGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 413
           +GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 KGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 402

[Close]

BLAST of Cp4.1LG06g05800 vs. TAIR 10
Match: AT1G16610.3 (arginine/serine-rich 45 )

HSP 1 Score: 391.0 bits (1003), Expect = 1.2e-108
Identity = 288/430 (66.98%), Postives = 330/430 (76.74%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRS+S+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S +S SRSPP + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
            HLKEIF NFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRR----------GRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRS 413
           PR+          G    AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS S
Sbjct: 361 PRKYVGTHLNFFLGGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNS 420

[Close]

BLAST of Cp4.1LG06g05800 vs. TAIR 10
Match: AT2G29210.1 (splicing factor PWI domain-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 3.3e-05
Identity = 96/237 (40.51%), Postives = 114/237 (48.10%), Query Frame = 0


Query: 185 PQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARR 244
           P+R++I +P R+ + +P R   +P + G        +R+R PS    PP+ RRRSP    
Sbjct: 272 PRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPS----PPARRRRSP---- 331

Query: 245 GGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIR 304
                  P + RRR  SPP RR      R P  P R  RSPSP ARRHRSPP    RR  
Sbjct: 332 ------SPPARRRRSPSPPARR-----HRSPTPPARQRRSPSPPARRHRSPPPARRRRSP 391

Query: 305 DSPVRRR---SPPPPRRRTPP---RRARSPPRRSPVVRR-RSRSPIRRPARSRS--RSSS 364
             P RRR   SPP  RRR+P    RR RSP   SP+ RR RSRSP+ +  RS S  RS S
Sbjct: 392 SPPARRRRSPSPPARRRRSPSPLYRRNRSP---SPLYRRNRSRSPLAKRGRSDSPGRSPS 451

Query: 365 P-RRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRK 412
           P  R R     R    S     PSP    R  S  PRR             S PPR+
Sbjct: 452 PVARLRDPTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSPPPRR 486

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE9	1.1e-109	68.81	Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR4...	[more]
Q28E41	1.3e-19	42.15	RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=r...	[more]
Q3KPW1	6.7e-19	41.38	RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q5XG24	8.7e-19	41.47	RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q15287	8.7e-19	41.47	RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 P...	[more]

BLAST of Cp4.1LG06g05800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536426.1	7.43e-253	100.00	serine/arginine-rich splicing factor SR45-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591837.1	9.62e-249	98.79	Serine/arginine-rich splicing factor SR45, partial [Cucurbita argyrosperma subsp...	[more]
XP_022936958.1	2.53e-246	98.54	serine/arginine-rich splicing factor SR45-like [Cucurbita moschata]	[more]
XP_022976788.1	1.77e-244	97.82	serine/arginine-rich splicing factor SR45-like [Cucurbita maxima]	[more]
KAG7024701.1	2.15e-241	97.33	RNA-binding protein with serine-rich domain 1 [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Cp4.1LG06g05800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEP9	1.23e-246	98.54	serine/arginine-rich splicing factor SR45-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IN70	8.56e-245	97.82	serine/arginine-rich splicing factor SR45-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KZM9	2.91e-233	92.60	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV...	[more]
A0A1S3CPA3	4.58e-230	92.12	serine/arginine-rich splicing factor SR45 OS=Cucumis melo OX=3656 GN=LOC10350304...	[more]
A0A6J1FJN7	1.34e-222	91.26	serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata ...	[more]

BLAST of Cp4.1LG06g05800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16610.1	7.6e-111	68.81	arginine/serine-rich 45	[more]
AT1G16610.2	7.1e-109	68.18	arginine/serine-rich 45	[more]
AT1G16610.3	1.2e-108	66.98	arginine/serine-rich 45	[more]
AT2G29210.1	3.3e-05	40.51	splicing factor PWI domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..181 e-value: 9.5E-18 score: 75.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 111..179 e-value: 1.5E-14 score: 53.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..185 score: 15.596196
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..190 e-value: 7.5E-23 score: 83.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..76
None	No IPR available	PANTHER	PTHR15481:SF9	BNAA09G56240D PROTEIN	coord: 20..403
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 20..403
IPR034201	RNPS1, RNA recognition motif	CDD	cd12365	RRM_RNPS1	coord: 109..181 e-value: 1.70082E-37 score: 128.827
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 89..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g05800.1	Cp4.1LG06g05800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding