Cp4.1LG06g05140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g05140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG06: 3060932 .. 3064712 (-)
RNA-Seq Expression	Cp4.1LG06g05140
Synteny	Cp4.1LG06g05140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTGCATTTCTCCGTTGTTATCGATTCTGTATCTTCTTCGTGCAGATTGAGAGGCATTTACAGAGACATGGAGGCAGATTCGAGCAGAATCAGGCGTATTCCCGTTCCTGCTATGGCGCAGTAAGTGTATACTTCTTTTTTCTTTTTTCTGGAGTTTTGTATTGGAACAATGTTTGATTGCATTTTCAAGTTCTTCGGGAGAAATCCGGGGACATCGGTAGCTTACTCGTTCTAGATCGGACTAGCCTGCCAATTCGGAATTTGATAACATAGTCAAATAAGACTAACCTCGCGATACCTGTAATTCTTATCAAGATGTGTGTGAAGCTTATCCTAGGAAAGGTTGGGCTCTGTCTCATCCAAATCGATTATCGTGCTTCCAGATACATAATCCATTAGCATCGTTTCAGTGGAATACTTTTAATATTAGCAACTAGTTTGAAATGAGAAATTTGCTACATGATTATTAGCAGATTAACTTTTGGAGGTGATTTTCCAGGTGTTGTAAACCCTAAGTACGGGTAGGCTTCTTTTTGTTTGTTTGAAGTTTGGTAAATCATCCTTACTCGGTGGAATCTTACACTATTTTATCTTATATTTTGAATGTATTTTTTGCCTAAATCCAAGACTCACTAGTGTGGATGAGGGAGAGAAGAAAGAACTTAAGTTACTCATTTGCCATTTTTTCTTAACTTTTCCATGAAGGATATGCTGTCCTTTGGATGGATCGATGTGTGGGAAATACTTTCAATGAACATCGTATGCATATTTCCTGGCCCCTTGATTCTCTATCTCTCTAAAGTTATACTTCGATGCTATGCTGTTCTGTGTAACTCAACACTTGAGGGGCATAGAAGGAGAAAGCTTCCCAGCTCTTTTCATGGAGTTGTTTTCTTCTATAACCTGTCTCTTATAAAGTTGGGATCTTCTACTTTTATTCTAAAGTTTCCTGATTTCAATTTTTATGCAATGCTTTGATTCATGCTCCTAAATGGCTTTTGCGGCCTTGTGATATGTCTCAGAATTTTTCGGGTGTCTTAACTTCCAATCATATTGCATTTTTCAGGTGACACTCACAGAGGAGCAGATCTCTTTCTTTCACTTCTTAACAAATGCATGCGCCATAGTTGGAGGTAATTTACAAGAGTTATTTGAACCTTAATCAGTTAGATAAATTTTACCTAAACTTGTAGCAGTAATTTAAACCCCCTAAAAACATGCACATAAAGAACTATAATCATTTTTCTTCCTGGCCAGTTCCTTCCCTCTTTCTTTATATAATCTGTTAAAGGGATACATGTTAGAAATCACTATCTCAAAGATGAAATAATATTGTCTACTTTAAATGTTTAAATCTAGTAGCTTTTAATTTTCCCAGAAATAGATGTTAATCATAATTATTAGCCATTTATTTAGCCATCCTTAACTCTTTGAAGTACTCTCCTACCAATTCTCAACAATACCAAGTACTCTCCTACCTATCCTCAACAATAATTTGTCCAAAGAGGGGAGTATACAGGTTAATTATAGGATATCTTTGGTCCATATTACGAAGTTGAACTAATCATTTGTTTTACTGCAAATATTAGACAACAGTAACAGACCAATCAAAAAATGGTTACAGTTACTACAACTATAGAAAGAAAAAAGAACACCAAAATTAAAAACCATATCATGGTCTACCAAGAAAAAAACCAGCTGACCACGAACATTTTTACATGATATTGACACAATGCCCACTTAAAAGAATTTGAGCCTTGAGTCTCTGCCTGCAACCTCAAAAAAAGTCCGTTGCAGGTGCTGTTGAAGATTTGGATCGAATTATTGAGGTAAGATTGATGCCCAATCTATCTCAGAAGGATATTTCTCTAGCATCGAGGTCTCCCAAGCTAGATTTTGATCCCATGGCAGCTCTGTGAAGTCCGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGTAGAGGGTTATACTCGCCGAATTCGCCTTCAAAGCAGGAGCCTTGGTGCTTGAGGTGGGGGAAATTAAGTCTGGCAGAGTCACCTCGAAGCTTGAAGGCTGCCTTATCATATGCCAAGGCAGCTTCTTCAGCAGTGTCAAAGGTACCGAGCCAGAGCCGAGTTCTGTTCCTTGGGAGTCGGATCTCGGCCACCCATTTTCCCCAATGCCGTTGCCTGACCCCTCTGTAAAGCTTATTAGTGGGTTTTGAAGACGAACCCACTTGCTTCATTGGGGTCGGCTTGGGGCTGAGGAAGTTGGGCGTTATTTGTTCATAGCAGGGTAGCGGTTGATGGTTTTGTTGCTCCAAAGCAAAAGGTAGTGGGGTTTGGTTTTGAAGAAGATTGACTTGAGGTTGGGAGTGAAGGTTTTGAGGTAATGATAACTGATGGGGTCCAATTGTGAATGGCTGTTCAAAACCAACGAGGTTTTGGGTCGAGAACCCATTTGAAAATCCTGGGTTCATCGAAGTGGAGCAGCCATTTGAGTACAAAGTGGACTGTTGAGGGGCAGAGTGAGAGAAGCTGAGGTGGTTGTTGGTACAAGGAGGGAGATATGGTGCTGGTGATGAAGAGGAGGAAGAAGAAGAAGATGGAAGATTTGTAGAGAGAGAGGAAGCAACTTTCATAAAAGGTAAAATTGCTTCCATTAGTTCACCACCAAAGTGGTCTGTTTGAGGTCCTTCATTGTAGAAATCCATGGCAGTTACCATTACTTCAATGGTCCGCCAAAAATGAAATGACCCCAAAAGGAAAAGGGAAAAAAGAAAAAAAAAAAGAAGTATCTCTTTACAGATGAACCTGATTCTTGTTAAAATAGAAAGAACAGGCCACCACTGAAAATATCAAAGAGGTCTGTAAATAGACAACCCCTTCAACTCTAAAAAGAAATCAAAAACAGAAGAAGAAGAAGAAGAAAAGGAAACCAACCTTGAGGGACTAAATTCACCCTCCATGCTGATTGACCATAAGAAGAAAAACAAACGAAGTAACCTAAAGAAACATGGAAGAAAAACACACACACACACACACACACACAAATCCTGGATCTCTGAGAACACCTGCCTTTGCACAATCCTAAGTTTGGTTATTGTTCATTCCCGAAAAGACAAACCCAAAACCCAGAACCTGAAAGAACATACAATGAACAGAAAGGGATTCAGATAAGCGGGGAGTTTCAGAAGGGGGAAGAAGAGGAAGAAGAGGAAGAAGAAGGAAGTTCAAACTTGAAACACAGTTTATTTTGGTTTCTAGCCATTCTGAACTCTCACTGTCTCTCCGCCTACAATGCCTATTCCCCACGAGCAGCCTCCAATTTATAAGCCTCTAATGCCTGAAATTCACTTACCTTAATCACGGCGTCGTTAATGATCTCAGTTATCCGCCGTAACTTAGCTTCATAGTTACGCTCATCATCTCTGATTCTCCTAAAAGTTTCGCTGACCAAAAAACTCTCGTGTTCACACTTACTGACAAATATCTTAACTCTTTCATTTGCTTTGTAGATAACGATTCATCCCCCTTCTCACTATTCTTGATTCTTCAGATCCTGTCCGTTGGATATCATCGGTATGAAGCTGGTGGATGGCTGTGA

mRNA sequence

GTATTGCATTTCTCCGTTGTTATCGATTCTGTATCTTCTTCGTGCAGATTGAGAGGCATTTACAGAGACATGGAGGCAGATTCGAGCAGAATCAGGCGTATTCCCGTTCCTGCTATGGCGCAATTAACTTTTGGAGGTGATTTTCCAGGTGACACTCACAGAGGAGCAGATCTCTTTCTTTCACTTCTTAACAAATGCATGCGCCATAGTTGGAGCTCTGTGAAGTCCGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGAGGGAGATATGGTGCTGGTGATGAAGAGGAGGAAGAAGAAGAAGATGGAAGATTTGTAGAGAGAGAGGAAGCAACTTTCATAAAAGATAACGATTCATCCCCCTTCTCACTATTCTTGATTCTTCAGATCCTGTCCGTTGGATATCATCGGTATGAAGCTGGTGGATGGCTGTGA

Coding sequence (CDS)

ATGGAGGCAGATTCGAGCAGAATCAGGCGTATTCCCGTTCCTGCTATGGCGCAATTAACTTTTGGAGGTGATTTTCCAGGTGACACTCACAGAGGAGCAGATCTCTTTCTTTCACTTCTTAACAAATGCATGCGCCATAGTTGGAGCTCTGTGAAGTCCGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGA

Protein sequence

MEADSSRIRRIPVPAMAQLTFGGDFPGDTHRGADLFLSLLNKCMRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGFFELPCFCGLAKLSQIAWSFASTEE

Homology

[Close]

BLAST of Cp4.1LG06g05140 vs. NCBI nr
Match: KAG7024638.1 (hypothetical protein SDJN02_13456 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (433), Expect = 7.85e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 44  MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF 103
           MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF
Sbjct: 1   MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF 60

Query: 104 FELPCFCGLAKLSQIAWSFASTEE 127
           FELPCFCGLAKLSQIAWSFASTEE
Sbjct: 61  FELPCFCGLAKLSQIAWSFASTEE 84

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05140 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024638.1	7.85e-52	100.00	hypothetical protein SDJN02_13456 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG06g05140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05140 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g05140.1	Cp4.1LG06g05140.1	mRNA