Cp4.1LG06g04390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g04390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA-binding protein 38-like
Location	Cp4.1LG06: 2446811 .. 2449337 (+)
RNA-Seq Expression	Cp4.1LG06g04390
Synteny	Cp4.1LG06g04390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACATGTATAATTAAATTTAACTGTTAATATCTGATTCCGAAAGAATTTTATTGCCTTAACGTTCGACTCTTGTTAGTAATATTTGCACAGGTACTATACTACTCGATTCGAGATACTTCAAACCCTAAATTACAACTTTAACGGGGCGGGAGACGAGATTTGATTACACACGCTCGTTGAGGAATGATTCTTTTTTAAACCTACGAAAGGATGCTTCTCTGCTTTTTATAAGAGAGCACGTGCCAGAGTTTCATTACCAACCCTGTTAATTCGTACCCAAACACAAACCCAGTCCCATAAATATGAGTAAGCTAGTTCGAGAAGGCTTGTATTAAGTTAGAAACAGTAACATCTCAAGTATATTGTTGGCAGATATTGTTCAATTTAGTCGGTTACATATTGTTATCAAGTCTCACAAATTTAAAATACGTTTGTTCCAAAGTGTCTGTAAATTAAAAAATTTAAAAGAATAAAAATCTTAATTTTTTTTTTTATTGGGGATTTTAATGGTAAGACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCCTTTCTCTCAACCTATCAAAATTATAACAGCCATCACCAACGGCTTCAACCCCCTGCCAGTGGCATCATTTTTCTTAGCTACTTTCTTCTTCTTCATCCAATCCAACCCCAAAACTGCTGCTCGGTCGAAGAACGTATTCAAACCCGAGAGCTTTTTAGAGCCTCTCGATACATATCTATATCTATATCTATATCTATATTTCATGCAGAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAAGTTAGCCTCGTAATTATTTAAGTTTTTGAGTTTCGGGGTGATTTATATCATTATTCAGGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGTCGGTATTTTAGTTTATCTCTATCGTTTTTACCACGATTGTTGTTTATTCAAATTTTTGTTTTGGTATTCAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGGTCAGTCAAGTTATTCTCGAATTAGAAAGTTGGGTAGAAATCGTAAAGATTAAATTGAAATCAAGGATTAAACTAAATCAAATATGCGATTATTGATTAGATAAACAAAAGATTAAACGGGTTTAGAAATTGGGTATGAACAGAAATATATGGACCCACTGTTTGCTTGTCTTTGAAGTGTCAACCTCTGCATATCTCTATGATAGTATGATATTGTTCACTTAAAAAAAAACGCTCGAAATATACTCAATTATAAGTTACTTATCGCTCGATTTTCTACGTGGGTCTAGATTGATCTACGGTTTCATTTGGAAAGAAAGAAAGGGTGGTCACAATGGGTCAAAACCATTTATGTGATATCCCACAACGAAAGAAATCTGTCACTAGCAGACGTGTTTTAAAAACCTTTTTAAAGGGTGTGAAAATATATGGTAACGGTGGGCTTAGGCAGCGAGGTCAGCCCCACCGACCAATGGACAAACCCAAAACCAATACAACTGTAACACCAATCAATGTGTTTACAACTGTCCCAAAAACAAAACTGAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAGATTTTCCACTAAGCAATTAATTCCCACCCCAACCCACTTGGTTCTTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

mRNA sequence

ATGGTACATACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAACAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

Coding sequence (CDS)

ATGGTACATACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAACAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

Protein sequence

MVHTEKQLSHSPVIFYYITHQPTSSTSPSSKLERSFVLSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAAAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTNFYLFL

Homology

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.8e-25
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPR 138
           RAC +PNP+IDGR+AN N+A +G +PR
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-24
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPRPSPP 142
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-24
Identity = 94/266 (35.34%), Postives = 128/266 (48.12%), Query Frame = 0


Query: 50  FGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 109
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 110 ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPP 169
           A RAC +  P+I+GRRANCN+A++ GR R SP     Q G  P  G+  +A P + G   
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG--PKNGN--RATPPHVG--- 130

Query: 170 PLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPF------------LLKL 229
                         +S + YP+     G+ +Q +Q       PF                
Sbjct: 131 -------------NHSQWYYPS-----GFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQ 190

Query: 230 CIIFHCGIYSNTWRACASKQPLYNP---YFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVY 289
            + +  G Y N + A    QP   P   Y++ +     R    + S        VP Y  
Sbjct: 191 KVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPM------VPFYTV 245

Query: 290 YPPPAAAAAAAAAAQFEGSFSYPPPP 300
           YP   + A       F    S+  PP
Sbjct: 251 YPYHQSQAIGFPQPSFSKPLSFSTPP 245

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 3.4e-23
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 112 RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQG---GVNPYQGSTMQ----AAPSYS 171
           RAC +PNP+IDGR+AN N+A +G    + PR    G   GV     + +Q      P Y 
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYI 149

Query: 172 GVPPPLNQPPLP-PLPPVVYSPYGYPTYTP 194
             PP + QP +  P  PV      Y  YTP
Sbjct: 150 -YPPAIVQPSVVIPAAPVPSLSSPYIEYTP 174

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 5.8e-23
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 112 RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQG---GVNPYQGSTMQ----AAPSYS 171
           RAC +PNP+IDGR+AN N+A +G    + PR    G   GV     + +Q      P Y 
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYI 147

Query: 172 GVPPPLNQPPLP-PLPPVVYSPYGYPTYTP 194
             PP + QP +  P  PV      Y  YTP
Sbjct: 148 -YPPAIVQPSVVIPATPVPSLSSPYLEYTP 172

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: XP_023522103.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 486 bits (1251), Expect = 7.02e-172
Identity = 244/277 (88.09%), Postives = 244/277 (88.09%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIF 220
           PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQ              
Sbjct: 121 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQ-------------- 180

Query: 221 HCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 280
                          QPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA
Sbjct: 181 ---------------QPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 240

Query: 281 AAAAAAAQFEGSFSYPPPPPLIRHRFASTGTNFYLFL 317
           AAA    QFEGSFSYPPPPPLIRHRFASTGTNFYLFL
Sbjct: 241 AAA----QFEGSFSYPPPPPLIRHRFASTGTNFYLFL 244

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: XP_023535016.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480 bits (1235), Expect = 3.71e-169
Identity = 240/272 (88.24%), Postives = 241/272 (88.60%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIF 220
           PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQ              
Sbjct: 121 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQ-------------- 180

Query: 221 HCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 280
                          QPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA
Sbjct: 181 ---------------QPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 240

Query: 281 AAAAAAAQFEGSFSYPPPPPLIRHRFASTGTN 312
           AAAAAAAQFEGSFSYPPPPPLIRHRFAST + 
Sbjct: 241 AAAAAAAQFEGSFSYPPPPPLIRHRFASTDSQ 243

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: KAG7024550.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450 bits (1158), Expect = 1.90e-157
Identity = 232/273 (84.98%), Postives = 235/273 (86.08%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPP-VVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCII 220
           PSYSGVPPPLNQPPLPP PP VVYSPYGYPTYTPDYGYHHQHYQHHQ             
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQ------------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAA 280
                           QP+YNPYFYGYSLQSPRGAFPSPSQSHQPRV VPPYVYYPPPAA
Sbjct: 181 ----------------QPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAA 240

Query: 281 AAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTN 312
           AAAAAA  QFEGSFSY  PPPLIRHRFAST + 
Sbjct: 241 AAAAAA--QFEGSFSY--PPPLIRHRFASTDSQ 240

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449 bits (1154), Expect = 7.46e-157
Identity = 231/273 (84.62%), Postives = 234/273 (85.71%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPP-VVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCII 220
           PSYSGVPPPLNQPPLPP PP VVYSPYGYPTYTPDYGYHHQHYQHHQ             
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQ------------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAA 280
                           QP+YNPYFYGYSLQSPRGAFPSPSQSHQPRV VPPYVYYPPPAA
Sbjct: 181 ----------------QPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAA 239

Query: 281 AAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTN 312
           AAAAA   QFEGSFSY  PPPLIRHRFAST + 
Sbjct: 241 AAAAA---QFEGSFSY--PPPLIRHRFASTDSQ 239

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: XP_022936617.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 448 bits (1153), Expect = 1.10e-156
Identity = 231/273 (84.62%), Postives = 234/273 (85.71%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPP-VVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCII 220
           PSYSGVPPPLNQPPLPP PP VVYSPYGYPTYT DYGYHHQHYQHHQ             
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQ------------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAA 280
                           QP+YNPYFYGYSLQSPRGAFPSPSQSHQPRV VPPYVYYPPPAA
Sbjct: 181 ----------------QPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAA 240

Query: 281 AAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTN 312
           AAAAA   QFEGSFSYP PPPLIRHRFAST + 
Sbjct: 241 AAAAA---QFEGSFSYP-PPPLIRHRFASTDSQ 240

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 5.32e-157
Identity = 231/273 (84.62%), Postives = 234/273 (85.71%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPP-VVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCII 220
           PSYSGVPPPLNQPPLPP PP VVYSPYGYPTYT DYGYHHQHYQHHQ             
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQ------------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAA 280
                           QP+YNPYFYGYSLQSPRGAFPSPSQSHQPRV VPPYVYYPPPAA
Sbjct: 181 ----------------QPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAA 240

Query: 281 AAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTN 312
           AAAAA   QFEGSFSYP PPPLIRHRFAST + 
Sbjct: 241 AAAAA---QFEGSFSYP-PPPLIRHRFASTDSQ 240

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 439 bits (1130), Expect = 1.52e-153
Identity = 225/273 (82.42%), Postives = 230/273 (84.25%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTT TKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIF 220
           PSYSGVPPPLNQPPLPP PPVVYSPYGYPTYTPDYGYH QHYQHHQ              
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYH-QHYQHHQ-------------- 180

Query: 221 HCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 280
                          QP+YNPYFYGYS+QSPRGAFP PSQSHQPRV VPPYVYYPPPAAA
Sbjct: 181 ---------------QPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAA 237

Query: 281 AAAAAAAQFEGSFSYPPPPP-LIRHRFASTGTN 312
           A      Q+EGSFSYPPPPP LIRHRFAST + 
Sbjct: 241 A------QYEGSFSYPPPPPPLIRHRFASTDSQ 237

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.49e-120
Identity = 192/279 (68.82%), Postives = 212/279 (75.99%), Query Frame = 0


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+Y HYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 161 PSYSGVPPPLNQPPLPPLPP----VVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKL 220
           PSYSGVP PLNQPPLPP PP    VVYSPYGYP+Y+PDYGYH Q   + QV QP +  + 
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQ- 180

Query: 221 CIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPS-PSQSHQPRVPVPPYVYYP 280
                                  +PY YGYS+QSPR  F + P QSH  RVP P Y+YYP
Sbjct: 181 -----------------------SPYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYYP 240

Query: 281 PPAAAAAAAAAAQFE--GSFSYPPPPPLIRHRFASTGTN 312
               AAA +  AQFE   SFS  PPPPL+RHRF+ST + 
Sbjct: 241 ----AAAPSPHAQFEPSSSFSNYPPPPLLRHRFSSTDSQ 250

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 339 bits (870), Expect = 1.02e-113
Identity = 190/283 (67.14%), Postives = 207/283 (73.14%), Query Frame = 0


Query: 43  YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 102
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 103 TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQA--A 162
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTMQA   
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 163 PSYSGVPPPLNQPPLPP----LPPVVYSPYGYPTYTPDYGYHHQHYQHH--QVSQPPFLL 222
           PSY GVP PLNQPP+PP     PPVVYSPYGYP Y+PDYGYHH H   +  QV QP    
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ--- 183

Query: 223 KLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQ-PRVPVPP-YV 282
                    +Y  T            PY+YGYS +     FP+PSQSHQ PR+ +PP YV
Sbjct: 184 ---------MYQQT------------PYYYGYSSRGT--TFPNPSQSHQHPRLLLPPSYV 243

Query: 283 YYPPPAAAAAAAAAAQFE-GSFSYPPPPP--LIRHRFASTGTN 312
           YYPPP          QFE  SF+YPP P   +IRHRF+ST + 
Sbjct: 244 YYPPPPPPP------QFEPSSFNYPPQPQPQIIRHRFSSTDSQ 254

[Close]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL
Match: A0A6J1IZ12 (RNA-binding protein 38-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481192 PE=4 SV=1)

HSP 1 Score: 314 bits (805), Expect = 4.36e-103
Identity = 193/352 (54.83%), Postives = 211/352 (59.94%), Query Frame = 0


Query: 4   TEKQLSHSPVIFYYITHQPTSSTSPSSKLE--------RSFVLST--------------- 63
           TEK  SHSPVI   ITHQPTSSTSPSSKLE         SF LS+               
Sbjct: 7   TEKHFSHSPVISDSITHQPTSSTSPSSKLEFAAVGDFLSSFSLSSANNLSNYNHQRLKPC 66

Query: 64  -----------------------MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFE 123
                                  M+YPHYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFE
Sbjct: 67  GSPAVIFDAEEEKLVYDVVSGEGMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFE 126

Query: 124 QFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPR 183
           +FGDILEAVIITDK TSKSKGYGFVTFRD ESA+RAC NPNP+IDGRRANCNIAA+GRPR
Sbjct: 127 EFGDILEAVIITDKITSKSKGYGFVTFRDPESAKRACLNPNPIIDGRRANCNIAALGRPR 186

Query: 184 PSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGY 243
           PSPPRGR Q GVN    S +Q           LN PPLPP PPVVYSPYGYP+Y  DY Y
Sbjct: 187 PSPPRGRHQSGVNVQSASPLQ-----------LNLPPLPPPPPVVYSPYGYPSYNSDYNY 246

Query: 244 HHQHYQHHQVSQPPFLLKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPS 303
           H Q   + Q+  P F  +                        +PYFYGYS       FP 
Sbjct: 247 HQQTVYNPQLRPPQFYQQ------------------------SPYFYGYSR-----TFPI 306

Query: 304 PSQSHQPRVPVPPYVYYP--PPAAAAAAAAAAQFEGSFSYPPPPPLIRHRFA 307
           PS SHQ R+P P Y+YYP  PPA         QFE SF+YP   PL+ HRF+
Sbjct: 307 PSPSHQHRLP-PSYMYYPTLPPA---------QFEPSFNYP-QAPLVSHRFS 307

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.7e-57
Identity = 139/287 (48.43%), Postives = 178/287 (62.02%), Query Frame = 0


Query: 45  HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 104
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 105 RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 164
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 165 SGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCG 224
           +G+  PL   P    P ++Y  YGY TY PD   +HQ   + Q+ Q  +  +   ++  G
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGG 185

Query: 225 IYSNTWRACASKQPLYNPYFYGYSLQSPRGAFP---------SPSQSHQPRVPVPPYVYY 284
             S +  + A+  P  +PY+YGYSLQ+PR  +          +P Q H  R   P ++ Y
Sbjct: 186 ATSPS-SSGATIMP--SPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 245

Query: 285 PPPAAAAAAAAAAQFEGSFSYPPPPPLIRHRFASTGT----NFYLFL 318
           P  ++ A                 PPL     +STGT    +F+ F+
Sbjct: 246 PSNSSFA-----------------PPLQGVLSSSTGTYLINSFFFFI 265

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 219.5 bits (558), Expect = 3.7e-57
Identity = 130/247 (52.63%), Postives = 165/247 (66.80%), Query Frame = 0


Query: 45  HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 104
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 105 RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 164
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 165 SGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCG 224
           +G+  PL   P    P ++Y  YGY TY PD   +HQ   + Q+ Q  +  +   ++  G
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGG 185

Query: 225 IYSNTWRACASKQPLYNPYFYGYSLQSPRGAFP---------SPSQSHQPRVPVPPYVYY 282
             S +  + A+  P  +PY+YGYSLQ+PR  +          +P Q H  R   P ++ Y
Sbjct: 186 ATSPS-SSGATIMP--SPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 242

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 199.1 bits (505), Expect = 5.2e-51
Identity = 124/228 (54.39%), Postives = 148/228 (64.91%), Query Frame = 0


Query: 38  LSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSK 97
           +S  SY  YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSK
Sbjct: 1   MSNTSY--YRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSK 60

Query: 98  GYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGG-VNPYQGST 157
           GYGFVTFRD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQGG  + YQG  
Sbjct: 61  GYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG- 120

Query: 158 MQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKL 217
                SY+G+  P+ Q     L   +Y  YGY TY  +YGYH   Y + Q+ Q  +    
Sbjct: 121 --GQSSYTGMAAPVQQAAAAQL---MYPSYGY-TYNSEYGYHQALY-NAQLQQAQY---- 180

Query: 218 CIIFHCGIYSNTWRACASKQPLY-NPYFYGYSLQSPRGAFPSPSQSHQ 264
              +   +Y        S   +  +PY+Y   LQ+P    P P   HQ
Sbjct: 181 ---YQQQMYGGGGATSPSSSNIMPSPYYY---LQAPS---PRPYLHHQ 205

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.2 bits (409), Expect = 7.1e-40
Identity = 90/169 (53.25%), Postives = 112/169 (66.27%), Query Frame = 0


Query: 38  LSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSK 97
           + +  + +  S FGDTTFTKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SK
Sbjct: 6   IPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSK 65

Query: 98  GYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRP---------SPPRGRGQGG 157
           GYGFVTFRD E+ARRAC +P P+IDGRRANCN+A++GR RP         +P R R    
Sbjct: 66  GYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPP-- 125

Query: 158 VNPYQGSTMQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGY 198
            +PY GS       + G   P +QPP       V  PYG   Y PDY Y
Sbjct: 126 -SPYVGSVQSPRGLHFG-SHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY 170

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.2 bits (409), Expect = 7.1e-40
Identity = 90/169 (53.25%), Postives = 112/169 (66.27%), Query Frame = 0


Query: 38  LSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSK 97
           + +  + +  S FGDTTFTKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SK
Sbjct: 6   IPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSK 65

Query: 98  GYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRP---------SPPRGRGQGG 157
           GYGFVTFRD E+ARRAC +P P+IDGRRANCN+A++GR RP         +P R R    
Sbjct: 66  GYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPP-- 125

Query: 158 VNPYQGSTMQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGY 198
            +PY GS       + G   P +QPP       V  PYG   Y PDY Y
Sbjct: 126 -SPYVGSVQSPRGLHFG-SHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY 170

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g04390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZJX4	4.8e-25	62.07	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	1.1e-24	59.34	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9M1S3	1.8e-24	35.34	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	3.4e-23	47.33	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	5.8e-23	47.33	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]

BLAST of Cp4.1LG06g04390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522103.1	7.02e-172	88.09	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_023535016.1	3.71e-169	88.24	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
KAG7024550.1	1.90e-157	84.98	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591668.1	7.46e-157	84.62	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936617.1	1.10e-156	84.62	RNA-binding protein 38-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG06g04390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8X9	5.32e-157	84.62	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1IJV9	1.52e-153	82.42	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1DIJ5	1.49e-120	68.82	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A0A0LGV2	1.02e-113	67.14	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1IZ12	4.36e-103	54.83	RNA-binding protein 38-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114811...	[more]

BLAST of Cp4.1LG06g04390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.2	1.7e-57	48.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	3.7e-57	52.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	5.2e-51	54.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	7.1e-40	53.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	7.1e-40	53.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..129 e-value: 1.6E-24 score: 97.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 58..116 e-value: 7.8E-17 score: 60.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 56..133 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..150 e-value: 2.5E-26 score: 94.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..167
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 41..289
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 56..131 e-value: 2.57325E-44 score: 144.295
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 41..289
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 43..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g04390.1	Cp4.1LG06g04390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding