Cp4.1LG06g03770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g03770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationCp4.1LG06: 2829924 .. 2830394 (-)
RNA-Seq ExpressionCp4.1LG06g03770
SyntenyCp4.1LG06g03770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTATGCGAGGCTCTCCCCTCGTCCATTTTTGCTTCTGTTTATTCAATTTTTTGAATCGAGTAACATTTGCTTCTTACTTTCGGGTTTGTGTTCTCTTGATTGTGTAATGCAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTAAGTTCATCTTTCCCTCGCCTACGCATACATACACAAACTCTCATAAACTAGCAGATCTTGAAATACAATGGTATCTTGGTCAGGTCTCTATGTAAATTATGA

mRNA sequence

ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTCTCTATGTAAATTATGA

Coding sequence (CDS)

ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTCTCTATGTAAATTATGA

Protein sequence

MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWSLCKL
Homology
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-10
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGS++L +LK  ++    +  +F S    S ++    IR  + +    ++L PPD+ RLA
Sbjct: 1  MGSRALLLLKATTA----ETLLFTSKSTFSKAL----IRNSTRSFSTRSALLPPDLPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 86
          ETARISLTP EVEE APKI QV+DW
Sbjct: 61 ETARISLTPHEVEEFAPKIRQVIDW 77

BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-10
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGS+++ +LKG S          ++    SP+ S  R    +TA G  +SL+PPDV RLA
Sbjct: 1  MGSRAVLLLKGPSP-PKHSILFLLNHKKISPAPSIRRFTTKATANG--SSLEPPDVARLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 86
          ETARISLTP +VEE  PKI QV+DW
Sbjct: 61 ETARISLTPQQVEEFGPKIRQVIDW 82

BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-09
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRI-FISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRL 60
          MGS++L +LK A     LK +I  ++    +P+   +  R+ S      +SLQPPDV RL
Sbjct: 1  MGSRALLLLKVA---LPLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61 AETARISLTPGEVEELAPKIGQVVDW 86
          AETARISL   EVEE APKI QV+DW
Sbjct: 61 AETARISLNQNEVEEFAPKIRQVIDW 83

BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: F4JV80 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GATC PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 32 SVSNIRIRKCSTALGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDW 86
          S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V+DW
Sbjct: 42 SRKNHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDW 95

BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-07
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 18 LKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLAETARISLTPGEVEELAP 77
          L RR  +SS   SP      I   + A G   +L+PPD+ RLA  ARISL+P E EE AP
Sbjct: 29 LLRRRSLSS---SPPYVTPGIPAAAAAAG-SGALEPPDLPRLANAARISLSPEEAEEFAP 88

Query: 78 KIGQVVDW 86
          KI QVVDW
Sbjct: 89 KIRQVVDW 92

BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_023534971.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (414), Expect = 8.53e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA
Sbjct: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          ETARISLTPGEVEELAPKIGQVVDW
Sbjct: 61 ETARISLTPGEVEELAPKIGQVVDW 85

BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_022975686.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 157 bits (396), Expect = 4.70e-47
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSKSLPVLKGASSFSSLKRRIFISSGLH PSVSNIRIRKC TA GIMASLQPPDVLRLA
Sbjct: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          ETARISLTPGEVEELAPKIGQVVDW
Sbjct: 61 ETARISLTPGEVEELAPKIGQVVDW 85

BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: KAG7024605.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (383), Expect = 2.73e-45
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTA GIMASLQPPDVLRLA
Sbjct: 1  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQV 82
          ETARISLTPGEVEELAPKIGQV
Sbjct: 61 ETARISLTPGEVEELAPKIGQV 82

BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 2.82e-34
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STA G++ASLQPPDV RLA
Sbjct: 1  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          +TARISLTP +VEE APKI QVVDW
Sbjct: 61 QTARISLTPTQVEEFAPKITQVVDW 85

BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 124 bits (310), Expect = 5.67e-34
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LP+LKGASS  SLK RIFIS+GLHS   S IRIRKCSTA  I+ASLQPPDV RLA
Sbjct: 1  MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          ETARISLTP +VEE APKI QVVDW
Sbjct: 61 ETARISLTPTQVEEFAPKIRQVVDW 85

BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A6J1IEW2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111475576 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 2.27e-47
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSKSLPVLKGASSFSSLKRRIFISSGLH PSVSNIRIRKC TA GIMASLQPPDVLRLA
Sbjct: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          ETARISLTPGEVEELAPKIGQVVDW
Sbjct: 61 ETARISLTPGEVEELAPKIGQVVDW 85

BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.36e-34
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STA G++ASLQPPDV RLA
Sbjct: 1  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          +TARISLTP +VEE APKI QVVDW
Sbjct: 61 QTARISLTPTQVEEFAPKITQVVDW 85

BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.36e-34
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STA G++ASLQPPDV RLA
Sbjct: 1  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          +TARISLTP +VEE APKI QVVDW
Sbjct: 61 QTARISLTPTQVEEFAPKITQVVDW 85

BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 6.39e-33
Identity = 64/85 (75.29%), Postives = 70/85 (82.35%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGSK+LP+LKGASSF SLKR+IFIS+  HS  VSNI IR  STA GI ASLQPPDV RLA
Sbjct: 1  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          +TARISLTP + EE APKI QVVDW
Sbjct: 61 QTARISLTPTQAEEFAPKITQVVDW 85

BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.21e-30
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 0

Query: 1  MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLA 60
          MGS +L +LKGASS  SL  +IFIS+ L+S  VS+IRIRKCSTA GI ASLQPPDV RLA
Sbjct: 1  MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61 ETARISLTPGEVEELAPKIGQVVDW 85
          ETARISL P EVEE APKI QVVDW
Sbjct: 61 ETARISLNPNEVEEFAPKIRQVVDW 85

BLAST of Cp4.1LG06g03770 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 32 SVSNIRIRKCSTALGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDW 86
          S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V+DW
Sbjct: 42 SRKNHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDW 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
D7STK23.6e-1045.88Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9INH04.7e-1049.41Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
B9RRX26.8e-0948.84Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
F4JV801.7e-0753.70Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ar... [more]
A2XK578.3e-0751.47Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Match NameE-valueIdentityDescription
XP_023534971.18.53e-50100.00glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ... [more]
XP_022975686.14.70e-4796.47glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ... [more]
KAG7024605.12.73e-4597.56Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_008466091.12.82e-3476.47PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_038897282.15.67e-3478.82glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
Match NameE-valueIdentityDescription
A0A6J1IEW22.27e-4796.47Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A5A7T6R51.36e-3476.47Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE81.36e-3476.47Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A0A0LJU56.39e-3375.29Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1FM331.21e-3074.12Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
Match NameE-valueIdentityDescription
AT4G32915.11.2e-0853.70FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g03770.1Cp4.1LG06g03770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity