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Cp4.1LG06g03770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTATGCGAGGCTCTCCCCTCGTCCATTTTTGCTTCTGTTTATTCAATTTTTTGAATCGAGTAACATTTGCTTCTTACTTTCGGGTTTGTGTTCTCTTGATTGTGTAATGCAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTAAGTTCATCTTTCCCTCGCCTACGCATACATACACAAACTCTCATAAACTAGCAGATCTTGAAATACAATGGTATCTTGGTCAGGTCTCTATGTAAATTATGA ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTCTCTATGTAAATTATGA ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCGACTGCTTTAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTAGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTCTCTATGTAAATTATGA MGSKSLPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTALGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWSLCKL Homology
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.6e-10 Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 4.7e-10 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-09 Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: F4JV80 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GATC PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 8.3e-07 Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_023534971.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164 bits (414), Expect = 8.53e-50 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_022975686.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 157 bits (396), Expect = 4.70e-47 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: KAG7024605.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 152 bits (383), Expect = 2.73e-45 Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa]) HSP 1 Score: 124 bits (312), Expect = 2.82e-34 Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]) HSP 1 Score: 124 bits (310), Expect = 5.67e-34 Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A6J1IEW2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111475576 PE=3 SV=1) HSP 1 Score: 157 bits (396), Expect = 2.27e-47 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1) HSP 1 Score: 124 bits (312), Expect = 1.36e-34 Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1) HSP 1 Score: 124 bits (312), Expect = 1.36e-34 Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1) HSP 1 Score: 120 bits (301), Expect = 6.39e-33 Identity = 64/85 (75.29%), Postives = 70/85 (82.35%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1) HSP 1 Score: 114 bits (286), Expect = 1.21e-30 Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 0
BLAST of Cp4.1LG06g03770 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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