Cp4.1LG06g03200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g03200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 1767965 .. 1769741 (-)
RNA-Seq ExpressionCp4.1LG06g03200
SyntenyCp4.1LG06g03200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAGCTCATGATTTCGAAGCGCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGGTTCTCGAAATGCCTCACTGTGACAGAGGATCGAAGAAGCTAAACCCAACGATTTTACTCCCTTTGTACATATACATCATTTGCTGTGGAAGGAGAATTTCGGACATTTTTATTTTGAATTTGGACCAAACGAAAAGAAATATAAAAAGATCATAATTCGAAGATTAATTTCAAGACGAAGTAATCTGTAACTGCCATCAATTTGCAATCGGTTCATAACGCCGTTGGATGAGAATTACGTCCCGTTCAAATCCGTCGTGTGCAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGGTATTTTTTTTATTTTATTTTCCATCCGTATCAGTTTATTCATTTATTATTTATTTTGGTGCAGAGTGCAGGACGTGCCGCCTGGTGATTATTATGCCGTCATGGTTCTTTGGTTGAGTTTCTTTGAATTCTGAGATGAAATCTGAAACCCATGAAACTTTGACCTATGACTTTCTTGCCGGTTGAAGATGAAGATTAGACGTTAACTGTGACCGAACTTACTGGGCCCGGGTCGGGCCCATTGGACCTTATTACTCTGAGGGGACTTTTAGAAATAAATAAATTAATTAGGATAAAATATTATTATTAAAAGAAAGTTGATGGTGATTAAGGGAAGCTCGAAGAAGGAAAGCCTGAATAAATTTGACAGTACAGAGATAGGGTGGAAAATAATTAAGCGTGGAGGTATAAAGAGAAACTAACCAAAGGGGAAACCATAATAAGGAATTTTTTTTAAAAAAATATAAATAATAGGAATTAAAAAAAGGAAAAAATGGGACATTTTGTGCTGGACATGAGTGTGATGGTTGAACGGACAAAATAGAAATGGTGGGGTACACTTAATATGGGAAATGAGTGGGACCCACCCAACTATAAGGCGGTGCCCCCAAGATTCTTGTGACCCTAATGGGAGCAACTTTGTGGATCTGTTCAAAATTTTATTAATTAAAAAAATATTCTATTTATTTTCATTTTAAGAGAGAATTTTGTAGATACATATATTTTATATATATATTTATGATTTGCTGTTGGGAGTTGGGTTTGGTAAAAATAACATAAACCCAATGAACGTGGAGTTAATACGAGGACATTGAAGGTGAGGTTTAGGATTGTTTGAGAAATGCGAGATTACACACGTTAGTTTGAATGAGGAACGGAAGTATTCTTTATAACGATGTAGAAAAAACTTCTCCTTAATAGATATGATACTGACTACGTAAAAGAGCAGGCGGACAATAGTTGCTAGTGGTGGACTTTGACGGTTACATTTGGTATCAGAACCAGACACGGGGCTGTGTGCGAGTGAGGACATTGAGTCCCTAGGGTGTGGATTGTGAGAATCCACGTTGATTAGAGAGGGGAATAATAGATCCGTGGAGGTGGATTATGAGATCTCATATCGATTAAAGAGGGGGAATAAAGCGTCCTTAGAGGTGAATTGTGAGATCACAATGAAGCATTTATGTGTAAAATTGTGAGGCTAACTGTGATACTGTAATCGGTCAAAGCGGGCAATATTTACTAGTAGTGGGGCTGGACCCCCGAAGAAATGAATTATGAGATCCTACGTTCTTATAATACTGTAGTATCACGGTAAAAAAAATGTTAGGATTA

mRNA sequence

ATGACTCATGATTTCGAAGCGCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGAGTGCAGGACGTGCCGCCTGGTGATTATTATGCCGTCATGGTTCTTTGGTTGAGTTTCTTTGAATTCTGAGATGAAATCTGAAACCCATGAAACTTTGACCTATGACTTTCTTGCCGGTTGAAGATGAAGATTAGACGTTAACTGTGACCGAACTTACTGGGCCCGGGTCGGGCCCATTGGACCTTATTACTCTGAGGGGACTTTTAGAAATAAATAAATTAATTAGGATAAAATATTATTATTAAAAGAAAGTTGATGGTGATTAAGGGAAGCTCGAAGAAGGAAAGCCTGAATAAATTTGACAGTACAGAGATAGGGTGGAAAATAATTAAGCGTGGAGGTATAAAGAGAAACTAACCAAAGGGGAAACCATAATAAGGAATTTTTTTTAAAAAAATATAAATAATAGGAATTAAAAAAAGGAAAAAATGGGACATTTTGTGCTGGACATGAGTGTGATGGTTGAACGGACAAAATAGAAATGGTGGGGTACACTTAATATGGGAAATGAGTGGGACCCACCCAACTATAAGGCGGTGCCCCCAAGATTCTTGTGACCCTAATGGGAGCAACTTTGTGGATCTGTTCAAAATTTTATTAATTAAAAAAATATTCTATTTATTTTCATTTTAAGAGAGAATTTTGTAGATACATATATTTTATATATATATTTATGATTTGCTGTTGGGAGTTGGGTTTGGTAAAAATAACATAAACCCAATGAACGTGGAGTTAATACGAGGACATTGAAGGTGAGGTTTAGGATTGTTTGAGAAATGCGAGATTACACACGTTAGTTTGAATGAGGAACGGAAGTATTCTTTATAACGATGTAGAAAAAACTTCTCCTTAATAGATATGATACTGACTACGTAAAAGAGCAGGCGGACAATAGTTGCTAGTGGTGGACTTTGACGGTTACATTTGGTATCAGAACCAGACACGGGGCTGTGTGCGAGTGAGGACATTGAGTCCCTAGGGTGTGGATTGTGAGAATCCACGTTGATTAGAGAGGGGAATAATAGATCCGTGGAGGTGGATTATGAGATCTCATATCGATTAAAGAGGGGGAATAAAGCGTCCTTAGAGGTGAATTGTGAGATCACAATGAAGCATTTATGTGTAAAATTGTGAGGCTAACTGTGATACTGTAATCGGTCAAAGCGGGCAATATTTACTAGTAGTGGGGCTGGACCCCCGAAGAAATGAATTATGAGATCCTACGTTCTTATAATACTGTAGTATCACGGTAAAAAAAATGTTAGGATTA

Coding sequence (CDS)

ATGACTCATGATTTCGAAGCGCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGAGTGCAGGACGTGCCGCCTGGTGA

Protein sequence

MTHDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGRAAW
Homology
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BLAST of Cp4.1LG06g03200 vs. NCBI nr
Match: KAG6591554.1 (hypothetical protein SDJN03_13900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (300), Expect = 9.45e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 3   HDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGRA 62
           HDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGRA
Sbjct: 185 HDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGRA 244

Query: 63  AW 64
           AW
Sbjct: 245 AW 246

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g03200 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591554.19.45e-32100.00hypothetical protein SDJN03_13900, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG06g03200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g03200.1Cp4.1LG06g03200.1mRNA