Cp4.1LG06g03090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCTGAAGAAGCACCACCTATAAACCCCACTTCTCTCTCCCTCTCTCTGTCTAATCTTAATTCCCAATATTTATACTCTCCTTTACTCTCTCCGCCACCCTCTCTCCCTCTCTCTCTCTCTCTATCAATCTTTTCACCCCATCTCTCTCTCTCTCTCCATTCATCTCTTTTGATTCCTTTTTCTCCCCTGTTTCCCCTTTTCTCTGCAGCGATGATGGTGGAGGACGAATGGCTTACGGCCGCCATGGCCGAGGACAGCGTGGTGGCTGACTTATTGGTGCGGTTGAAGCAGTCGCAGGCTGCGTCGCCTTCCAAATCTCCTCGTCCCATGAAGCTGCCGTTTAATTGGGGGGTTAGGCAACCGAGGTCCAGGACGGCGGCAGCCATGGCTGCGGTGGTTGTGAGATGTGGCGATGTTGTCTTGCAGAGGAATAATAAGGATGTTGACTCCACCAGATGCAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGTGCTTCTCCTTCCGCTACGCTTGATGGTTATGAAGCGTCTAGCCGTCACGCTACTCTCTTGCACGTTGCTTCCAGATTTAAGGTTCTCGACTCTTTCTCTCCTCTCGTCTCATTCTCTGTTTCGTCTGTTTCGGATTTTTGTAGTTTCGTCTCTTATATTGGCTGTGTGTCCGTTTTTTTTTCTCCGCGATTTCTCAAATCTTAACGCCGGCGTTCTTAATTGCGTTTTTTCTCGGCGGTGGTGTCGGCTGCGGATTTCAGGCGGTCGGTGGCACCGTGGATTCTCAGATAGAACATTCTTATCTCGAGAAGCCTCGTATATTGAATCGTCACCATTTCTCCATTTGTTTTTCCAAGAATCTGATTCCGTATCGTGAAATCTCTTCCGATGTTCTCATTTCTTCATCCGCTTAGCGAAACAGAGTTCCTCTCTCAGAAGTCAGAACTCACACAACCGCAAATCTCTCAATTCCATAACCGCTCTGTACTTCACCAAACAGTTTCATCTTCTCTCCGTCAATGGCGGACAATCCTAACAAATCACCGACGAGAAACTGCTCTTTAATTCATCAAATCCCCGGTATACTCCTAGATTCTCCAAAATTTTCACGTTCACTGTTAGAGAATGAACACTGGTTGAAAATACTTCGCGTTTTCTTCTCGCCTCTTTTCACCTCGTCTACGATTCCAAATCCCTTACTTCTCCAAATTGACCAAAACGCCCTTCAAATCCCTCGCTAGATTCCAACGCTTTCCAAATCGTACCGCCGAGTCGCTGTTTCGTCACGCACGAGATTTTTCCAACACAAACTCTCTTCCATCGCCGTCGGTTTACCTCGAAACTTTCCTACGGCCATTTTCCTCTCATTTCCCCCTCTTTTTGACGCGTAAATCGCGAGGGTATTCCGGTCACATGCAAAAATTCAGAGCCGGTCTGGTCGAACCGGGGCCCTGATACGACCATCGACGATGCTACAAAGTGAGGGCCCAATTCGGATCAGGTCGCAAGAGATAGGTCTGCGTTAGGTTTGATGCAGACTTGGAGTAATTATCAGGTGTGGCGATGGTACATGGTTGGTTCCTGTGTTTGCTTTCTGAAATATTTTCAATAAATAAATAAATAAATGAAGAATTGCCTGCAAGTCGTTGGGCTGAGAAGAGGAAAAGGAAGATCCACGTGACCATAACAGGAAATCGTTTGGGTGTGGTCACGGTCACATTCTTAAAGTGACCACGTGGACGTCATGACGTGGCGGCCCTGTTACTGTTCAAAATTTGTTGCTATTTTGCTTATCATGTAATCCTGATTCATTCTTGTTCATGTTCTGTTTCACCCTATTGATTCTTATTAATATGTTTTGGGATTAGTTTTTCAGGGTGCTGTTGCTAATGAGTCGCCGGCGTGTACCACTACAAAGAGATTGAGACGAAAGAAGGTAATTCTTGTAGGGAAAAGAAAATCAATCATGCATTTGTTTATTGCTGACTTTAATTCAGTTGTTGGCTTGCCTTGTTCTTGAAGAATGAATGCCTTGTTCTTGAAGAATGTATTCTCTTCTTTGTTTGTATTCCAGACATTTGCTGAGCTTAAGGAAGAGGAAAACACGCTTTTGAAGGAGAAACTTCATCTAAAAATGGTATGATCTTCGTCTAAAAAGTTTGATCAAGCTTCATATATATATATGTATATATATACACAACTCTTTCCATTTTGGGTTTGCACATTTGTAATGATATCATGAGTGCTTTAGGGTGTCTCCAAGCTATATGTTTTCTTATACAATTACAGTCCGTCTTTGCTCAATGGATACAAAATACCCATGCTTTAGTACCTAGTATAACGCCCCTGGTGCAATAACAGACACTAGTTTGACTTGGGGGTGGTGATTTAATGGCCGTGGGCGGCAAAGTTGCTTTGTTACCTACGTTGGGAATCGCAGATTTTCTTGGTACATCATATGCATGCATTTACGATTCATGTACGATATTGATACTCCTGAAAGTTGTTCTATTTTCTCATAGCTCGTGTTTGATACTAGATAAAGAAAATCTTGGTTTTCGTTTTCCTTGTGATGGGCCGGGAAGAGAGGGTACATGTCAAGTATCTGATTGGGCCTATTTTGGACGTAGAATTCAATTTGAAATGGGGTCAGATTAGGGGAAGATGCCTTTTATTTATTGTCCGCACTATCCTGTTTTTGATGAGCTTACTTTATGAACAGGAACTGGCCACTCTACAGGCAAGCTTCGAAGAACAAAGAGCCAAGAATGAGAGTTTGAAGAAAATGAAGGTAACTCTGCTTTCTTCTTCCATGAATGCCTTTGTACAGTTACAAAAAGATTGACAGAAAAAGGGTTTCAAAACCAAGATTCTCCACTTGCCCTTGACTCAAATCCATAATTTAGTAAACAATCTTACATTATGCACAGGTTGATTTGAACTTGAAATACCCAGAGAAATTCAGTACAAACTCCAATATGATGCATGAGGAATCTTCATCAACACTTACCCATCAAAGGGAAAGCTCTAATAACATTGAAACAAGTCATCCTACATTACCATTCACTGGATCAGGTTCTTCCGAGGCTCAATCACAAAAGAAGAGCAAATCAACCGAAGAAGACTCTGTCTTTTTACTACCAGATTTGAATATGACACCCTCAGAGGATTATTGACTAAGGTGAAAATACATTGACTCTCTCTTTCTCTCTCTCTCTCTAATATGATAATGGTTAAAGGATTATGTGGGATTAAACCTGGCAGTCACTGGTAAGGTCATGAGCCCTATGACCCTACAACTTGGTGATGGCAAAGAAAGTTTGCCGTCTTGTAGTGTAGGCCCAACCAACCAGACTTTTATTAGCTCTTCAGGCTGTAATCCTGTGGGTAAAACCAATTGTTGAATCCCTCTAGAATGGTGTAGGGTTTGATTCATTCGTTGTAGCGTTTATTATAATAGGTACATAATCAATGAATTTGTTTGTCATCATGACTTTGATCTTAATATTTCTTTTTACCGCGCCTTCCTTCCTTTTGTTAATGCGTTCTTACTCATGATGTTCATTCAAAAGTGCCATAATGGGTAGCAGCGGCATAGTTTGATTACAATAAGTGTTGAATCACAGCTAGTTTGGTTCTAGCA AACCTGAAGAAGCACCACCTATAAACCCCACTTCTCTCTCCCTCTCTCTGTCTAATCTTAATTCCCAATATTTATACTCTCCTTTACTCTCTCCGCCACCCTCTCTCCCTCTCTCTCTCTCTCTATCAATCTTTTCACCCCATCTCTCTCTCTCTCTCCATTCATCTCTTTTGATTCCTTTTTCTCCCCTGTTTCCCCTTTTCTCTGCAGCGATGATGGTGGAGGACGAATGGCTTACGGCCGCCATGGCCGAGGACAGCGTGGTGGCTGACTTATTGGTGCGGTTGAAGCAGTCGCAGGCTGCGTCGCCTTCCAAATCTCCTCGTCCCATGAAGCTGCCGTTTAATTGGGGGGTTAGGCAACCGAGGTCCAGGACGGCGGCAGCCATGGCTGCGGTGGTTGTGAGATGTGGCGATGTTGTCTTGCAGAGGAATAATAAGGATGTTGACTCCACCAGATGCAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGTGCTTCTCCTTCCGCTACGCTTGATGGTTATGAAGCGTCTAGCCGTCACGCTACTCTCTTGCACGTTGCTTCCAGATTTAAGGGTGCTGTTGCTAATGAGTCGCCGGCGTGTACCACTACAAAGAGATTGAGACGAAAGAAGACATTTGCTGAGCTTAAGGAAGAGGAAAACACGCTTTTGAAGGAGAAACTTCATCTAAAAATGGAACTGGCCACTCTACAGGCAAGCTTCGAAGAACAAAGAGCCAAGAATGAGAGTTTGAAGAAAATGAAGGTTGATTTGAACTTGAAATACCCAGAGAAATTCAGTACAAACTCCAATATGATGCATGAGGAATCTTCATCAACACTTACCCATCAAAGGGAAAGCTCTAATAACATTGAAACAAGTCATCCTACATTACCATTCACTGGATCAGGTTCTTCCGAGGCTCAATCACAAAAGAAGAGCAAATCAACCGAAGAAGACTCTGTCTTTTTACTACCAGATTTGAATATGACACCCTCAGAGGATTATTGACTAAGGTGAAAATACATTGACTCTCTCTTTCTCTCTCTCTCTCTAATATGATAATGGTTAAAGGATTATGTGGGATTAAACCTGGCAGTCACTGGTAAGGTCATGAGCCCTATGACCCTACAACTTGGTGATGGCAAAGAAAGTTTGCCGTCTTGTAGTGTAGGCCCAACCAACCAGACTTTTATTAGCTCTTCAGGCTGTAATCCTGTGGGTAAAACCAATTGTTGAATCCCTCTAGAATGGTGTAGGGTTTGATTCATTCGTTGTAGCGTTTATTATAATAGGTACATAATCAATGAATTTGTTTGTCATCATGACTTTGATCTTAATATTTCTTTTTACCGCGCCTTCCTTCCTTTTGTTAATGCGTTCTTACTCATGATGTTCATTCAAAAGTGCCATAATGGGTAGCAGCGGCATAGTTTGATTACAATAAGTGTTGAATCACAGCTAGTTTGGTTCTAGCA ATGATGGTGGAGGACGAATGGCTTACGGCCGCCATGGCCGAGGACAGCGTGGTGGCTGACTTATTGGTGCGGTTGAAGCAGTCGCAGGCTGCGTCGCCTTCCAAATCTCCTCGTCCCATGAAGCTGCCGTTTAATTGGGGGGTTAGGCAACCGAGGTCCAGGACGGCGGCAGCCATGGCTGCGGTGGTTGTGAGATGTGGCGATGTTGTCTTGCAGAGGAATAATAAGGATGTTGACTCCACCAGATGCAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGTGCTTCTCCTTCCGCTACGCTTGATGGTTATGAAGCGTCTAGCCGTCACGCTACTCTCTTGCACGTTGCTTCCAGATTTAAGGGTGCTGTTGCTAATGAGTCGCCGGCGTGTACCACTACAAAGAGATTGAGACGAAAGAAGACATTTGCTGAGCTTAAGGAAGAGGAAAACACGCTTTTGAAGGAGAAACTTCATCTAAAAATGGAACTGGCCACTCTACAGGCAAGCTTCGAAGAACAAAGAGCCAAGAATGAGAGTTTGAAGAAAATGAAGGTTGATTTGAACTTGAAATACCCAGAGAAATTCAGTACAAACTCCAATATGATGCATGAGGAATCTTCATCAACACTTACCCATCAAAGGGAAAGCTCTAATAACATTGAAACAAGTCATCCTACATTACCATTCACTGGATCAGGTTCTTCCGAGGCTCAATCACAAAAGAAGAGCAAATCAACCGAAGAAGACTCTGTCTTTTTACTACCAGATTTGAATATGACACCCTCAGAGGATTATTGA MMVEDEWLTAAMAEDSVVADLLVRLKQSQAASPSKSPRPMKLPFNWGVRQPRSRTAAAMAAVVVRCGDVVLQRNNKDVDSTRCSPTTPLSWSGGASPSATLDGYEASSRHATLLHVASRFKGAVANESPACTTTKRLRRKKTFAELKEEENTLLKEKLHLKMELATLQASFEEQRAKNESLKKMKVDLNLKYPEKFSTNSNMMHEESSSTLTHQRESSNNIETSHPTLPFTGSGSSEAQSQKKSKSTEEDSVFLLPDLNMTPSEDY Homology
BLAST of Cp4.1LG06g03090 vs. NCBI nr
Match: XP_023536611.1 (uncharacterized protein LOC111797733 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 500 bits (1288), Expect = 4.73e-178 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. NCBI nr
Match: XP_022937356.1 (uncharacterized protein LOC111443668 [Cucurbita moschata]) HSP 1 Score: 484 bits (1246), Expect = 1.19e-171 Identity = 258/266 (96.99%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. NCBI nr
Match: XP_022976190.1 (uncharacterized protein LOC111476653 [Cucurbita maxima]) HSP 1 Score: 483 bits (1244), Expect = 2.32e-171 Identity = 260/266 (97.74%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. NCBI nr
Match: KAG7024435.1 (hypothetical protein SDJN02_13250, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 442 bits (1138), Expect = 1.60e-155 Identity = 241/266 (90.60%), Postives = 243/266 (91.35%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. NCBI nr
Match: KAG6591549.1 (Trafficking protein particle complex II-specific subunit 120-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 433 bits (1113), Expect = 8.26e-138 Identity = 229/234 (97.86%), Postives = 232/234 (99.15%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. ExPASy TrEMBL
Match: A0A6J1FA47 (uncharacterized protein LOC111443668 OS=Cucurbita moschata OX=3662 GN=LOC111443668 PE=4 SV=1) HSP 1 Score: 484 bits (1246), Expect = 5.77e-172 Identity = 258/266 (96.99%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. ExPASy TrEMBL
Match: A0A6J1IIT2 (uncharacterized protein LOC111476653 OS=Cucurbita maxima OX=3661 GN=LOC111476653 PE=4 SV=1) HSP 1 Score: 483 bits (1244), Expect = 1.12e-171 Identity = 260/266 (97.74%), Postives = 262/266 (98.50%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. ExPASy TrEMBL
Match: A0A5A7VE69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001010 PE=4 SV=1) HSP 1 Score: 368 bits (944), Expect = 6.53e-126 Identity = 210/276 (76.09%), Postives = 229/276 (82.97%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. ExPASy TrEMBL
Match: A0A1S4DZ38 (uncharacterized protein LOC103493773 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493773 PE=4 SV=1) HSP 1 Score: 368 bits (944), Expect = 6.53e-126 Identity = 210/276 (76.09%), Postives = 229/276 (82.97%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. ExPASy TrEMBL
Match: A0A0A0L0G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652680 PE=4 SV=1) HSP 1 Score: 354 bits (909), Expect = 9.37e-121 Identity = 204/265 (76.98%), Postives = 219/265 (82.64%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. TAIR 10
Match: AT4G32030.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 127.9 bits (320), Expect = 1.2e-29 Identity = 104/270 (38.52%), Postives = 145/270 (53.70%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. TAIR 10
Match: AT1G15800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 107.1 bits (266), Expect = 2.3e-23 Identity = 75/194 (38.66%), Postives = 111/194 (57.22%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. TAIR 10
Match: AT1G80610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). ) HSP 1 Score: 98.6 bits (244), Expect = 8.0e-21 Identity = 78/203 (38.42%), Postives = 101/203 (49.75%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. TAIR 10
Match: AT4G32030.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19 Identity = 70/166 (42.17%), Postives = 95/166 (57.23%), Query Frame = 0
BLAST of Cp4.1LG06g03090 vs. TAIR 10
Match: AT5G25210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12 Identity = 57/170 (33.53%), Postives = 80/170 (47.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|