Cp4.1LG06g02900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g02900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nuclear nucleic acid-binding protein C1D
Location	Cp4.1LG06: 1590043 .. 1591988 (+)
RNA-Seq Expression	Cp4.1LG06g02900
Synteny	Cp4.1LG06g02900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTCCAAATAATTGAACGAAAAAACAGAAAAATCTCCACATGGAGATCGGCGGTGCATCGAACCAAACTGCCGCCATAAACCTCCTCCAGTTGTAACCCAAAAGCCCTACCCGTTCACTTTCCCCTCCACAATTCAACGACGGTGGTCCGAGCTCCCCTCCGCCGTCGCCATCCCAAATCGTCTCCTTTTTAAGGATTTGAATCTCGTCTCTTCGGTTTCTGTGAGTGCTCGTGATAGAGACGGAGTTCAAAATTGGGGGCAAATATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTTCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCATCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATGTAAAATACGAAGAGTTCTTGATTTTTTCTCTCTTTTATTTTGGATTATGGAGGCGAAATCTTTGTTTGATTTGGTGTTTTGCAGTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGTAATTATCCTCATTCCTTGAATCTGGTGATTATTCTTCCATTGTTTTTAAAAAAATCGTTCTTATGTTCTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATTGTTTCTTTGTTGTTCATACGTCCTTTCATGTTAGATTGATAATTTTGCATTCAAATTTGTTCATGATTTTGCATTCAAATTTGTTCATGATTTTGCATTCAAATTTGTTCATGAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGGTTAGCTGAATTTGTTTGCTTTTTTGTGTTGGGGAGGGGATTTCTGTTCTTGATTCCCTTTGATCAAGGAAATATTTGAATACTTTCAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAAGGACCATTATGTGGGGTTGCTTCAGATGATGAACTGCAGGAGGGCTGAATTCTCGTCCACTTTGGTACCTGTTTATCACATTTATGTCTAATTTTGGCGTCCTTTCTTTATAATCACATGCTTTTCCCTTTGAATAATTTTGATGTTCTTAATAAATTTTGCCATTTTAGTTCTATTGCTCATTCTTGCACCAAAGTTTTGACTGAATGATTTTTGTTCACTCCATGGAAGTATGAACTTTCCTTCATGTTTTAACACTTCCTCACCTTTACATCTTTCAGGAGTATGAAACCCAGATTCACTTGTGCTCTTAATTATCCCAACTCTTGAAGAATTGGTCCATTTTGAGGTTGGATTTGGGTCTCCTTGGAGCATTAAATTGTTTTCCCTTTACTTTAGAAGTCTTTATATATATATGCATTGGGAGTTTCAGCCCCATCATGAGCTAGTTGCTATAAGGACAGGACCTGGTTGGGATTTTGGCACTCTACTCTCTCTCATGGGCTGTTTTTGCTGGTTGTTTCCACCCCAAATTTTGTTTTTTTTTTTGAACTAGTGGGATCATATGAACAAGACATGATCTAGCCTACTTTGGTAGCTGACTTTTTAGATTTTTTTTTATCTGTATATCAGTGATCATCTTGTTACTTTGATTTGCCTTTTTGCCATAAATTAATAATAGTATGATCGTTGTGATAACCTACCTC

mRNA sequence

TTTTTTTTTTTTCCAAATAATTGAACGAAAAAACAGAAAAATCTCCACATGGAGATCGGCGGTGCATCGAACCAAACTGCCGCCATAAACCTCCTCCAGTTGTAACCCAAAAGCCCTACCCGTTCACTTTCCCCTCCACAATTCAACGACGGTGGTCCGAGCTCCCCTCCGCCGTCGCCATCCCAAATCGTCTCCTTTTTAAGGATTTGAATCTCGTCTCTTCGGTTTCTGTGAGTGCTCGTGATAGAGACGGAGTTCAAAATTGGGGGCAAATATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTTCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCATCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAAGGACCATTATGTGGGGTTGCTTCAGATGATGAACTGCAGGAGGGCTGAATTCTCGTCCACTTTGGAGTATGAAACCCAGATTCACTTGTGCTCTTAATTATCCCAACTCTTGAAGAATTGGTCCATTTTGAGGTTGGATTTGGGTCTCCTTGGAGCATTAAATTGTTTTCCCTTTACTTTAGAAGTCTTTATATATATATGCATTGGGAGTTTCAGCCCCATCATGAGCTAGTTGCTATAAGGACAGGACCTGGTTGGGATTTTGGCACTCTACTCTCTCTCATGGGCTGTTTTTGCTGGTTGTTTCCACCCCAAATTTTGTTTTTTTTTTTGAACTAGTGGGATCATATGAACAAGACATGATCTAGCCTACTTTGGTAGCTGACTTTTTAGATTTTTTTTTATCTGTATATCAGTGATCATCTTGTTACTTTGATTTGCCTTTTTGCCATAAATTAATAATAGTATGATCGTTGTGATAACCTACCTC

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTTCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCATCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAAGGACCATTATGTGGGGTTGCTTCAGATGATGAACTGCAGGAGGGCTGA

Protein sequence

MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLEKAARELLGDSNGGLQGPLCGVASDDELQEG

Homology

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08
Identity = 34/124 (27.42%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVTTTLFALK 71
           P ++ + +     +V  V   L  ++S++  E+L ++ PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDL 131
           +   G++P +HP+  ELER+  Y ++++          K++  L+  AA RFI+H+L D 
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDP 130

Query: 132 TQDQ 136
           T ++
Sbjct: 132 TSEE 130

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 31/117 (26.50%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVTTTLFALK 71
           P ++ D + T  +++  V   L +++S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSL 129
           +   G++P +HP+  ELER+  Y +K++          K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 39/143 (27.27%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 7   DSAV--VPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVT 66
           D+AV   P ++ D++     ++  VQ  + +L+S++  + L ++ PL++A+  L+ A   
Sbjct: 4   DAAVEDYPTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYAL 63

Query: 67  TTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFI 126
            ++F + +   GV+P DHPI  ELER+  Y +K++          +++  ++ +AA+RF+
Sbjct: 64  NSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEI-----TDRRKAAHIDKEAASRFV 123

Query: 127 EHSLPDLTQDQKQSMRDISRGKG 148
            ++L D   D+K+  +   + KG
Sbjct: 124 RNALWD-ADDKKRKDKTEHQQKG 140

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-07
Identity = 30/117 (25.64%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVTTTLFALK 71
           P ++ + + T   ++  V   L +++S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSL 129
           +   GV+P +HP+  ELER+ +Y ++++          K++  L+  AA+RF++++L
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAASRFVKNAL 122

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.7e-07
Identity = 34/135 (25.19%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLLARVTTTLFALK 71
           P ++ +S+     ++  V   L +++S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDL 131
           +   GV+P +HP+  ELER+ +Y ++++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWE- 130

Query: 132 TQDQKQSMRDISRGK 147
              QK +    ++GK
Sbjct: 131 -PKQKNTPNVANKGK 138

[Close]

BLAST of Cp4.1LG06g02900 vs. NCBI nr
Match: XP_023534951.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1019), Expect = 6.55e-139
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQEG 210
           KAARELLGDSNGGLQGPLCGVASDDELQEG
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDELQEG 210

[Close]

BLAST of Cp4.1LG06g02900 vs. NCBI nr
Match: KAG7024413.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392 bits (1006), Expect = 6.28e-137
Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209
           KAARELLGDSNGGLQGPLCGVASDDELQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209

[Close]

BLAST of Cp4.1LG06g02900 vs. NCBI nr
Match: XP_022935937.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 390 bits (1003), Expect = 1.80e-136
Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLY+DKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209
           KAARELLGDSNGGLQGPLCGVASDDELQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209

[Close]

BLAST of Cp4.1LG06g02900 vs. NCBI nr
Match: XP_022976264.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 390 bits (1003), Expect = 1.80e-136
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQEG 210
           KAA ELLGDSNGGLQGPLCGVASDDELQEG
Sbjct: 181 KAACELLGDSNGGLQGPLCGVASDDELQEG 210

[Close]

BLAST of Cp4.1LG06g02900 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 356 bits (914), Expect = 6.61e-123
Identity = 186/209 (89.00%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVR+SAVVPEKVMDSVK TL+NVEQVQTHLIS LSIAEP+VLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           +R TTTLFALK+RCSGVHPDDHPI +ELERLSLYQ+KLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGPKM+Q+ER +QKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209
           KAARELLGD+NGGLQGPLCG AS+D+LQE
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQE 209

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL
Match: A0A6J1IN17 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111476708 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 8.71e-137
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQEG 210
           KAA ELLGDSNGGLQGPLCGVASDDELQEG
Sbjct: 181 KAACELLGDSNGGLQGPLCGVASDDELQEG 210

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 8.71e-137
Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLY+DKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209
           KAARELLGDSNGGLQGPLCGVASDDELQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 3.20e-123
Identity = 186/209 (89.00%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVR+SAVVPEKVMDSVK TL+NVEQVQTHLIS LSIAEP+VLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           +R TTTLFALK+RCSGVHPDDHPI +ELERLSLYQ+KLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGPKM+Q+ER +QKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209
           KAARELLGD+NGGLQGPLCG AS+D+LQE
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQE 209

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 6.40e-121
Identity = 189/210 (90.00%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVE VQTHLIS LSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALK+RC+GVH DDHPI +ELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDE-LQE 209
           KAARELLGDSNGGLQGPLCG ASDD+ LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQE 210

[Close]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 6.40e-121
Identity = 189/210 (90.00%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVE VQTHLIS LSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALK+RC+GVH DDHPI +ELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGVASDDE-LQE 209
           KAARELLGDSNGGLQGPLCG ASDD+ LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQE 210

[Close]

BLAST of Cp4.1LG06g02900 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 205.3 bits (521), Expect = 4.8e-53
Identity = 113/212 (53.30%), Postives = 158/212 (74.53%), Query Frame = 0


Query: 1   MEGGVRDS-----AVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQ 60
           MEGG   S      VVPE  +++V  TL  +++++  L  +L++AEPEVLA M PLQRA+
Sbjct: 1   MEGGGGSSGGGAGGVVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAK 60

Query: 61  SMLLLARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTL 120
           +M LLA  TTTL+ L++RC+GV PDDH + +E+ER+++Y++K ++ +  SK PL+ +T L
Sbjct: 61  TMHLLAEATTTLYELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVL 120

Query: 121 NYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAA 180
           N QAATRFIEHSLPDLT  QKQS+RD+S+G+  +++  E +  +KRKYQS+EKQSVQ AA
Sbjct: 121 NRQAATRFIEHSLPDLTSTQKQSIRDLSKGEKSRIRYSETS-ARKRKYQSNEKQSVQSAA 180

Query: 181 KEFLEKAARELLGDSNGGLQGPLCGVA--SDD 206
           K+FLEKAARE++G +  GL+GPL   A  SDD
Sbjct: 181 KDFLEKAAREIIGHNENGLKGPLVAAADGSDD 211

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g02900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	4.6e-08	27.42	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	6.0e-08	26.50	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	7.8e-08	27.27	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q32PE4	6.6e-07	25.64	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q7TSU0	8.7e-07	25.19	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]

BLAST of Cp4.1LG06g02900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534951.1	6.55e-139	100.00	nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]	[more]
KAG7024413.1	6.28e-137	99.52	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022935937.1	1.80e-136	99.04	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata]	[more]
XP_022976264.1	1.80e-136	99.05	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]	[more]
XP_022939979.1	6.61e-123	89.00	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]

BLAST of Cp4.1LG06g02900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IN17	8.71e-137	99.05	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1F700	8.71e-137	99.04	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1FIR0	3.20e-123	89.00	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3D8Y3	6.40e-121	90.00	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	6.40e-121	90.00	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]

BLAST of Cp4.1LG06g02900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	4.8e-53	53.30	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..151
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 9..198
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 9..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g02900.1	Cp4.1LG06g02900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding