Cp4.1LG06g02790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g02790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein TIC 55, chloroplastic
Location	Cp4.1LG06: 1544403 .. 1546576 (+)
RNA-Seq Expression	Cp4.1LG06g02790
Synteny	Cp4.1LG06g02790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTCCGGCCATTTCTTTCCGTTTCCCCTTTCTCCCACGCACCTAAGCGCACGCGCTTCGCGAATGTCCTTAACGCTCCATCGCCTTCCGTTTCCTCTTTGCCGTTCAAATTAGTCGCCGCCAGGAAGAGATTCGTGGTTCGCGGCGACGCCGTTGTAGACGCCGGAACTACAGCTTCAATCGGCGATCTGAAGGACGATGATGATCAGGCGGTCATTTTGGGTCCGGCGACCGACGAGGAGCTTAGCGGTGGATCTTCGGTGGAGTACGACTGGACTGAAGAGTGGTACCCGCTGTACCTTACGCGAGATGTGCCGGAGGATGCTCCTTTAGGGCTCACTGTGTTCGATAAGCAGTTGGTTCTGTACCGCGATGGAACCGGCGAGCTCCGATGTCACGAAGACAGGTGCCCCCATAGGTATGAAAAAAAAAAAAAGACCCATGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAGCCAGTTCGAAATAAACTCATTAAGACCAAAATTCATCCGATTAACGCTTAATCTATTTCTATTTTGAGCTTGTTCTTCCTGTTAATTATGCATTTGTTGTTATTGTTTCTGGATAAACAATTAATCAAGGGATAATAAGAATTCATAGTATAACTTAAAATGGATCTGCTTAACTTACTTTAGTCTGATATTAGGCTAGCAAAGCTCTCTGAAGGCCAATTAATCGATGGCAAGCTGGAATGTCTTTACCATGGCTGGCAATTTGAAGGCGAGGGGAAATGTGTGAAGATTCCTCAGGTAATATTGAATGAATTTGATCTCTTTCTAAGTGCCTTTAAAAAGTCCTTAGAAACGAGTTGAATATAAATTGAATTGCATTAATCCATTCAACTTAGGCTTGAATTGTGTTATACAGCTTCCTTCAGATGCCAAGATTCCTAGATCAGCATGTCTAAGAACATACGAGGTAAGGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTCAAAAAGATACCATGGTTCGACAACTTCGAGCGGCCCGGGTTCCGAGACAATTCGACCATTCATGAGCTTCCTTATGATCACTCCATACTTCTTGAGAACCTTATGGATCCTGCACATGTACCTATCTCCCATGATAGAACAGATTTTAGTGCCAGAAGGGAAGATGCTCAGCCATTAGGATTCGAAGTTACCGAGCGTACGAACCGTGGTTTCGCTGGTCGATGGGGCCGTTCTAAAGAACAGTCATTGTCAAACTTCTTAAGGTTTGAAGCTCCTTGTGTCCTTCAGAATAACAAGGAAATTCCCAATGAAAAAGGTGCTGTGGATTACTTTACAGGACTTTTCCTCTGTAGGCCTACAGGCCAGGGGAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGATCTTCCCTTCTGTTGAAATTGCTGCCTTCATGGTTTATCCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATGAGAGAAAAACTGCCCACCAAAGAGCTCTACCTCAACTTACGATCTTCCGATACTTGGGTTCTCGAGTATCGACGCTGGATGGACAAGGTCGGGCACGGGATGCCGTATTACTTCGGACATGCTACAATTTCGTTGCCTAAACTGCCTGCTGTTGTTGAACACGCCCCGGTGGGACTAGTTGCTGGAGCTTCAGCATCTGCTCCAGCTAAAGGGGGGATCGGCACGATGCATTCTCCGAACTTGTCGAACCGATACTTTCGACATATCATTCATTGCAGGAGTTGCAGTAATGTCATCAAATCTTTTCAAACTTGGAATAAGGCTCTTTCTGCCATTGCCGTCACTTTGGTTGCATTGGCCATTTTGGTGAGTGGAAGGCAATGGAAGGCCCTCATTCTGTTGTCTGCAGCATTGTGCTATGGTGGAGCTTATGCATGCTCGGCTATTGTGGCATTAAATACCACTAATTTTATAAGAACTCACAGAAGGTTGTGATATTACATACATAGGGAGATTTAAGTACTGAACAGAGTGATTAAACCTCATGGTTTTCATTTTCTTAGGGGCGGTTTTGTTGAAGATCTTACTTGTGATGCTTGTAAAAAAATGTCTGAAAATTAAATATCTATGTTTGGTGTTTGTGAGATCCCA

mRNA sequence

ATGGCCTCTCTCCGGCCATTTCTTTCCGTTTCCCCTTTCTCCCACGCACCTAAGCGCACGCGCTTCGCGAATGTCCTTAACGCTCCATCGCCTTCCGTTTCCTCTTTGCCGTTCAAATTAGTCGCCGCCAGGAAGAGATTCGTGGTTCGCGGCGACGCCGTTGTAGACGCCGGAACTACAGCTTCAATCGGCGATCTGAAGGACGATGATGATCAGGCGGTCATTTTGGGTCCGGCGACCGACGAGGAGCTTAGCGGTGGATCTTCGGTGGAGTACGACTGGACTGAAGAGTGGTACCCGCTGTACCTTACGCGAGATGTGCCGGAGGATGCTCCTTTAGGGCTCACTGTGTTCGATAAGCAGTTGTCTGATATTAGGCTAGCAAAGCTCTCTGAAGGCCAATTAATCGATGGCAAGCTGGAATGTCTTTACCATGGCTGGCAATTTGAAGGCGAGGGGAAATGTGTGAAGATTCCTCAGCTTCCTTCAGATGCCAAGATTCCTAGATCAGCATGTCTAAGAACATACGAGGTAAGGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTCAAAAAGATACCATGGTTCGACAACTTCGAGCGGCCCGGGTTCCGAGACAATTCGACCATTCATGAGCTTCCTTATGATCACTCCATACTTCTTGAGAACCTTATGGATCCTGCACATGTACCTATCTCCCATGATAGAACAGATTTTAGTGCCAGAAGGGAAGATGCTCAGCCATTAGGATTCGAAGTTACCGAGCGTACGAACCGTGGTTTCGCTGGTCGATGGGGCCGTTCTAAAGAACAGTCATTGTCAAACTTCTTAAGGTTTGAAGCTCCTTGTGTCCTTCAGAATAACAAGGAAATTCCCAATGAAAAAGGTGCTGTGGATTACTTTACAGGACTTTTCCTCTGTAGGCCTACAGGCCAGGGGAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGATCTTCCCTTCTGTTGAAATTGCTGCCTTCATGGTTTATCCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATGAGAGAAAAACTGCCCACCAAAGAGCTCTACCTCAACTTACGATCTTCCGATACTTGGGTTCTCGAGTATCGACGCTGGATGGACAAGGTCGGGCACGGGATGCCGTATTACTTCGGACATGCTACAATTTCGTTGCCTAAACTGCCTGCTGTTGTTGAACACGCCCCGGTGGGACTAGTTGCTGGAGCTTCAGCATCTGCTCCAGCTAAAGGGGGGATCGGCACGATGCATTCTCCGAACTTGTCGAACCGATACTTTCGACATATCATTCATTGCAGGAGTTGCAGTAATGTCATCAAATCTTTTCAAACTTGGAATAAGGCTCTTTCTGCCATTGCCGTCACTTTGGTTGCATTGGCCATTTTGGTGAGTGGAAGGCAATGGAAGGCCCTCATTCTGTTGTCTGCAGCATTGTGCTATGGTGGAGCTTATGCATGCTCGGCTATTGTGGCATTAAATACCACTAATTTTATAAGAACTCACAGAAGGTTGTGATATTACATACATAGGGAGATTTAAGTACTGAACAGAGTGATTAAACCTCATGGTTTTCATTTTCTTAGGGGCGGTTTTGTTGAAGATCTTACTTGTGATGCTTGTAAAAAAATGTCTGAAAATTAAATATCTATGTTTGGTGTTTGTGAGATCCCA

Coding sequence (CDS)

ATGGCCTCTCTCCGGCCATTTCTTTCCGTTTCCCCTTTCTCCCACGCACCTAAGCGCACGCGCTTCGCGAATGTCCTTAACGCTCCATCGCCTTCCGTTTCCTCTTTGCCGTTCAAATTAGTCGCCGCCAGGAAGAGATTCGTGGTTCGCGGCGACGCCGTTGTAGACGCCGGAACTACAGCTTCAATCGGCGATCTGAAGGACGATGATGATCAGGCGGTCATTTTGGGTCCGGCGACCGACGAGGAGCTTAGCGGTGGATCTTCGGTGGAGTACGACTGGACTGAAGAGTGGTACCCGCTGTACCTTACGCGAGATGTGCCGGAGGATGCTCCTTTAGGGCTCACTGTGTTCGATAAGCAGTTGTCTGATATTAGGCTAGCAAAGCTCTCTGAAGGCCAATTAATCGATGGCAAGCTGGAATGTCTTTACCATGGCTGGCAATTTGAAGGCGAGGGGAAATGTGTGAAGATTCCTCAGCTTCCTTCAGATGCCAAGATTCCTAGATCAGCATGTCTAAGAACATACGAGGTAAGGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTCAAAAAGATACCATGGTTCGACAACTTCGAGCGGCCCGGGTTCCGAGACAATTCGACCATTCATGAGCTTCCTTATGATCACTCCATACTTCTTGAGAACCTTATGGATCCTGCACATGTACCTATCTCCCATGATAGAACAGATTTTAGTGCCAGAAGGGAAGATGCTCAGCCATTAGGATTCGAAGTTACCGAGCGTACGAACCGTGGTTTCGCTGGTCGATGGGGCCGTTCTAAAGAACAGTCATTGTCAAACTTCTTAAGGTTTGAAGCTCCTTGTGTCCTTCAGAATAACAAGGAAATTCCCAATGAAAAAGGTGCTGTGGATTACTTTACAGGACTTTTCCTCTGTAGGCCTACAGGCCAGGGGAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGATCTTCCCTTCTGTTGAAATTGCTGCCTTCATGGTTTATCCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATGAGAGAAAAACTGCCCACCAAAGAGCTCTACCTCAACTTACGATCTTCCGATACTTGGGTTCTCGAGTATCGACGCTGGATGGACAAGGTCGGGCACGGGATGCCGTATTACTTCGGACATGCTACAATTTCGTTGCCTAAACTGCCTGCTGTTGTTGAACACGCCCCGGTGGGACTAGTTGCTGGAGCTTCAGCATCTGCTCCAGCTAAAGGGGGGATCGGCACGATGCATTCTCCGAACTTGTCGAACCGATACTTTCGACATATCATTCATTGCAGGAGTTGCAGTAATGTCATCAAATCTTTTCAAACTTGGAATAAGGCTCTTTCTGCCATTGCCGTCACTTTGGTTGCATTGGCCATTTTGGTGAGTGGAAGGCAATGGAAGGCCCTCATTCTGTTGTCTGCAGCATTGTGCTATGGTGGAGCTTATGCATGCTCGGCTATTGTGGCATTAAATACCACTAATTTTATAAGAACTCACAGAAGGTTGTGA

Protein sequence

MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTTASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDKQLSDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFLRFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTNFIRTHRRL

Homology

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BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot
Match: O49931 (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 3.8e-216
Identity = 364/548 (66.42%), Postives = 434/548 (79.20%), Query Frame = 0


Query: 17  PKRTRFANVLNAP---------SPSVSSLPFKLVAARKRFVVRGDAVVDAGTTASIGDLK 76
           P +T FA  ++ P         +PS +    K +++R+R          A   A+  D+K
Sbjct: 14  PTKTHFALHVSPPPSKKTLLCTNPSSNFSFNKALSSRRR--------KQAWCVAAAADVK 73

Query: 77  D------DDDQAVILGPATDEELSGGSSV-EYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 136
           D      ++DQ V++GP++++E  G   V +YDWTEEWYPLYLT++VP DAPLGL V+DK
Sbjct: 74  DATLLDGEEDQKVLVGPSSEQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDK 133

Query: 137 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 196
            +                   RLAKLSEGQLIDG+LECLYHGWQFEGEGKCVKIPQLP+D
Sbjct: 134 NIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 193

Query: 197 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 256
           AKIP+SAC++TYEVRDSQGV+WVWMS + PP + KIPWF+NF RPGF+D ST HELPYDH
Sbjct: 194 AKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIPWFENFARPGFQDISTTHELPYDH 253

Query: 257 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 316
           SILLENLMDPAHVPISHDRTD+SA+REDAQ LGFEVTERT+RGFAG WGR K+ S  NFL
Sbjct: 254 SILLENLMDPAHVPISHDRTDWSAKREDAQALGFEVTERTDRGFAGWWGREKDGSKPNFL 313

Query: 317 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 376
           RFEAPCVLQNN+EI ++ G +++F+GLFLCRPTGQGKSMLIVRFG+T+ S L+KL P W+
Sbjct: 314 RFEAPCVLQNNREIVDKNGEINHFSGLFLCRPTGQGKSMLIVRFGATKRSPLIKLFPEWY 373

Query: 377 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 436
            HQNA KVFEQDMGFLSSQNE+L++EK+PTKELYLNL+SSDTWV EYR+WMDKVGHGMPY
Sbjct: 374 FHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPY 433

Query: 437 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 496
           +FGH+TISLP+ PAVVEHAP GLVAG SAS+PAKGGIGTMH+PNL+NRYFRH+IHC+ CS
Sbjct: 434 HFGHSTISLPEEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCS 493

Query: 497 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 533
           + IK+FQ W   LS + V L ALAILVSGRQWK L+L SA+LC  G YACS  +A+NTTN
Sbjct: 494 SAIKAFQIWKNVLSGVVVALAALAILVSGRQWKVLLLASASLCSVGVYACSTAIAMNTTN 553

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot
Match: Q9SK50 (Protein TIC 55, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 725.3 bits (1871), Expect = 4.9e-208
Identity = 368/549 (67.03%), Postives = 415/549 (75.59%), Query Frame = 0


Query: 6   PFLSVSPFSHAPKRTRFANVLNAP----SPSVSSLPFK-LVAARKRFVVRGDAVVDAGTT 65
           PFLS S          F  V   P      S  ++P K  +   +R  V G AV D   T
Sbjct: 4   PFLSSSLQLTPTSPILFTKVTPTPIIHNHRSTCTIPTKPRLRLLRRSAVAGTAVSD--QT 63

Query: 66  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 125
              GD        V+L P   EE       +YDWTEEWYPLYLT++VPEDAPLGLTV+D+
Sbjct: 64  EGGGD--------VLLNP---EEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDR 123

Query: 126 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 185
           Q+                   RLAKLSEGQLIDG+LECLYHGWQFEGEGKCVKIPQLP+ 
Sbjct: 124 QIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAS 183

Query: 186 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 245
           AKIP++AC++TYEV+DSQGVVWVWMS + PP  +K+PWF+NF RPGF D ST HELPYDH
Sbjct: 184 AKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDH 243

Query: 246 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSL-SNF 305
           SILLENLMDPAHVPISHDRTDF+A+REDAQPL FEVTER+NRGFAG WGR KE    SN 
Sbjct: 244 SILLENLMDPAHVPISHDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNL 303

Query: 306 LRFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSW 365
           LRF+APCVLQNN+E   + G  +YF+GLFLCRPTGQGKSMLIVRFG T+ S L+ +LP W
Sbjct: 304 LRFDAPCVLQNNREFEGKDGVKNYFSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQW 363

Query: 366 FIHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMP 425
           F HQNACKVFEQDMGFLSSQNEVLM+EK+PTK+LYLNL+SSDTWV EYR+WMDKVGHGMP
Sbjct: 364 FWHQNACKVFEQDMGFLSSQNEVLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMP 423

Query: 426 YYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSC 485
           Y+FGH TISLPK+P VVEHAP GL+A  SAS PAKGGIGTMH+PNL+NRYFRHIIHCRSC
Sbjct: 424 YHFGHRTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSC 483

Query: 486 SNVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTT 533
           SNVIKSF+ W   LSA AV L ALAILV  RQWKA++L SAALC   AY C   + LNT 
Sbjct: 484 SNVIKSFELWKNILSATAVALTALAILVVSRQWKAVLLGSAALCSAAAYTCLRAINLNTN 539

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.3e-32
Identity = 119/482 (24.69%), Postives = 186/482 (38.59%), Query Frame = 0


Query: 78  PATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFD--------------KQLS 137
           P   E L    S ++DW   WYP+    D+ +  P G  V                K + 
Sbjct: 65  PPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMD 124

Query: 138 DI---RLAKLSEGQLID-GKLECLYHGWQFEGEGKCVKIPQLPSD---AKIPRSACLRTY 197
           D    RLA LS+G++   G+L+C+YHGW F G G C  IPQ P D       + AC+  Y
Sbjct: 125 DTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVY 184

Query: 198 EVRDSQGVVWVWMSLEKPPTLKKI------PWFDNFERPGFRDNSTIHELPYDHSILLEN 257
                  ++W W + +  P  K I      P+    E P F       ++PY + +L+EN
Sbjct: 185 PSTVQHEIIWFWPNSD--PKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVEN 244

Query: 258 LMDPAHVPISH-----------------DRTDFS------------ARREDAQPLGFEVT 317
           LMDPAHVP +H                   + F+              RE  +PL   V 
Sbjct: 245 LMDPAHVPYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVK 304

Query: 318 ERTNRGFAGRWGRSKEQSLSNFLRFEAPCVLQNNKE------------IPNEKGAVD--Y 377
           +  N+GF  +    +E   SNF+   APCV +++ +              ++K A+    
Sbjct: 305 KLDNKGFFSK----QEWGYSNFI---APCVYRSSTDPLPEQEHEYPAPAASDKAALSKRR 364

Query: 378 FTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFLS-SQNEV 437
            + +F+C P   G+S LI  F       + K++P W  H     + + D+  L   + ++
Sbjct: 365 LSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKI 424

Query: 438 LMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFG-HATISLPKLPAVVEHAPV 488
           L R     ++       SD  V+ +RRW +K       + G      LP  P        
Sbjct: 425 LERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTPP------- 484

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot
Match: Q9ZWM5 (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CAO PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 6.6e-19
Identity = 85/352 (24.15%), Postives = 145/352 (41.19%), Query Frame = 0


Query: 84  LSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDKQLSDIRLAK-------------- 143
           L     +E      WYP   +  +P+D  +   +F +     R  K              
Sbjct: 291 LESSMEIEEGLRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRG 350

Query: 144 --LSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRDSQGVVWV 203
             LS G++++G++ C YHGW+F G+G C K+P  P      R+  +      +  G +WV
Sbjct: 351 CPLSLGKVVEGQVMCPYHGWEFNGDGACTKMPSTP----FCRNVGVAALPCAEKDGFIWV 410

Query: 204 WMSLEKPPTLKKIPWFDNFERP--GFRDNSTIH-ELPYDHSILLENLMDPAHVPISHDRT 263
           W     P   + +P   +F +P  GF  ++ I  ++P +H +L+ENL+D AH P +H  T
Sbjct: 411 WPGDGLP--AETLP---DFAQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTH--T 470

Query: 264 DFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFLRFEAPCVLQNNKEIPNE--- 323
              AR     P+   V    N+  +G W           + F+ PC+  +   +      
Sbjct: 471 STFAR---GWPVPDFVKFHANKALSGFW-----DPYPIDMAFQPPCMTLSTIGLAQPGKI 530

Query: 324 -KGAV-----DYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIH--------- 383
            +G       ++   L +C P+ +G + L+ R       + L  LP W  H         
Sbjct: 531 MRGVTASQCKNHLHQLHVCMPSKKGHTRLLYR-------MSLDFLP-WMRHVPFIDRIWK 590

Query: 384 QNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKV 399
           Q A +V  +D+  +  Q + ++R        + N    D   + YRRW + V
Sbjct: 591 QVAAQVLGEDLVLVLGQQDRMLR----GGSNWSNPAPYDKLAVRYRRWRNGV 611

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot
Match: Q8S7E1 (Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAO PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-18
Identity = 81/334 (24.25%), Postives = 141/334 (42.22%), Query Frame = 0


Query: 98  WYPLYLTRDVPEDAPLGLTVFDKQ----------------LSDIRLAKLSEGQLIDGKLE 157
           WYP+  + D+ +D  + +  F++Q                    R   L  G + +G+++
Sbjct: 220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQ 279

Query: 158 CLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIP 217
           C YHGW++  +GKC K+P          +  +R+    + +G+VW+W   + P +   IP
Sbjct: 280 CPYHGWEYSTDGKCEKMPSTKM-----LNVRIRSLPCFEQEGMVWIWPGNDPPKS--TIP 339

Query: 218 WFDNFERPGFRDNSTI-HELPYDHSILLENLMDPAHVPISHDRTDFSARREDAQPLGFEV 277
                   GF  ++ I  ELP +H +LL+NL+D AH P +H  T   A+      L   +
Sbjct: 340 --SLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTH--TSTFAKGWSVPSLVKFL 399

Query: 278 TERTNRGFAGRWGRSKEQSLSNFLRFEAPCVL--------QNNKEIPNEKGAVDYFTGLF 337
           T   + G  G W           + F  PC++            E  + K    +   L 
Sbjct: 400 T--PSSGLQGYW-----DPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLH 459

Query: 338 LCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIH----QNACKVFEQDMGFLSSQNEVLM 397
           +C P+ + K+ L+ R  S   +  +K +P  F+H      A KV  +D+  +  Q E ++
Sbjct: 460 ICLPSSRNKTRLLYRM-SLDFAPWIKHVP--FMHILWSHFAEKVLNEDLRLVLGQQERMI 519

Query: 398 REKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGM 403
                   ++    S D   + YR W D +  G+
Sbjct: 520 N----GANVWNWPVSYDKLGIRYRLWRDAIERGV 528

[Close]

BLAST of Cp4.1LG06g02790 vs. NCBI nr
Match: XP_023536593.1 (protein TIC 55, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1059 bits (2738), Expect = 0.0
Identity = 529/548 (96.53%), Postives = 529/548 (96.53%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT
Sbjct: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGTGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH
Sbjct: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL
Sbjct: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF
Sbjct: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS
Sbjct: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN
Sbjct: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. NCBI nr
Match: KAG7024401.1 (Protein TIC 55, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1050 bits (2715), Expect = 0.0
Identity = 518/532 (97.37%), Postives = 526/532 (98.87%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLSVSPFSHAPKRTRFANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGTT
Sbjct: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTT 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDDDQAVILGPATDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDDQAVILGPATDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QLSDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRD 180
           QL  + LAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPR+ACLRTYEVRD
Sbjct: 121 QL--VLLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRTACLRTYEVRD 180

Query: 181 SQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILLENLMDPAHVPIS 240
           SQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILLENLMDPAHVPIS
Sbjct: 181 SQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILLENLMDPAHVPIS 240

Query: 241 HDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFLRFEAPCVLQNNKEIPN 300
           HDRTDFSARREDAQPLGFEVTERTNRGFAGRWGR+KE +LSNFLRFEAPCVLQNN+EIPN
Sbjct: 241 HDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRAKEPALSNFLRFEAPCVLQNNREIPN 300

Query: 301 EKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFL 360
           EKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFL
Sbjct: 301 EKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFL 360

Query: 361 SSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHATISLPKLPAVV 420
           SSQNEVLMREK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHATISLPKLPAVV
Sbjct: 361 SSQNEVLMREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHATISLPKLPAVV 420

Query: 421 EHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAI 480
           EHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAI
Sbjct: 421 EHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAI 480

Query: 481 AVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTNFIRTHRRL 532
           AVTLVALAILVSGRQWKAL+LLSAALC GGAYACSAIVALNTTNFIRTHRRL
Sbjct: 481 AVTLVALAILVSGRQWKALVLLSAALCCGGAYACSAIVALNTTNFIRTHRRL 530

[Close]

BLAST of Cp4.1LG06g02790 vs. NCBI nr
Match: XP_022937322.1 (protein TIC 55, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937323.1 protein TIC 55, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 1044 bits (2700), Expect = 0.0
Identity = 519/548 (94.71%), Postives = 526/548 (95.99%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLSVSPFSHAPKRTRFANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGTT
Sbjct: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTT 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDDDQAVILGPATDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDDQAVILGPATDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGTGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPR+ACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH
Sbjct: 181 AKIPRTACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGR+KE +LSNFL
Sbjct: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRAKEPALSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNN+EIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF
Sbjct: 301 RFEAPCVLQNNREIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           IHQNACKVFEQDMGFLSSQNEVLMREK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 IHQNACKVFEQDMGFLSSQNEVLMREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS
Sbjct: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKAL+LLSAALC GGAYACSAIVALNTTN
Sbjct: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALVLLSAALCCGGAYACSAIVALNTTN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. NCBI nr
Match: KAG6591514.1 (Protein TIC 55, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1044 bits (2699), Expect = 0.0
Identity = 518/544 (95.22%), Postives = 526/544 (96.69%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLSVSPFSHAPKRTRFANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGTT
Sbjct: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTT 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDDDQAVILG ATDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDDQAVILGSATDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIP 180
           QL             + RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIP
Sbjct: 121 QLVLYRDGTGELRCHEDRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIP 180

Query: 181 RSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILL 240
           R+ACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILL
Sbjct: 181 RTACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILL 240

Query: 241 ENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFLRFEA 300
           ENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGR+KE +LSNFLRFEA
Sbjct: 241 ENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRAKEPALSNFLRFEA 300

Query: 301 PCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQN 360
           PCVLQNN+EIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQN
Sbjct: 301 PCVLQNNREIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQN 360

Query: 361 ACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGH 420
           ACKVFEQDMGFLSSQNEVLMREK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGH
Sbjct: 361 ACKVFEQDMGFLSSQNEVLMREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGH 420

Query: 421 ATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIK 480
           ATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIK
Sbjct: 421 ATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIK 480

Query: 481 SFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTNFIRT 532
           SFQTWNKALSAIAVTLVALAILVSGRQWKAL+LLSAALC GGAYACSAIVALNTTNFIRT
Sbjct: 481 SFQTWNKALSAIAVTLVALAILVSGRQWKALVLLSAALCCGGAYACSAIVALNTTNFIRT 540

[Close]

BLAST of Cp4.1LG06g02790 vs. NCBI nr
Match: XP_022976996.1 (protein TIC 55, chloroplastic isoform X1 [Cucurbita maxima] >XP_022976997.1 protein TIC 55, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 1035 bits (2677), Expect = 0.0
Identity = 514/548 (93.80%), Postives = 521/548 (95.07%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLS+SPFS APKRT FANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGT 
Sbjct: 1   MASLRPFLSISPFSRAPKRTHFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTA 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDD+QAVILGP TDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDNQAVILGPTTDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGSGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH
Sbjct: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQ+LSNFL
Sbjct: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQALSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSS L K LPSWF
Sbjct: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSFLWKFLPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           +HQNACKVFEQDMGFLSSQNEVL+REK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 LHQNACKVFEQDMGFLSSQNEVLIREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS
Sbjct: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN
Sbjct: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL
Match: A0A6J1FAV6 (protein TIC 55, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443647 PE=4 SV=1)

HSP 1 Score: 1044 bits (2700), Expect = 0.0
Identity = 519/548 (94.71%), Postives = 526/548 (95.99%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLSVSPFSHAPKRTRFANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGTT
Sbjct: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTT 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDDDQAVILGPATDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDDQAVILGPATDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGTGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPR+ACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH
Sbjct: 181 AKIPRTACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGR+KE +LSNFL
Sbjct: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRAKEPALSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNN+EIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF
Sbjct: 301 RFEAPCVLQNNREIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           IHQNACKVFEQDMGFLSSQNEVLMREK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 IHQNACKVFEQDMGFLSSQNEVLMREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS
Sbjct: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKAL+LLSAALC GGAYACSAIVALNTTN
Sbjct: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALVLLSAALCCGGAYACSAIVALNTTN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL
Match: A0A6J1IH83 (protein TIC 55, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477196 PE=4 SV=1)

HSP 1 Score: 1035 bits (2677), Expect = 0.0
Identity = 514/548 (93.80%), Postives = 521/548 (95.07%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLS+SPFS APKRT FANVLNAPSPS SSLPFKLVAARKRFVVRGDAVVDAGT 
Sbjct: 1   MASLRPFLSISPFSRAPKRTHFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTA 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
           ASIGDLKDDD+QAVILGP TDEELSGGS+VEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  ASIGDLKDDDNQAVILGPTTDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGSGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH
Sbjct: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQ+LSNFL
Sbjct: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQALSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSS L K LPSWF
Sbjct: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSFLWKFLPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           +HQNACKVFEQDMGFLSSQNEVL+REK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 LHQNACKVFEQDMGFLSSQNEVLIREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS
Sbjct: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN
Sbjct: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL
Match: A0A5D3D8Y6 (Protein TIC 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001440 PE=4 SV=1)

HSP 1 Score: 878 bits (2268), Expect = 0.0
Identity = 433/548 (79.01%), Postives = 473/548 (86.31%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLS+SP   AP  TR  + L   +P  SS  FKLV+A+ RF VR  AV  A   
Sbjct: 1   MASLRPFLSLSPVFPAPNHTRPTDSLLIHAPFSSS--FKLVSAKPRFAVRTAAVAGAEIA 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
             +GDLKDDD+Q V+L P T E+  G ++ EY+WTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  DPVGDLKDDDNQVVLLDPTTSEKPDGEATAEYNWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDG+LECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGAGELHCHEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPRSACLRTYEVR+SQGVVWVWMSLEKP TLK IPWF+NF+RPGFRD S+IHELPYDH
Sbjct: 181 AKIPRSACLRTYEVRESQGVVWVWMSLEKPSTLKNIPWFENFDRPGFRDFSSIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAH+PISHDRT + A+REDAQPL FEVTERTNRGFAGRWG +KEQ LSNFL
Sbjct: 241 SILLENLMDPAHIPISHDRTSYPAKREDAQPLAFEVTERTNRGFAGRWGNAKEQPLSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNN+E  N+KG +DYFTGLFLCRPTGQGKSM+IVRFGST S++ L L PSWF
Sbjct: 301 RFEAPCVLQNNRETTNKKGEIDYFTGLFLCRPTGQGKSMVIVRFGSTASTVRLNLFPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           +HQNAC+VFEQDMGFLSSQNEVLM+EK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 LHQNACRVFEQDMGFLSSQNEVLMKEKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGH+TISLPKLPAV+EHAP GLVAG +AS PAKGGIGTMH+PNL+NRYFRHIIHCRSCS
Sbjct: 421 YFGHSTISLPKLPAVIEHAPAGLVAGTAASPPAKGGIGTMHAPNLNNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIA+TL+ALAILV+GRQWKAL LLSAAL +GGAYACSA VALNT N
Sbjct: 481 NVIKSFQTWNKALSAIAITLIALAILVNGRQWKALSLLSAALFFGGAYACSAAVALNTDN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL
Match: A0A1S3BUS9 (protein TIC 55, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493728 PE=4 SV=1)

HSP 1 Score: 878 bits (2268), Expect = 0.0
Identity = 433/548 (79.01%), Postives = 473/548 (86.31%), Query Frame = 0


Query: 1   MASLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPFKLVAARKRFVVRGDAVVDAGTT 60
           MASLRPFLS+SP   AP  TR  + L   +P  SS  FKLV+A+ RF VR  AV  A   
Sbjct: 1   MASLRPFLSLSPVFPAPNHTRPTDSLLIHAPFSSS--FKLVSAKPRFAVRTAAVAGAEIA 60

Query: 61  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 120
             +GDLKDDD+Q V+L P T E+  G ++ EY+WTEEWYPLYLTRDVPEDAPLGLTVFDK
Sbjct: 61  DPVGDLKDDDNQVVLLDPTTSEKPDGEATAEYNWTEEWYPLYLTRDVPEDAPLGLTVFDK 120

Query: 121 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 180
           QL                   RLAKLSEGQLIDG+LECLYHGWQFEGEGKCVKIPQLPSD
Sbjct: 121 QLVLYRDGAGELHCHEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPSD 180

Query: 181 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 240
           AKIPRSACLRTYEVR+SQGVVWVWMSLEKP TLK IPWF+NF+RPGFRD S+IHELPYDH
Sbjct: 181 AKIPRSACLRTYEVRESQGVVWVWMSLEKPSTLKNIPWFENFDRPGFRDFSSIHELPYDH 240

Query: 241 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 300
           SILLENLMDPAH+PISHDRT + A+REDAQPL FEVTERTNRGFAGRWG +KEQ LSNFL
Sbjct: 241 SILLENLMDPAHIPISHDRTSYPAKREDAQPLAFEVTERTNRGFAGRWGNAKEQPLSNFL 300

Query: 301 RFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWF 360
           RFEAPCVLQNN+E  N+KG +DYFTGLFLCRPTGQGKSM+IVRFGST S++ L L PSWF
Sbjct: 301 RFEAPCVLQNNRETTNKKGEIDYFTGLFLCRPTGQGKSMVIVRFGSTASTVRLNLFPSWF 360

Query: 361 IHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420
           +HQNAC+VFEQDMGFLSSQNEVLM+EK+PTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY
Sbjct: 361 LHQNACRVFEQDMGFLSSQNEVLMKEKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPY 420

Query: 421 YFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCS 480
           YFGH+TISLPKLPAV+EHAP GLVAG +AS PAKGGIGTMH+PNL+NRYFRHIIHCRSCS
Sbjct: 421 YFGHSTISLPKLPAVIEHAPAGLVAGTAASPPAKGGIGTMHAPNLNNRYFRHIIHCRSCS 480

Query: 481 NVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTN 532
           NVIKSFQTWNKALSAIA+TL+ALAILV+GRQWKAL LLSAAL +GGAYACSA VALNT N
Sbjct: 481 NVIKSFQTWNKALSAIAITLIALAILVNGRQWKALSLLSAALFFGGAYACSAAVALNTDN 540

[Close]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL
Match: A0A6J1DRF0 (protein TIC 55, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022434 PE=4 SV=1)

HSP 1 Score: 874 bits (2257), Expect = 0.0
Identity = 434/551 (78.77%), Postives = 475/551 (86.21%), Query Frame = 0


Query: 3   SLRPFLSVSPFSHAPKRTRFANVLNAPSPSVSSLPF-KLVAARKRFVVRGDAVVDAGTT- 62
           SLRP L +SP SHA K TR  N+L  P+ S SS PF  L AARKR  V G AV DA    
Sbjct: 5   SLRPCLPISPLSHASKPTRLPNLLLLPASSSSSSPFFTLAAARKRPAVCGAAVTDAEAAV 64

Query: 63  --ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVF 122
             A I DL DD ++  +L P  +EE+  G++ EYDWTEEWYPLYLTR+VPEDAPLGLTVF
Sbjct: 65  AAAPINDLTDDGERRAVLDPTAEEEVGDGAAAEYDWTEEWYPLYLTRNVPEDAPLGLTVF 124

Query: 123 DKQL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLP 182
           DKQL                   RLAKLSEGQ++DG+LECLYHGWQ+EG+GKCVKIPQLP
Sbjct: 125 DKQLVLYRDGAGELRCHEDRCPHRLAKLSEGQIMDGRLECLYHGWQYEGDGKCVKIPQLP 184

Query: 183 SDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPY 242
           SDAKIPRSACL+TYEVRDSQGVVWVWMSL+KP TLKKIPWF+NFERPGFRD ST+HELPY
Sbjct: 185 SDAKIPRSACLKTYEVRDSQGVVWVWMSLKKPSTLKKIPWFENFERPGFRDFSTVHELPY 244

Query: 243 DHSILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSN 302
           DHSILLENLMDPAH+PISHDRTDF+ARREDAQ LGFEVTERT+RGFAGRWG +K+Q L N
Sbjct: 245 DHSILLENLMDPAHIPISHDRTDFTARREDAQALGFEVTERTDRGFAGRWGYAKDQPLPN 304

Query: 303 FLRFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTR-SSLLLKLLP 362
           FLRFEAPCVL N++EIPNEKG   +F+GLFLCRPTGQGKSMLIVRFGSTR SS LLKLLP
Sbjct: 305 FLRFEAPCVLHNSREIPNEKGGKYFFSGLFLCRPTGQGKSMLIVRFGSTRPSSFLLKLLP 364

Query: 363 SWFIHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHG 422
            WF+HQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTW+ EYRRWMDKVGHG
Sbjct: 365 LWFVHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWIAEYRRWMDKVGHG 424

Query: 423 MPYYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCR 482
           MPYYFGH+TISLP+LPAVVEHAPVGL+AGASAS PAKGGIGTMH+PNL+NRYFRH++HCR
Sbjct: 425 MPYYFGHSTISLPELPAVVEHAPVGLLAGASASTPAKGGIGTMHAPNLANRYFRHVVHCR 484

Query: 483 SCSNVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALN 532
           SCSNVIK+FQ WNKALSA+A+ LVALAILVSGRQWKALILLSAA C GGAYACSAIVALN
Sbjct: 485 SCSNVIKAFQIWNKALSAMAIALVALAILVSGRQWKALILLSAASCSGGAYACSAIVALN 544

[Close]

BLAST of Cp4.1LG06g02790 vs. TAIR 10
Match: AT2G24820.1 (translocon at the inner envelope membrane of chloroplasts 55-II )

HSP 1 Score: 725.3 bits (1871), Expect = 3.5e-209
Identity = 368/549 (67.03%), Postives = 415/549 (75.59%), Query Frame = 0


Query: 6   PFLSVSPFSHAPKRTRFANVLNAP----SPSVSSLPFK-LVAARKRFVVRGDAVVDAGTT 65
           PFLS S          F  V   P      S  ++P K  +   +R  V G AV D   T
Sbjct: 4   PFLSSSLQLTPTSPILFTKVTPTPIIHNHRSTCTIPTKPRLRLLRRSAVAGTAVSD--QT 63

Query: 66  ASIGDLKDDDDQAVILGPATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDK 125
              GD        V+L P   EE       +YDWTEEWYPLYLT++VPEDAPLGLTV+D+
Sbjct: 64  EGGGD--------VLLNP---EEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDR 123

Query: 126 QL----------------SDIRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSD 185
           Q+                   RLAKLSEGQLIDG+LECLYHGWQFEGEGKCVKIPQLP+ 
Sbjct: 124 QIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAS 183

Query: 186 AKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDH 245
           AKIP++AC++TYEV+DSQGVVWVWMS + PP  +K+PWF+NF RPGF D ST HELPYDH
Sbjct: 184 AKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDH 243

Query: 246 SILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSL-SNF 305
           SILLENLMDPAHVPISHDRTDF+A+REDAQPL FEVTER+NRGFAG WGR KE    SN 
Sbjct: 244 SILLENLMDPAHVPISHDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNL 303

Query: 306 LRFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSW 365
           LRF+APCVLQNN+E   + G  +YF+GLFLCRPTGQGKSMLIVRFG T+ S L+ +LP W
Sbjct: 304 LRFDAPCVLQNNREFEGKDGVKNYFSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQW 363

Query: 366 FIHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMP 425
           F HQNACKVFEQDMGFLSSQNEVLM+EK+PTK+LYLNL+SSDTWV EYR+WMDKVGHGMP
Sbjct: 364 FWHQNACKVFEQDMGFLSSQNEVLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMP 423

Query: 426 YYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSC 485
           Y+FGH TISLPK+P VVEHAP GL+A  SAS PAKGGIGTMH+PNL+NRYFRHIIHCRSC
Sbjct: 424 YHFGHRTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSC 483

Query: 486 SNVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTT 533
           SNVIKSF+ W   LSA AV L ALAILV  RQWKA++L SAALC   AY C   + LNT 
Sbjct: 484 SNVIKSFELWKNILSATAVALTALAILVVSRQWKAVLLGSAALCSAAAYTCLRAINLNTN 539

[Close]

BLAST of Cp4.1LG06g02790 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like )

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-36
Identity = 118/459 (25.71%), Postives = 184/459 (40.09%), Query Frame = 0


Query: 78  PATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFD--------------KQLS 137
           P   E L    S ++DW   WYP+    D+ +  P G  V                K + 
Sbjct: 65  PPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMD 124

Query: 138 DI---RLAKLSEGQLID-GKLECLYHGWQFEGEGKCVKIPQLPSD---AKIPRSACLRTY 197
           D    RLA LS+G++   G+L+C+YHGW F G G C  IPQ P D       + AC+  Y
Sbjct: 125 DTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVY 184

Query: 198 EVRDSQGVVWVWMSLEKPPTLKKI------PWFDNFERPGFRDNSTIHELPYDHSILLEN 257
                  ++W W + +  P  K I      P+    E P F       ++PY + +L+EN
Sbjct: 185 PSTVQHEIIWFWPNSD--PKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVEN 244

Query: 258 LMDPAHVPISH------DRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFL 317
           LMDPAHVP +H       +      RE  +PL   V +  N+GF  +    +E   SNF+
Sbjct: 245 LMDPAHVPYAHYGLMRFPKPKEKIDREGGKPLEINVKKLDNKGFFSK----QEWGYSNFI 304

Query: 318 RFEAPCVLQNNKE------------IPNEKGAVD--YFTGLFLCRPTGQGKSMLIVRFGS 377
              APCV +++ +              ++K A+     + +F+C P   G+S LI  F  
Sbjct: 305 ---APCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRLIWTFPR 364

Query: 378 TRSSLLLKLLPSWFIHQNACKVFEQDMGFLS-SQNEVLMREKLPTKELYLNLRSSDTWVL 437
                + K++P W  H     + + D+  L   + ++L R     ++       SD  V+
Sbjct: 365 NFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVV 424

Query: 438 EYRRWMDKVGHGMPYYFG-HATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPN 488
            +RRW +K       + G      LP  P                               
Sbjct: 425 TFRRWFNKYSEARVDWRGKFDPFLLPPTPP---------------------------REQ 484

[Close]

BLAST of Cp4.1LG06g02790 vs. TAIR 10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain )

HSP 1 Score: 149.4 bits (376), Expect = 7.9e-36
Identity = 135/484 (27.89%), Postives = 212/484 (43.80%), Query Frame = 0


Query: 81  DEELSGGSSVEYDWTEEWYPLYLTRDVPEDAP-----LGLTV---FDK---------QLS 140
           D+E  G    E+ W + WYP+ L  D+  + P     LG  +   FD+          L 
Sbjct: 74  DKEEEGS---EFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLC 133

Query: 141 DIRLAKLSEGQLID-GKLECLYHGWQFEGEGKCVKIPQLPSD------AKIPRSACLRTY 200
             RLA LSEG+L + G L+C YHGW F G G C +IPQ  +        K PR AC   +
Sbjct: 134 PHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPR-ACAIKF 193

Query: 201 EVRDSQGVVWVW---------MSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSIL 260
               SQG+++VW          S+E P    ++P  D+F++P F   +   +L Y +  L
Sbjct: 194 PTMVSQGLLFVWPDENGWDRANSIEPP----RLP--DDFDKPEFSTVTIQRDLFYGYDTL 253

Query: 261 LENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQSLSNFLRFE 320
           +EN+ DP+H+  +H +   + RR+ A+PL F+V      GF G    + + S     +F 
Sbjct: 254 MENVSDPSHIDFAHHKV--TGRRDRAKPLPFKVESSGPWGFQG----ANDDSPRITAKFV 313

Query: 321 APCVLQNNKEIPNEKGAV-DYFTGLFLCR---PTGQGKSMLIVRFG------STRSSLLL 380
           APC   N  E+  +   V +    +++C    P   GK+  IV         S       
Sbjct: 314 APCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWW 373

Query: 381 KLLPSWFIHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLR---------SSDTWV 440
           +++P W+ H  +  V++ DM  L  Q +V + + + + +  +N +          +D +V
Sbjct: 374 QVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQADRFV 433

Query: 441 LEYRRWMDKVGHGMPYYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPN 500
           L +R W+ + G   P +FG +T S   LP+ V                       +    
Sbjct: 434 LAFRNWLRRHGKSQPEWFG-STPSNQPLPSTV-----------------------LTKRQ 493

Query: 501 LSNRYFRHIIHCRSCSNVIKSFQTWNKALSAIAVTLVALAILVSGRQWK----ALILLSA 509
           + +R+ +H   C SC     SFQ   K L    V   A A + S  Q +     L L+SA
Sbjct: 494 MLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISA 517

[Close]

BLAST of Cp4.1LG06g02790 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like )

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-33
Identity = 119/482 (24.69%), Postives = 186/482 (38.59%), Query Frame = 0


Query: 78  PATDEELSGGSSVEYDWTEEWYPLYLTRDVPEDAPLGLTVFD--------------KQLS 137
           P   E L    S ++DW   WYP+    D+ +  P G  V                K + 
Sbjct: 65  PPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMD 124

Query: 138 DI---RLAKLSEGQLID-GKLECLYHGWQFEGEGKCVKIPQLPSD---AKIPRSACLRTY 197
           D    RLA LS+G++   G+L+C+YHGW F G G C  IPQ P D       + AC+  Y
Sbjct: 125 DTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVY 184

Query: 198 EVRDSQGVVWVWMSLEKPPTLKKI------PWFDNFERPGFRDNSTIHELPYDHSILLEN 257
                  ++W W + +  P  K I      P+    E P F       ++PY + +L+EN
Sbjct: 185 PSTVQHEIIWFWPNSD--PKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVEN 244

Query: 258 LMDPAHVPISH-----------------DRTDFS------------ARREDAQPLGFEVT 317
           LMDPAHVP +H                   + F+              RE  +PL   V 
Sbjct: 245 LMDPAHVPYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVK 304

Query: 318 ERTNRGFAGRWGRSKEQSLSNFLRFEAPCVLQNNKE------------IPNEKGAVD--Y 377
           +  N+GF  +    +E   SNF+   APCV +++ +              ++K A+    
Sbjct: 305 KLDNKGFFSK----QEWGYSNFI---APCVYRSSTDPLPEQEHEYPAPAASDKAALSKRR 364

Query: 378 FTGLFLCRPTGQGKSMLIVRFGSTRSSLLLKLLPSWFIHQNACKVFEQDMGFLS-SQNEV 437
            + +F+C P   G+S LI  F       + K++P W  H     + + D+  L   + ++
Sbjct: 365 LSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKI 424

Query: 438 LMREKLPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFG-HATISLPKLPAVVEHAPV 488
           L R     ++       SD  V+ +RRW +K       + G      LP  P        
Sbjct: 425 LERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTPP------- 484

[Close]

BLAST of Cp4.1LG06g02790 vs. TAIR 10
Match: AT1G44446.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-18
Identity = 81/337 (24.04%), Postives = 138/337 (40.95%), Query Frame = 0


Query: 98  WYPLYLTRDVPEDAPLGLTVFD----------------KQLSDIRLAKLSEGQLIDGKLE 157
           WYP+  T D+  D  + +  F+                +     R   L  G + +G+++
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 158 CLYHGWQFEGEGKCVKIPQLP-SDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKI 217
           C YHGW++  +G+C K+P       KI    CL      + +G++W+W   E P      
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCL------EQEGMIWIWPGDEPP-----A 340

Query: 218 PWFDNFERP-GFRDNS-TIHELPYDHSILLENLMDPAHVPISHDRTDFSARREDAQPLGF 277
           P   + + P GF  ++  + +LP +H +LL+NL+D AH P +H  T   A+      L  
Sbjct: 341 PILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTH--TSTFAKGWSVPSLVK 400

Query: 278 EVTERTNRGFAGRWGRSKEQSLSNFLRFEAPCVL--------QNNKEIPNEKGAVDYFTG 337
            +T  +  G  G W           + F+ PC++            E  + +    +   
Sbjct: 401 FLTPTS--GLQGYW-----DPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQ 460

Query: 338 LFLCRPTGQGKSMLIVRFGSTRSSLLLKLLP--SWFIHQNACKVFEQDMGFLSSQNEVLM 397
           L +C P+ + K+ L+ R  S   + +LK LP         A +V  +D+  +  Q E ++
Sbjct: 461 LHVCLPSSKNKTRLLYRM-SLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERML 520

Query: 398 RE----KLPTKELYLNLRSSDTWVLEYRRWMDKVGHG 402
                  LP     L +R        YR W + V  G
Sbjct: 521 NGANIWNLPVAYDKLGVR--------YRLWRNAVDRG 528

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g02790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49931	3.8e-216	66.42	Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1	[more]
Q9SK50	4.9e-208	67.03	Protein TIC 55, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC55 PE=1 SV=1	[more]
Q8W496	2.3e-32	24.69	Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop...	[more]
Q9ZWM5	6.6e-19	24.15	Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 G...	[more]
Q8S7E1	3.3e-18	24.25	Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Cp4.1LG06g02790 vs. NCBI nr


Match Name	Identity	Description
XP_023536593.1	96.53	protein TIC 55, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7024401.1	97.37	Protein TIC 55, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022937322.1	94.71	protein TIC 55, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937323.1 pr...	[more]
KAG6591514.1	95.22	Protein TIC 55, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022976996.1	93.80	protein TIC 55, chloroplastic isoform X1 [Cucurbita maxima] >XP_022976997.1 prot...	[more]

BLAST of Cp4.1LG06g02790 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1FAV6	94.71	protein TIC 55, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IH83	93.80	protein TIC 55, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A5D3D8Y6	79.01	Protein TIC 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00144...	[more]
A0A1S3BUS9	79.01	protein TIC 55, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493728 PE=4 SV=1	[more]
A0A6J1DRF0	78.77	protein TIC 55, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022434 PE=...	[more]

BLAST of Cp4.1LG06g02790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24820.1	3.5e-209	67.03	translocon at the inner envelope membrane of chloroplasts 55-II	[more]
AT4G25650.1	2.1e-36	25.71	ACD1-like	[more]
AT3G44880.1	7.9e-36	27.89	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	[more]
AT4G25650.2	1.7e-33	24.69	ACD1-like	[more]
AT1G44446.1	2.0e-18	24.04	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	GENE3D	2.102.10.10		coord: 93..205 e-value: 9.1E-23 score: 82.2
IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	SUPERFAMILY	50022	ISP domain	coord: 91..195
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PFAM	PF00355	Rieske	coord: 128..163 e-value: 2.7E-6 score: 27.2
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROSITE	PS51296	RIESKE	coord: 126..187 score: 17.102036
IPR013626	Pheophorbide a oxygenase	PFAM	PF08417	PaO	coord: 286..371 e-value: 5.6E-20 score: 71.3
None	No IPR available	GENE3D	3.90.380.10		coord: 209..400 e-value: 1.7E-11 score: 46.3
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 66..532
None	No IPR available	PANTHER	PTHR21266:SF29	PROTEIN TIC 55, CHLOROPLASTIC	coord: 66..532
None	No IPR available	SUPERFAMILY	55961	Bet v1-like	coord: 183..401

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g02790.1	Cp4.1LG06g02790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045036	protein targeting to chloroplast
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031967	organelle envelope
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding