Cp4.1LG06g02510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g02510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 1326761 .. 1329830 (+)
RNA-Seq ExpressionCp4.1LG06g02510
SyntenyCp4.1LG06g02510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAAGGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTATACCGGATTTCATTGTTCAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCCATCCATTTCTGTCTTGCTTCTATTCTGGCTGCATTTATTGGTTAGTGTTTTTGTAAAGCTCTGTATTCTACTGGTAGTGGATATTTGTTAGAGAAGCTGATCGTTGAGTGCTTGCATGGAGAAATTAAAGAGAGTTCAAGTGAATTGGTAGTTAATGAAGTTCACTCGATCATTCTCTGCCTAATGACGTTTCGAGAATGTATTATTATTATCTGCCTAATGATATTTGGATAGCGTTCTTAAGTTATCGAGAATGTTATGTTACTTTGTGGCATGTAGTCACTGGCTATGCTGTCCTAAGACAATGTGGGATAGTGTCTTCATAGTGTTTATGAACACCATGATAGAACAATAGAAGGAGAAGTGGAGAAGCTAATCAAGCAGATCAGGCTGCCTTGCTACCATGTAGATGGGAAGGTATTAGGCACGGAATTAGTCCGTTGTCTGAAGGAGGGGACTAGGAAAATAGATAACAACAGGGAAGAGGGACGCGAGCCAAAATGTCGGGCATCAATGTCCAAATTTCCAAAATCGTGCGTATGCATCATTATTTTTCTTATTTTTCGGCAATCTGCATTTTCACACAGGTGATGAAAGTATATATGGGGTATTTCCCTCGAGGAGTTTTACTCACGGCTTAGATTCAAGCACAGGGGCTCGGTAGCATGTGCAAATGCTGGGTCGCCTCATTCTAATGGAACTAAATGTTGTTATAACCTCGAGTCGATGTGATGAACTTGACAAGAAGCATCAATTTAAAGAAAGGTAACAATGATTCTTATTGTGCAACCATTTTGATATTGCTTGCTAATGTAATGATGGAGTTCATTGGTTGTTTTAGGTCAATGGGGATCCTGTGGATCCACCCAAGATAAAATCAGTTGAGGTAGGATTTAATGATAGAAGTTTTGAACTAGGTTGCAGTTTCATAATAGTTTTTACTTTTGATGGTCCTTTCATGTTTCCCTAATGTTATAAGCTTCTATTATGTAAAAAGAATCTTTAAGGTACTTTGGAATCGATTAGAGACGATGTTGATTCTGAAAACATGGACACTAAGAAGAAAGCTGTGAAGTTAGAGTTCATACATTGCAGAACTCTCTTCGGAGATACATACCTTGGTTACTCCTGATTTCTCTGTTGCTTGGTATGTTTGCGTACTGTAGAAAACGAAATTTACTATCATTTGGAGAAGAAGCTGAAGATGATGAGAAAGAACTGACAGCTTTGAAGAGAAAAAAAAAAAAATAGGAACAGTCATGATGTATTGGATGATCCACGTCTGTTATTGGAAGAGATTCCAAGCAGTGCTTCGGTAAATAAACAAACAAAATAAAGTAAGAAACTTTTTAGGGGGAAAATGAATTAGTATAAGCTTGCTGCTATCTTGATCTGAACAACTTTCAAGTAATCATCTTCTGAATGCCTCATTTCAACTTTCCCCTTGCAAGCTCAATTCTTACCCAAAAAAACCCCTTGATTTTCATACGAGGTCTGTTCATCTGAGATAAGTGTCAATAATATCTTCTTCTAACATTCACTTTTGAAGCTGCGGTAGTTGCAAAACTTAGTTGAGATCATTTATGGCACATTCAGAATATTTGTTGGTTTCTAACCGACCATGATGAACCTTTTGAGTGCAGAACTCGTTTGACAGTAAAAGAACGAGGGAGATGCAGCTATCTGTTTGAGAAACTTTAGCATCAAATAAACAAGACACTCGAGATTCAGATTCTGAAAATTCTAATCTCCTTCAATATTGCAATAGTAATGACAGTGGAGCTAACTTTGATGCTCGAATGCGTCGACAGATATTGAGAAAAATAACAGAGTTGGGAGATGAGCCATCTCATCCCACAAGTCTAAAAAATCTTATTTCATTGTTTAGCTTGCCTTTGGTACAAAGACACCAGGAAAATGAAAGGACATTTAAAATTTCAAATTATGAATCTCAACTTTATTACGCTCTTAAGCTTAGATCTCAAAGCTTTCCCTTTCTCCTTTCTCATTGTTGGTTTGTGACTTTAATATCTTCTGCATAATGAGGAACTTCTGTCTGCATCTTTTCATGCATGGATATTCGCATTTCTTACTTCTCCAATCTTTATAGCAAGTAAAGTAATTACTTTTTCTTTTTGTTACAGGTTTTGGAAAAACTTGCGAATTTTGAGAAAGTCATTTCTGGAAAACCCAGTAACTTCAAGCGCTGAATCTGGGGGTGGCAATGCTGATTTGTCAGACTGGAAATCTGTTGGTTAGAATTCACACCAGAGCCTTGCAAGGTAAATAATTATGAGTTTATTGACATGCTTAAATGCCAACTTCGTACCCTTTAACACTTCAATGGACTGAAAATTTTGCATAATATTCCTACCAAAAGAAAAAAGTTAGCTTAATATTCCTATAAACAAATTGTAAAATATTTCAATCTGCCCATAACATTACCCCTTGCTCGACAGGAGATTATGAAGTATATGCTATGTTTATGTTTGCTTTATAAATTCATTATGTCCATCCAGTTATGAATTTCTCCTCTGGTTCTTTTTGTCCGATTTTTTAAAAAATAGTTTAATCATTCAAACTTGTACTTTACTGCAAATGGAAAAATGTTTGAACTGTAATCCTCATCTATCCATTACTTAGTTTTCACCATGGATCATGCAGGACTGCATGTCTCGTGGTGATGATCCAAACGACTACTTTGTGCATGAACGTTTTCTCGAGAAGGGGAAAGAGAAATTTAACAAAATGAAAGCCAAACAAAACGACGTGAACGGGAATGGGCGGGCAAATCTCTTACTTGACTCGTTAGTCAGGACGCAGGACATGGGTTTGAGAGTAGGTTAA

mRNA sequence

ATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAAGGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTATACCGGATTTCATTGTTCAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCCATCCATTTCTGTCTTGCTTCTATTCTGGCTGCATTTATTGAACAATAGAAGGAGAAGTGGAGAAGCTAATCAAGCAGATCAGGCTGCCTTGCTACCATGTAGATGGGAAGGTCAATGGGGATCCTGTGGATCCACCCAAGATAAAATCAGTTGAGGTAGGATTTAATGATAGAAGTTTTGAACTAGAACTCTCTTCGGAGATACATACCTTGGTTACTCCTGATTTCTCTGTTGCTTGGTTTTGGAAAAACTTGCGAATTTTGAGAAAGTCATTTCTGGAAAACCCAGTAACTTCAAGCGCTGAATCTGGGGGTGGCAATGCTGATTTGTCAGACTGGAAATCTGACTGCATGTCTCGTGGTGATGATCCAAACGACTACTTTGTGCATGAACGTTTTCTCGAGAAGGGGAAAGAGAAATTTAACAAAATGAAAGCCAAACAAAACGACGTGAACGGGAATGGGCGGGCAAATCTCTTACTTGACTCGTTAGTCAGGACGCAGGACATGGGTTTGAGAGTAGGTTAA

Coding sequence (CDS)

ATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAAGGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTATACCGGATTTCATTGTTCAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCCATCCATTTCTGTCTTGCTTCTATTCTGGCTGCATTTATTGA

Protein sequence

MSAVNVLEPPTRGKVVLNTTLDRSISSAGLRRLQKPPEISFGFVLMTTTITPPFTGLYRISLFRAVILPVVAQVHPFLSCFYSGCIY
Homology
[Close]
BLAST of Cp4.1LG06g02510 vs. NCBI nr
Match: KAG7024356.1 (hypothetical protein SDJN02_13170 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (355), Expect = 2.41e-41
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MSAVNVLEPPTRGKVVLNTTLDRSISSAGLRRLQKPPEISFGFVLMTTTITPPFTGLYRI 60
          MSAVNVLEPPTRGKVVLNTTLDRSISSAGL RLQKPPEISFGFVLMTTTITPPFTGLYRI
Sbjct: 1  MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60

Query: 61 SLFRAVILPVVAQVH 75
          SLFRAVILPVVAQV+
Sbjct: 61 SLFRAVILPVVAQVN 75

[Close]
BLAST of Cp4.1LG06g02510 vs. NCBI nr
Match: KAG6591475.1 (hypothetical protein SDJN03_13821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (354), Expect = 1.17e-39
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MSAVNVLEPPTRGKVVLNTTLDRSISSAGLRRLQKPPEISFGFVLMTTTITPPFTGLYRI 60
          MSAVNVLEPPTRGKVVLNTTLDRSISSAGL RLQKPPEISFGFVLMTTTITPPFTGLYRI
Sbjct: 1  MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60

Query: 61 SLFRAVILPVVAQV 74
          SLFRAVILPVVAQV
Sbjct: 61 SLFRAVILPVVAQV 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g02510 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024356.12.41e-4197.33hypothetical protein SDJN02_13170 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591475.11.17e-3998.65hypothetical protein SDJN03_13821, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG06g02510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02510.1Cp4.1LG06g02510.1mRNA