Cp4.1LG06g02220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g02220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG06: 1094858 .. 1096699 (+)
RNA-Seq Expression	Cp4.1LG06g02220
Synteny	Cp4.1LG06g02220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATGTACTCATTCTTGGTTTCTGTGTGCTGATTCCTAGTTTGATTGTTCCTCAAATGGGTGGTGGCGATTTAAGACAGTCTTGCACTAGATTTTACGGCTACTCTTGGAATTCTCCAATGTCTTTAGCTTATTGGGTTTAGGAACTCGGGTTGGGAGGGGCAAGGTGATTCTGACCCTGTTGTTTGTTTCGGGATTCAACACATTATTTCAGTCCTTGTTTGGGCCTAGACTTTCAGTTCTGGTCGTCCCTTCATATGCCTATCTTGTTTCTACCATCTCAGTTCTTTTGGCTAAAAGATTATGTTTGATTTCATTCACTTTAGTCGGGTGCGCAGCCTCACAATTTTTAAAACACATGTGATAGAGAGTGCACCCTTATAAGAAATGCTTCTTCTTTTTCCATTCTTCCTCTTTCCAACCAACGTGGATCTTACCATCACCCTCAAATAAAAGATGTTTTCTTTAATCAATGTAGGATCTTGCATCCACCCACTTGAGACTCCGCGTCCTCGCTGTCACAACGCCTCGCCGTTAACATATATTGTCCGCTTTTACTCGTCATGCATTGACGTTAGCCTTATAATTTTTGAAACGCATCTTCTAAGGACAAGTTTCCACACCGTTACCCTTTGAAGCCAGCGTTCTCGATTCTTGTAAGGAATGTTTTGTTCCCCTCTTCAACCAACACGAGATTTTGCGGGTAGGAATCTGAACTGACATTTACTTGTTGAATACTTGAGAGATTGGTTCAGACCATCCAAGGAACTGAAGGTGCTCTCATAGTAATGCAATAGCCTTCCAATGGTAATGCAATAGCTAGCCTCTTGCTCTTCAACCTTACCTTGGCTATTAATTCCCTTCCTACTGTTCTTTGCTCTTTTAAGCTAGCAAAACGCGCAGAAATTGGACTCACAAGCAAGTAACAGTTCATGTTTATCCTCCTTTTCAGTTTCACAAAGTGCATAGAGGGTATCACAAACTTTTCTTGATTGCCTTGTGCCTTTGCACTACCTTCCTGTCCTCACTTACTAAAAACAAAAAGCCCAATGTATGATCGATATTCAGTGCTATATGCACACCTCCTGACTTTAAGTACTGTTTATAATCACAAGCCCACAAATACTCCATTTATCACATATATTAGATGTTAATGTGTTTGGAATGTTGGGAAAACCAACCCCATTTATCACATGTTGGAGTGTCTTTCTCTAATGGTTTTTAAATGTGTCGGGAAAATGCTGGTCTACTAGCTATGACAAGAATTGGTAGCAGAAGGGTGATCCAAATATATCAGCTGGCTTCATGATTTCCTTCTCTGTTCTGGGTATGCTGGGATGAATTTATGGACAAAATATTGATACTTTTTAAGCTTCGGAAATATCTCTACTTTGGTGAACAAGTCTGACTCGCTGTCATCATAAACAGGGAAATTTGGAGCACTTTTGGGCTCTGTTCCTCATCCAATTATTGCTGCTGCGTTGTATTGTGTCTTATTCGGCTATGTCTGTACGTACCCCCATCTCTCTAACTTGCCTCCATTTTTTCAATCCTTGTATTGCATCTAATGACGTGTGGAATCTGATTCTAGAATTGACAACACCAGCCACATGGTTTGTATTTTCCTGTGAATTATTAGATATTGCTTAAAATTGGTCACTGACATCCCCAGCCTCTTCTCCCCTTGGGTTTCTCCAATTCTGTAACTTGAACAGTTTCAGATCATAATTCATCTTGGTCTCCTCCTTTTTGGGTTTGTCAATACCACAATACTTCAGATAATATCAGTCGGAGCACGTCCACTCTGGCCATGGATGGGTAACCAGAATGAGACACAATAA

mRNA sequence

CATTATGTACTCATTCTTGGTTTCTGTGTGCTGATTCCTAGTTTGATTGTTCCTCAAATGGGTGGTGGCGATTTAAGACAGTCTTGCACTAGATTTTACGGCTACTCTTGGAATTCTCCAATGAACTCGGGTTGGGAGGGGCAAGGTGATTCTGACCCTGTTGTTTGTTTCGGGATTCAACACATTATTTCAGTCCTTCCTTCCAATGGTAATGCAATAGCTAGCCTCTTGCTCTTCAACCTTACCTTGGCTATTAATTCCCTTCCTACTGTTCTTTGCTCTTTTAAGCTAGCAAAACGCGCAGAAATTGGACTCACAAGCAAAGGGTATCACAAACTTTTCTTGATTGCCTTGTGCCTTTGCACTACCTTCCTGTCCTCACTTACTAAAAACAAAAAGCCCAATGGAAATTTGGAGCACTTTTGGGCTCTGTTCCTCATCCAATTATTGCTGCTGCGTTGTATTGTGTCTTATTCGGCTATGTCTTTTCAGATCATAATTCATCTTGGTCTCCTCCTTTTTGGGTTTGTCAATACCACAATACTTCAGATAATATCAGTCGGAGCACGTCCACTCTGGCCATGGATGGGTAACCAGAATGAGACACAATAA

Coding sequence (CDS)

CATTATGTACTCATTCTTGGTTTCTGTGTGCTGATTCCTAGTTTGATTGTTCCTCAAATGGGTGGTGGCGATTTAAGACAGTCTTGCACTAGATTTTACGGCTACTCTTGGAATTCTCCAATGAACTCGGGTTGGGAGGGGCAAGGTGATTCTGACCCTGTTGTTTGTTTCGGGATTCAACACATTATTTCAGTCCTTCCTTCCAATGGTAATGCAATAGCTAGCCTCTTGCTCTTCAACCTTACCTTGGCTATTAATTCCCTTCCTACTGTTCTTTGCTCTTTTAAGCTAGCAAAACGCGCAGAAATTGGACTCACAAGCAAAGGGTATCACAAACTTTTCTTGATTGCCTTGTGCCTTTGCACTACCTTCCTGTCCTCACTTACTAAAAACAAAAAGCCCAATGGAAATTTGGAGCACTTTTGGGCTCTGTTCCTCATCCAATTATTGCTGCTGCGTTGTATTGTGTCTTATTCGGCTATGTCTTTTCAGATCATAATTCATCTTGGTCTCCTCCTTTTTGGGTTTGTCAATACCACAATACTTCAGATAATATCAGTCGGAGCACGTCCACTCTGGCCATGGATGGGTAACCAGAATGAGACACAATAA

Protein sequence

HYVLILGFCVLIPSLIVPQMGGGDLRQSCTRFYGYSWNSPMNSGWEGQGDSDPVVCFGIQHIISVLPSNGNAIASLLLFNLTLAINSLPTVLCSFKLAKRAEIGLTSKGYHKLFLIALCLCTTFLSSLTKNKKPNGNLEHFWALFLIQLLLLRCIVSYSAMSFQIIIHLGLLLFGFVNTTILQIISVGARPLWPWMGNQNETQ

Homology

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BLAST of Cp4.1LG06g02220 vs. NCBI nr
Match: KAG6591428.1 (hypothetical protein SDJN03_13774, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 2.03e-19
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1   HYVLILGFCVLIPSLIVPQMGGGDLRQSCTRFYGYSWNSPMN 42
           HYVLILGFCVLIPSLIVPQMGGGDLRQSCTRFY YSWNSPM+
Sbjct: 104 HYVLILGFCVLIPSLIVPQMGGGDLRQSCTRFYSYSWNSPMS 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g02220 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g02220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591428.1	2.03e-19	95.24	hypothetical protein SDJN03_13774, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG06g02220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g02220 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g02220.1	Cp4.1LG06g02220.1	mRNA