Cp4.1LG06g02130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g02130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPre-mRNA-processing protein 40A isoform X1
LocationCp4.1LG06: 1157454 .. 1157840 (-)
RNA-Seq ExpressionCp4.1LG06g02130
SyntenyCp4.1LG06g02130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTGCAACAACAGAACCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGCAGCTGCGGGCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCACGAATGGAGAGTATGAGAAGAGTTGCAAGTTGAAGCAGAATAAAACTGGGTTTGGAGGGTGGATGAACTTGTTTGGTCATTTGTCTTGTAAGCACTTGACGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACGAACCGTGTAG

mRNA sequence

ATGACCTGCAACAACAGAACCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGCAGCTGCGGGCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCACGAATGGAGAGTATGAGAAGAGTTGCAAGTTGAAGCAGAATAAAACTGGGTTTGGAGGGTGGATGAACTTGTTTGGTCATTTGTCTTGTAAGCACTTGACGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACGAACCGTGTAG

Coding sequence (CDS)

ATGACCTGCAACAACAGAACCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGACGACGATCTGGGGCAAAAGCAGCTGCGGGCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGTTCAGAGAGTGCACGAATGGAGAGTATGAGAAGAGTTGCAAGTTGAAGCAGAATAAAACTGGGTTTGGAGGGTGGATGAACTTGTTTGGTCATTTGTCTTGTAAGCACTTGACGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACGAACCGTGTAG

Protein sequence

MTCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKQLRAPPCTSARKGQKKVQKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWMNLFGHLSCKHLTAVRDDSLISSPVSKRTV
Homology
BLAST of Cp4.1LG06g02130 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 4.37e-62
Identity = 98/133 (73.68%), Postives = 110/133 (82.71%), Query Frame = 0

Query: 1   MTCNNRTHSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKQLRAPPCTSARKGQK 60
           M CNN+THSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +K+L+ PPCT ARKG K
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  KV-QKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWM--NLFGHLSCKHLTAVRD 120
           K+ QKDG  EDPFLAA+RECT+ + EK+CKLK+NK GFGGWM  N FG+LSCK LTAVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 128
           DSLISSPVSKRTV
Sbjct: 121 DSLISSPVSKRTV 133

BLAST of Cp4.1LG06g02130 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195 bits (496), Expect = 1.43e-61
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0

Query: 1  MTCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKQLRAPPCTSARKGQKKV 60
          MTC+NR HSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK+LR PPCTSARKGQKKV
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61 QKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGF 95
          QKDGVFEDPFLAAFREC+NGE EK+CKLKQNKTGF
Sbjct: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of Cp4.1LG06g02130 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195 bits (496), Expect = 6.38e-55
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0

Query: 1  MTCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKQLRAPPCTSARKGQKKV 60
          MTC+NR HSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK+LR PPCTSARKGQKKV
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61 QKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGF 95
          QKDGVFEDPFLAAFREC+NGE EK+CKLKQNKTGF
Sbjct: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of Cp4.1LG06g02130 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 2.75e-37
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 0

Query: 1  MTCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKQLRAPPCTSARKGQKKV 60
          M CNN+THSRGRVAFSWENKPG CKAAVAPP      DD  +KQL+ PPCT ARKG KK+
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGVFEDPFLAAFRECTNGEYEKSCKL 88
          QKDG  EDPFLAA++ECT+ + EK+C L
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCPL 88

BLAST of Cp4.1LG06g02130 vs. NCBI nr
Match: CBI19366.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 1.52e-13
Identity = 53/141 (37.59%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 6   RTHSRGRVAFSWENKPGECKAA----------------VAPPFYRL--GDDDLGQKQLRA 65
           + HS+G V F+WENKPG CKA                 + PP   L  G   +   Q+  
Sbjct: 5   KIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIPL 64

Query: 66  PPCT--------SARKGQKKVQKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWM 120
           PPCT        S++KG  + Q     EDPFLAA++ECT    + + K    KT  G   
Sbjct: 65  PPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECT----KNTRKGHDGKTHLGR-S 124

BLAST of Cp4.1LG06g02130 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 9.51e-63
Identity = 95/130 (73.08%), Postives = 107/130 (82.31%), Query Frame = 0

Query: 1   MTCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKQLRAPPCTSARKGQKKV 60
           M CNN+THSRGRVAFSWENKPG CKAAVAPP      DD  +KQL+ PPCT ARKG KK+
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  QKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWM--NLFGHLSCKHLTAVRDDSL 120
           QKDG  EDPFLAA++ECT+ + EK+CKLK+NK+GFGGWM  N F +LSCK LTAVRDDSL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSL 120

Query: 121 ISSPVSKRTV 128
           ISSP SKRTV
Sbjct: 121 ISSPDSKRTV 130

BLAST of Cp4.1LG06g02130 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 2.12e-62
Identity = 98/133 (73.68%), Postives = 110/133 (82.71%), Query Frame = 0

Query: 1   MTCNNRTHSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKQLRAPPCTSARKGQK 60
           M CNN+THSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +K+L+ PPCT ARKG K
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  KV-QKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWM--NLFGHLSCKHLTAVRD 120
           K+ QKDG  EDPFLAA+RECT+ + EK+CKLK+NK GFGGWM  N FG+LSCK LTAVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 128
           DSLISSPVSKRTV
Sbjct: 121 DSLISSPVSKRTV 133

BLAST of Cp4.1LG06g02130 vs. ExPASy TrEMBL
Match: E0CNY8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.38e-14
Identity = 53/141 (37.59%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 6   RTHSRGRVAFSWENKPGECKAA----------------VAPPFYRL--GDDDLGQKQLRA 65
           + HS+G V F+WENKPG CKA                 + PP   L  G   +   Q+  
Sbjct: 5   KIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIPL 64

Query: 66  PPCT--------SARKGQKKVQKDGVFEDPFLAAFRECTNGEYEKSCKLKQNKTGFGGWM 120
           PPCT        S++KG  + Q     EDPFLAA++ECT    + + K    KT  G   
Sbjct: 65  PPCTFQGPPSRNSSKKGHLRKQ-----EDPFLAAYKECT----KNTRKGHDGKTHLGR-S 124

BLAST of Cp4.1LG06g02130 vs. ExPASy TrEMBL
Match: M5XJQ6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.46e-13
Identity = 53/134 (39.55%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 8   HSRGRVAFSWENKPGECKAAVAPPFYR--------LGDDD----LGQKQLRAPPCT---- 67
           HS G+V FSWEN PG  KA   P  YR         G+      L    L  PPCT    
Sbjct: 6   HSLGKVPFSWENMPGVSKATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQPL 65

Query: 68  SARKGQKKVQKDGVFEDPFLAAFRECTN---GEYEKSCKLKQN---KTGFGGWMNLFGHL 119
           S     K ++K    EDPFL AF+ECT    G+ +    L      ++G G W   FG L
Sbjct: 66  SRSSSTKALRKH---EDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFG-FG-L 125

BLAST of Cp4.1LG06g02130 vs. ExPASy TrEMBL
Match: A0A251RBI7 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.82e-13
Identity = 53/134 (39.55%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 8   HSRGRVAFSWENKPGECKAAVAPPFYR--------LGDDD----LGQKQLRAPPCT---- 67
           HS G+V FSWEN PG  KA   P  YR         G+      L    L  PPCT    
Sbjct: 6   HSLGKVPFSWENMPGVSKATQPPHPYRELPPPPCPCGEASPKLSLQDFHLPLPPCTFQPL 65

Query: 68  SARKGQKKVQKDGVFEDPFLAAFRECTN---GEYEKSCKLKQN---KTGFGGWMNLFGHL 119
           S     K ++K    EDPFL AF+ECT    G+ +    L      ++G G W   FG L
Sbjct: 66  SRSSSTKALRKH---EDPFLVAFQECTKPPEGKAKDKTTLSNKYWFRSGLGSWFG-FG-L 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0064468.14.37e-6273.68hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201... [more]
KAG7024319.11.43e-6192.63hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591440.16.38e-5592.63Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAE8649893.12.75e-3769.32hypothetical protein Csa_012691 [Cucumis sativus][more]
CBI19366.31.52e-1337.59unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A0A0L2M99.51e-6373.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1[more]
A0A5A7VA562.12e-6273.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E0CNY87.38e-1437.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g08660 PE=4 SV=... [more]
M5XJQ62.46e-1339.55Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021117mg PE=4 SV=1[more]
A0A251RBI72.82e-1339.55Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G419300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696:SF15SUBFAMILY NOT NAMEDcoord: 5..121
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 5..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02130.1Cp4.1LG06g02130.1mRNA