Cp4.1LG06g01940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g01940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG06: 1066133 .. 1067838 (+)
RNA-Seq Expression	Cp4.1LG06g01940
Synteny	Cp4.1LG06g01940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAGAATTACCCGGCTATCGGCGGGTGACTGCTGCAGCGACCCGCGCTCGCACGATTCCCTGTTCCGACAGCGGCAATAGCTTAAAACGAACCTCGAATCGCTTCGAGTTCTTGTCCCATGCGCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATCGCACTTCGGGTATCTAAACCTATTGGCCATTGATTGAGGGTATATAATTTCAGTTAAGCTATGCTTAGAACTATACATTTTTACTTCGTGTCATATTCATTCATGGATCTATATGTTCATACATTATAATTATAACAGTTTACTGATTAAGTTAGATTAGATGATGATACATTACTCTCTGACTGCTAACATATGCCCTACCATTTGATTCATTCGCTATCCTCTTCTGGCTTTCATATTTTGTGATATTTTATATTAATCAGTTAGATTGGAAGCCACCCCATGTCATTAATCATTGTGGATAGCAAATATAGAACTTTAGTTTTCAAAAGATAGCTAAATATAGGATGCGTGGTTGATGAAAAGCACAGATTCGTTAAAAGTAGAGCATAAAAGAGATCACCTGCAACAAAATTCCCAATAGAGGTTTTCATTTTCCATTTCCCCCAAACTCATGTCATTTTCAAATCAAAATCCAAACTGCCCCCTGAAATATTGACAGAAGCAATCCAAATTTGGTTCGAGACTGACATCCAAGAGGAAACCAAGAGAAAAAGAAAGGGTTATGTGTGTTATGAATCCATGATTGATCATTGAAGCATGGAGAGGAATGGGCAAGGTATGTTTGAATACACACATCCTCTTTATCCTCCTGCCCCTTGTGGTTGCTTATATTGTGTCATCTGCTTGTCATAGACCACTTGTTTTTATCAAAAATACCCAATTGATGCCAATTCACTGCCCCCCATGTGCTGCACACTTCCCGCTTGGATCGGCAAGAAATAAGAGACCGACCGATCTGCAGGGTGCAGGGTGCAGGGTGCAGGCGCAGGCCAGTCAAACCCTCGGAATTTGACTACTGCGAGTTCAGGTGGGGCAGAACCATAACCATAACCATAACTACAGAACCGTTTTCTATTAATGTGCGTGATAAGCAAAACTTACTTTTACTGACAAACCCACTTGGTATTTTCAATCTTCCTCCTCCTCACCGACATCCACCTAACTCCCACCACTATTCCATTGGTTTTGCTTCCACTTAATTTCCTTATTTATATTGTTTTTGTTTTCGCACATGGGAGTTGCAGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATACCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAAATGCCTTTTGATTATCATCATCTTCAAGGCAAGAGCTTGGGTATTGCTTTAAAGGCATACCCAAGTTCTGTCACCTCATATATTGCTTCTGCCTTTTGATTACCATCATTTTCATGGATCAAAGGAGTATTTTATTCGACATATATCAATTTTTTAATTAGATTTTTTATTAGAAAGAAAAAAAATCTCGTTTTCACTCAAAGTTGAGAGAAACAAAACATTTCGAGAGAAACAAAAACATTTCTTATATAGAAACCTCTCCCTAGCTT

mRNA sequence

GTTTCAGAATTACCCGGCTATCGGCGGGTGACTGCTGCAGCGACCCGCGCTCGCACGATTCCCTGTTCCGACAGCGGCAATAGCTTAAAACGAACCTCGAATCGCTTCGAGTTCTTGTCCCATGCGCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATCGCACTTCGGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATACCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAAATGCCTTTTGATTATCATCATCTTCAAGGCAAGAGCTTGGGTATTGCTTTAAAGGCATACCCAAGTTCTGTCACCTCATATATTGCTTCTGCCTTTTGATTACCATCATTTTCATGGATCAAAGGAGTATTTTATTCGACATATATCAATTTTTTAATTAGATTTTTTATTAGAAAGAAAAAAAATCTCGTTTTCACTCAAAGTTGAGAGAAACAAAACATTTCGAGAGAAACAAAAACATTTCTTATATAGAAACCTCTCCCTAGCTT

Coding sequence (CDS)

GTTTCAGAATTACCCGGCTATCGGCGGGTGACTGCTGCAGCGACCCGCGCTCGCACGATTCCCTGTTCCGACAGCGGCAATAGCTTAAAACGAACCTCGAATCGCTTCGAGTTCTTGTCCCATGCGCCGATTGATCTCGGATCTGAAAAACCGCGATTCGACGGCTTCAGTTCGTGCCCCACTCGCCTCTTTGTTTCAACTTCTTCGCTCTCCAAGAGATTCTCTATATGCCATCGCACTTCGGAGAAATGGAGGCCGGAAGTGATTGATTGTGAAAGATTGAAGATTTCCTTGCAATACCGATGGGGCGTTAAAGGGCGCAAAGGTACAGCCATGGGCTTCCCGTTGGTTTTTGCAAATGCCTTTTGA

Protein sequence

VSELPGYRRVTAAATRARTIPCSDSGNSLKRTSNRFEFLSHAPIDLGSEKPRFDGFSSCPTRLFVSTSSLSKRFSICHRTSEKWRPEVIDCERLKISLQYRWGVKGRKGTAMGFPLVFANAF

Homology

[Close]

BLAST of Cp4.1LG06g01940 vs. NCBI nr
Match: KAG7024301.1 (hypothetical protein SDJN02_13115 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 2.86e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 82  EKWRPEVIDCERLKISLQYRWGVKGRKGTAMGFPLVFANA 121
           EKWRPEVIDCERLKISLQ+RWGVKGRKGTAMGFPLVFA A
Sbjct: 7   EKWRPEVIDCERLKISLQFRWGVKGRKGTAMGFPLVFAIA 46

[Close]

BLAST of Cp4.1LG06g01940 vs. NCBI nr
Match: KAG6591421.1 (Cyclin-D5-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 7.53e-09
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 81  SEKWRPEVIDCERLKISLQYRWGVKGRKGTAMGFPL 116
           +EKWRPEVIDCERLKISLQ+RWGVKGRK   +G PL
Sbjct: 4   AEKWRPEVIDCERLKISLQFRWGVKGRK--EIGSPL 37

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g01940 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g01940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024301.1	2.86e-19	95.00	hypothetical protein SDJN02_13115 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591421.1	7.53e-09	80.56	Cyclin-D5-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG06g01940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g01940 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g01940.1	Cp4.1LG06g01940.1	mRNA