Cp4.1LG06g01800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g01800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein GID2-like
Location	Cp4.1LG06: 986654 .. 987214 (-)
RNA-Seq Expression	Cp4.1LG06g01800
Synteny	Cp4.1LG06g01800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGAGTTGTTCCGGAGGGGAAAGGGGATCGGAAGACGGAGAAGAAACCCAGGGCGGTTTCCCATGACTGTGATGGAGGAGGCGTCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCACGACTCTGGCCATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACCGCTGAAGATGAACGGCTTTGGGAGCTGATCTGCACTAGGCACTGGGCTAACACCGGCTGTGGCAATCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGCCGCCTTCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACATCTTCGTCCGCTTCCTCCTCGTCGCCGTGGTCTCCGTTCCCGGCGATGATTGGGTCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTCTCGCTTCTCTCAATTCGATACTACGAAAAGATGAATTTCAGCAGCAGAGGCAGATGA

mRNA sequence

ATGAAGCGAGTTGTTCCGGAGGGGAAAGGGGATCGGAAGACGGAGAAGAAACCCAGGGCGGTTTCCCATGACTGTGATGGAGGAGGCGTCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCACGACTCTGGCCATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACCGCTGAAGATGAACGGCTTTGGGAGCTGATCTGCACTAGGCACTGGGCTAACACCGGCTGTGGCAATCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGCCGCCTTCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACATCTTCGTCCGCTTCCTCCTCGTCGCCGTGGTCTCCGTTCCCGGCGATGATTGGGTCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTCTCGCTTCTCTCAATTCGATACTACGAAAAGATGAATTTCAGCAGCAGAGGCAGATGA

Coding sequence (CDS)

ATGAAGCGAGTTGTTCCGGAGGGGAAAGGGGATCGGAAGACGGAGAAGAAACCCAGGGCGGTTTCCCATGACTGTGATGGAGGAGGCGTCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCACGACTCTGGCCATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACCGCTGAAGATGAACGGCTTTGGGAGCTGATCTGCACTAGGCACTGGGCTAACACCGGCTGTGGCAATCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGCCGCCTTCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACATCTTCGTCCGCTTCCTCCTCGTCGCCGTGGTCTCCGTTCCCGGCGATGATTGGGTCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTCTCGCTTCTCTCAATTCGATACTACGAAAAGATGAATTTCAGCAGCAGAGGCAGATGA

Protein sequence

MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

Homology

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.3e-45
Identity = 93/177 (52.54%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAACVSKQWH 67
           G    +T KK ++           ++ GF NLD+NL++EV KHVDA TLAM++CVSK WH
Sbjct: 12  GDAHNETNKKMKSTE--------EEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWH 71

Query: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSS 127
           KTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP         
Sbjct: 72  KTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP--------- 131

Query: 128 SSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR 185
                                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 132 --------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-25
Identity = 64/157 (40.76%), Postives = 88/157 (56.05%), Query Frame = 0


Query: 26  DGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWA 85
           +  G  ++    +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WA
Sbjct: 63  EDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWA 122

Query: 86  NTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSSSTSSSASSSSPW- 145
           N G   +QLR+VVL+LGGFRRLH+++I PL                            W 
Sbjct: 123 NLGFSERQLRAVVLSLGGFRRLHAVYIRPL---------------------------QWR 182

Query: 146 -SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM 180
            +  P   G + PP R G+D+V LSLSL SI +++ M
Sbjct: 183 GAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 40/143 (27.97%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 37  MNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 96
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 97  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPP 156
           VV ALGG+R L+ L I P                                   ++   P 
Sbjct: 88  VVSALGGYRCLYFLCIRP-----------------------------------VLARLPK 133

Query: 157 ARWGKDEVHLSLSLLSIRYYEKM 180
             W +D++ LSLSL  + YYE++
Sbjct: 148 LLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cp4.1LG06g01800 vs. NCBI nr
Match: XP_023536623.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (929), Expect = 5.54e-126
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180

Query: 181 FSSRGR 186
           FSSRGR
Sbjct: 181 FSSRGR 186

[Close]

BLAST of Cp4.1LG06g01800 vs. NCBI nr
Match: KAG6591404.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (912), Expect = 2.02e-123
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSSSSSSSSS  TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSSSSSSSSS--TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180

Query: 181 FSSRGR 186
           FSSRGR
Sbjct: 181 FSSRGR 184

[Close]

BLAST of Cp4.1LG06g01800 vs. NCBI nr
Match: XP_022937325.1 (F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 345 bits (885), Expect = 2.06e-119
Identity = 176/186 (94.62%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDA TLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSS         TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSS---------TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 177

Query: 181 FSSRGR 186
           FSSRGR
Sbjct: 181 FSSRGR 177

[Close]

BLAST of Cp4.1LG06g01800 vs. NCBI nr
Match: XP_022977120.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 344 bits (883), Expect = 4.63e-119
Identity = 176/186 (94.62%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGF+NLDDNLLFEVFKHVDA TLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFLNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSSSSS      TSSS SSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSSSSS------TSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180

Query: 181 FSSRGR 186
           F SRGR
Sbjct: 181 FGSRGR 180

[Close]

BLAST of Cp4.1LG06g01800 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 316 bits (810), Expect = 8.81e-108
Identity = 167/190 (87.89%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG----VSDKTGFMNLDDNLLFEVFKHVDATTL 60
           MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDA TL
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180
           KPQSSSSSSSSSSSSSS+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY
Sbjct: 121 KPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

Query: 181 EKMNFSSRGR 186
           EKMNFS+RGR
Sbjct: 181 EKMNFSNRGR 190

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 345 bits (885), Expect = 9.99e-120
Identity = 176/186 (94.62%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDA TLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSS         TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSS---------TSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 177

Query: 181 FSSRGR 186
           FSSRGR
Sbjct: 181 FSSRGR 177

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 344 bits (883), Expect = 2.24e-119
Identity = 176/186 (94.62%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGF+NLDDNLLFEVFKHVDA TLAMAA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFLNLDDNLLFEVFKHVDARTLAMAA 60

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120
           CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS
Sbjct: 61  CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQS 120

Query: 121 SSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180
           SSSSSSS      TSSS SSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 SSSSSSS------TSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180

Query: 181 FSSRGR 186
           F SRGR
Sbjct: 181 FGSRGR 180

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 316 bits (810), Expect = 4.27e-108
Identity = 167/190 (87.89%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG----VSDKTGFMNLDDNLLFEVFKHVDATTL 60
           MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDA TL
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180
           KPQSSSSSSSSSSSSSS+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY
Sbjct: 121 KPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

Query: 181 EKMNFSSRGR 186
           EKMNFS+RGR
Sbjct: 181 EKMNFSNRGR 190

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 9.60e-105
Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDATTLA 60
           MKRVV +G GDRK  KKP+A + D   GG    SDKTGFMNLDDNLLFEVFKHVDA TLA
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSSSSSSS-SSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180
           PQSSSSSSSSSS SS+S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY
Sbjct: 121 PQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

Query: 181 EKMNFSSRGR 186
           EKMNFS+RGR
Sbjct: 181 EKMNFSNRGR 190

[Close]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 9.60e-105
Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDATTLA 60
           MKRVV +G GDRK  KKP+A + D   GG    SDKTGFMNLDDNLLFEVFKHVDA TLA
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSSSSSSS-SSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180
           PQSSSSSSSSSS SS+S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY
Sbjct: 121 PQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

Query: 181 EKMNFSSRGR 186
           EKMNFS+RGR
Sbjct: 181 EKMNFSNRGR 190

[Close]

BLAST of Cp4.1LG06g01800 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-46
Identity = 93/177 (52.54%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAACVSKQWH 67
           G    +T KK ++           ++ GF NLD+NL++EV KHVDA TLAM++CVSK WH
Sbjct: 12  GDAHNETNKKMKSTE--------EEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWH 71

Query: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSS 127
           KTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP         
Sbjct: 72  KTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP--------- 131

Query: 128 SSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR 185
                                      P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 132 --------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Cp4.1LG06g01800 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.0e-11
Identity = 40/143 (27.97%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 37  MNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 96
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 97  VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPP 156
           VV ALGG+R L+ L I P                                   ++   P 
Sbjct: 88  VVSALGGYRCLYFLCIRP-----------------------------------VLARLPK 133

Query: 157 ARWGKDEVHLSLSLLSIRYYEKM 180
             W +D++ LSLSL  + YYE++
Sbjct: 148 LLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cp4.1LG06g01800 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 27/88 (30.68%), Postives = 36/88 (40.91%), Query Frame = 0


Query: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDATTLAMAA 60
           ++ V P G   RK    P A+ H C             L D LLFEVF  +    L  A+
Sbjct: 38  VRPVPPFGSTSRKPHFDP-ALIHRC-------------LPDELLFEVFARMMPYDLGRAS 97

Query: 61  CVSKQWHKTAEDERLWELICTRHWANTG 89
           CV ++W  T  +   W   C + W   G
Sbjct: 98  CVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g01800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	9.3e-45	52.54	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	8.2e-25	40.76	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	1.3e-09	27.97	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Cp4.1LG06g01800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536623.1	5.54e-126	100.00	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591404.1	2.02e-123	98.92	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022937325.1	2.06e-119	94.62	F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-...	[more]
XP_022977120.1	4.63e-119	94.62	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_011654137.1	8.81e-108	87.89	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]

BLAST of Cp4.1LG06g01800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FA22	9.99e-120	94.62	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A6J1ILD7	2.24e-119	94.62	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A0A0L2H5	4.27e-108	87.89	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A5A7VFE5	9.60e-105	86.84	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	9.60e-105	86.84	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g01800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	6.6e-46	52.54	F-box family protein	[more]
AT5G48170.1	9.0e-11	27.97	F-box family protein	[more]
AT1G21760.1	2.1e-04	30.68	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 39..79 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 36..80 e-value: 1.1E-7 score: 31.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 33..79 score: 9.338503
None	No IPR available	GENE3D	1.20.1280.50		coord: 30..144 e-value: 7.7E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 15..184
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 15..184
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 30..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g01800.1	Cp4.1LG06g01800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding